Chlamydomonas reinhardtii      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 43 genes.  Reviewed (0 or Unreviewed (43

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Chr-1155
CHLRE_09g388000v5
A8IZJ9
CDKD1
2
LLPS-Chr-0089
CHLRE_01g016050v5
A0A2K3E5Q8
CHLRE_01g016050v5
3
LLPS-Chr-1189
CHLRE_01g032250v5
A0A2K3E6V2
CHLRE_01g032250v5
4
LLPS-Chr-0367
CHLRE_01g038650v5
A0A2K3E780
CHLRE_01g038650v5
5
LLPS-Chr-0699
CHLRE_01g063632v5
A0A2K3E8G5
CHLRE_01g063632v5
6
LLPS-Chr-0414
CHLRE_02g093300v5
A0A2K3E1E8
CHLRE_02g093300v5
7
LLPS-Chr-0201
CHLRE_02g142086v5
A8JDK0
CHLRE_02g142086v5
8
LLPS-Chr-0930
CHLRE_03g158150v5
A0A2K3DW67
CHLRE_03g158150v5
9
LLPS-Chr-0506
CHLRE_03g164950v5
A0A2K3DWM9
CHLRE_03g164950v5
10
LLPS-Chr-1460
CHLRE_03g173500v5
A0A2K3DX83
CHLRE_03g173500v5
11
LLPS-Chr-0950
CHLRE_03g197350v5
A0A2K3DYR4
CHLRE_03g197350v5
12
LLPS-Chr-1595
CHLRE_04g213905v5
A0A2K3DTX1
CHLRE_04g213905v5
13
LLPS-Chr-1492
CHLRE_06g274500v5
A0A2K3DNK3
CHLRE_06g274500v5
14
LLPS-Chr-1319
CHLRE_06g280550v5
A0A2K3DPL4
CHLRE_06g280550v5
15
LLPS-Chr-0013
CHLRE_06g297750v5
A0A2K3DQQ7
CHLRE_06g297750v5
16
LLPS-Chr-0977
CHLRE_06g307450v5
A0A2K3DRF1
CHLRE_06g307450v5
17
LLPS-Chr-0893
CHLRE_08g380600v5
A0A2K3DI13
CHLRE_08g380600v5
18
LLPS-Chr-0571
CHLRE_09g391949v5
A0A2K3DE86
CHLRE_09g391949v5
19
LLPS-Chr-0960
CHLRE_10g423350v5
A8ICG2
CHLRE_10g423350v5
20
LLPS-Chr-0966
CHLRE_10g446900v5
A0A2K3DAW8
CHLRE_10g446900v5
21
LLPS-Chr-0478
CHLRE_10g453650v5
A0A2K3DBB5
CHLRE_10g453650v5
22
LLPS-Chr-0234
CHLRE_10g462250v5
A0A2K3DBZ4
CHLRE_10g462250v5
23
LLPS-Chr-1388
CHLRE_10g467200v5
A0A2K3DCC3
CHLRE_10g467200v5
24
LLPS-Chr-1327
CHLRE_11g467591v5
A0A2K3D7E0
CHLRE_11g467591v5
25
LLPS-Chr-0537
CHLRE_12g494100v5
A0A2K3D1T9
CHLRE_12g494100v5
26
LLPS-Chr-1631
CHLRE_12g538300v5
A0A2K3D5B0
CHLRE_12g538300v5
27
LLPS-Chr-1201
CHLRE_12g553750v5
A0A2K3D5Y8
CHLRE_12g553750v5
28
LLPS-Chr-1378
CHLRE_13g573650v5
A0A2K3CZX1
CHLRE_13g573650v5
29
LLPS-Chr-1214
CHLRE_13g602700v5
A0A2K3D199
CHLRE_13g602700v5
30
LLPS-Chr-1575
CHLRE_15g635350v5
A0A2K3CWD9
CHLRE_15g635350v5
31
LLPS-Chr-1055
CHLRE_16g675637v5
A8J3A8
CHLRE_16g675637v5
32
LLPS-Chr-0764
CHLRE_16g676400v5
A0A2K3CVC9
CHLRE_16g676400v5
33
LLPS-Chr-0189
CHLRE_17g697350v5
A0A2K3CNP4
CHLRE_17g697350v5
34
LLPS-Chr-1002
CHLRE_17g734000v5
A0A2K3CR81
CHLRE_17g734000v5
35
LLPS-Chr-0538
CHLRE_07g348900v5
A8IU30
DNJ19
36
LLPS-Chr-1682
CHLRE_14g619550v5
A8HP17
POA7
37
LLPS-Chr-0501
CHLRE_02g073650v5
A8I9S6
PRP19
38
LLPS-Chr-0480
CHLRE_09g408200v5
A8J4I2
RSZ22
39
LLPS-Chr-0037
CHLRE_17g712000v5
A8JDG6
SCL26
40
LLPS-Chr-0114
CHLRE_16g656250v5
A8J8G5
SMP12
41
LLPS-Chr-0373
CHLRE_06g252700v5
A8HYG6
SPL2
42
LLPS-Chr-0651
CHLRE_01g026450v5
A8HQ72
SRP35
43
LLPS-Chr-0800
CHLRE_03g146487v5
A8J2W2
XPO1