Colletotrichum graminicola      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 30 genes.  Reviewed (0 or Unreviewed (30

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cogr-1260
GLRG_00061
E3Q2T8
GLRG_00061
2
LLPS-Cogr-0357
GLRG_00218
E3Q1X3
GLRG_00218
3
LLPS-Cogr-0507
GLRG_01286
E3Q4X7
GLRG_01286
4
LLPS-Cogr-1077
GLRG_01487
E3Q695
GLRG_01487
5
LLPS-Cogr-0919
GLRG_02591
E3Q7D3
GLRG_02591
6
LLPS-Cogr-0949
GLRG_03041
E3QAK9
GLRG_03041
7
LLPS-Cogr-0002
GLRG_03253
E3QB71
GLRG_03253
8
LLPS-Cogr-0972
GLRG_03566
E3QBT3
GLRG_03566
9
LLPS-Cogr-0782
GLRG_03735
E3QCK3
GLRG_03735
10
LLPS-Cogr-0132
GLRG_03828
E3QDH9
GLRG_03828
11
LLPS-Cogr-1148
GLRG_04273
E3QE41
GLRG_04273
12
LLPS-Cogr-0237
GLRG_04367
E3QEB7
GLRG_04367
13
LLPS-Cogr-1290
GLRG_04425
E3QEH5
GLRG_04425
14
LLPS-Cogr-0378
GLRG_04526
E3QES6
GLRG_04526
15
LLPS-Cogr-0999
GLRG_04570
E3QEX0
GLRG_04570
16
LLPS-Cogr-0290
GLRG_04610
E3QF28
GLRG_04610
17
LLPS-Cogr-1144
GLRG_05830
E3QI71
GLRG_05830
18
LLPS-Cogr-0277
GLRG_05884
E3QIC5
GLRG_05884
19
LLPS-Cogr-1086
GLRG_06451
E3QKB9
GLRG_06451
20
LLPS-Cogr-0916
GLRG_07477
E3QN95
GLRG_07477
21
LLPS-Cogr-0222
GLRG_07568
E3QNW6
GLRG_07568
22
LLPS-Cogr-0099
GLRG_07641
E3QP39
GLRG_07641
23
LLPS-Cogr-1239
GLRG_07770
E3QNL3
GLRG_07770
24
LLPS-Cogr-0125
GLRG_08410
E3QQX8
GLRG_08410
25
LLPS-Cogr-1106
GLRG_08711
E3QRE4
GLRG_08711
26
LLPS-Cogr-0526
GLRG_08760
E3QRJ3
GLRG_08760
27
LLPS-Cogr-0870
GLRG_10387
E3QWK5
GLRG_10387
28
LLPS-Cogr-0253
GLRG_10388
E3QWK6
GLRG_10388
29
LLPS-Cogr-0190
GLRG_10725
E3QXJ3
GLRG_10725
30
LLPS-Cogr-0058
GLRG_11261
E3QZ29
GLRG_11261