Cercocebus atys      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 118 genes.  Reviewed (0 or Unreviewed (118

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cea-0359
ENSCATG00000000284.1
A0A2K5KHH1
2
LLPS-Cea-0443
ENSCATG00000033337.1
A0A2K5M1P3
3
LLPS-Cea-1081
ENSCATG00000039369.1
A0A2K5N591
4
LLPS-Cea-1211
ENSCATG00000038329.1
A0A2K5MYI3
5
LLPS-Cea-1337
ENSCATG00000036179.1
A0A2K5MJW8
6
LLPS-Cea-1359
ENSCATG00000032063.1
A0A2K5LTH7
7
LLPS-Cea-1735
ENSCATG00000042294.1
A0A2K5NPE9
8
LLPS-Cea-2024
ENSCATG00000043560.1
A0A2K5NWS6
9
LLPS-Cea-2149
ENSCATG00000032189.1
A0A2K5LV44
10
LLPS-Cea-3041
ENSCATG00000035457.1
A0A2K5MF94
11
LLPS-Cea-3222
ENSCATG00000035585.1
A0A2K5MG55
12
LLPS-Cea-2013
ENSCATG00000038820.1
A0A2K5N230
AGO2
13
LLPS-Cea-0372
ENSCATG00000043302.1
A0A2K5NUX8
AKAP17A
14
LLPS-Cea-0931
ENSCATG00000033169.1
A0A2K5M0M2
ALYREF
15
LLPS-Cea-1503
ENSCATG00000041057.1
A0A2K5NG66
ANXA10
16
LLPS-Cea-0818
ENSCATG00000043236.1
A0A2K5NUX4
ANXA2
17
LLPS-Cea-0097
ENSCATG00000034316.1
A0A2K5M7R9
ATR
18
LLPS-Cea-0984
ENSCATG00000033204.1
A0A2K5M0P5
BCAS2
19
LLPS-Cea-1489
ENSCATG00000045151.1
A0A2K5P769
C9orf78
20
LLPS-Cea-0386
ENSCATG00000034760.1
A0A2K5MAN3
CARM1
21
LLPS-Cea-1085
ENSCATG00000033593.1
A0A2K5M365
CASC3
22
LLPS-Cea-1433
ENSCATG00000035386.1
A0A2K5MET1
CCNL1
23
LLPS-Cea-0262
ENSCATG00000038925.1
A0A2K5N2C2
CDC5L
24
LLPS-Cea-0866
ENSCATG00000035950.1
A0A2K5MI77
CDK7
25
LLPS-Cea-2220
ENSCATG00000041503.1
A0A2K5NJJ6
CDK9
26
LLPS-Cea-0061
ENSCATG00000041616.1
A0A2K5NKB8
CDKL5
27
LLPS-Cea-3188
ENSCATG00000017809.1
A0A2K5L081
COP1
28
LLPS-Cea-2173
ENSCATG00000034093.1
A0A2K5M6V1
CSNK1A1
29
LLPS-Cea-4433
ENSCATG00000043709.1
A0A2K5NXB3
DDX39B
30
LLPS-Cea-1343
ENSCATG00000040891.1
A0A2K5NFR2
DDX46
31
LLPS-Cea-2961
ENSCATG00000030676.1
A0A2K5LJG5
DGCR8
32
LLPS-Cea-4000
ENSCATG00000042394.1
A0A2K5NQD4
DNAJB1
33
LLPS-Cea-0619
ENSCATG00000043015.1
A0A2K5NTV2
DNAJC17
34
LLPS-Cea-0111
ENSCATG00000006231.1
A0A2K5KKW8
DYRK3
35
LLPS-Cea-2419
ENSCATG00000041287.1
A0A2K5NHP8
EGF
36
LLPS-Cea-1243
ENSCATG00000043941.1
A0A2K5NZB0
ERH
37
LLPS-Cea-2768
ENSCATG00000033350.1
A0A2K5M1Q0
EZH1
38
LLPS-Cea-0918
ENSCATG00000014922.1
A0A2K5KTV9
FAM76B
39
LLPS-Cea-2172
ENSCATG00000033419.1
A0A2K5M243
FAM83H
40
LLPS-Cea-0344
ENSCATG00000038556.1
A0A2K5N0J8
FANCD2
41
LLPS-Cea-4305
ENSCATG00000037507.1
A0A2K5MTE4
FANCI
42
LLPS-Cea-4632
ENSCATG00000033897.1
A0A2K5M4X3
FBXL18
43
LLPS-Cea-0688
ENSCATG00000043191.1
A0A2K5NV80
FGFR1
44
LLPS-Cea-3203
ENSCATG00000041016.1
A0A2K5NFZ7
FRMD8
45
LLPS-Cea-2513
ENSCATG00000034413.1
A0A2K5M862
FUS
46
LLPS-Cea-1404
ENSCATG00000037016.1
A0A2K5MPV3
FYTTD1
47
LLPS-Cea-0611
ENSCATG00000036694.1
A0A2K5MMY9
GLI3
48
LLPS-Cea-1349
ENSCATG00000034546.1
A0A2K5MA25
GSK3B
49
LLPS-Cea-0815
ENSCATG00000021209.1
A0A2K5L3X5
HIF1A
50
LLPS-Cea-4367
ENSCATG00000013440.1
A0A2K5KS03
HIF3A
51
LLPS-Cea-3322
ENSCATG00000036105.1
A0A2K5MJL8
HIPK2
52
LLPS-Cea-2436
ENSCATG00000033325.1
A0A2K5M1J4
HNRNPA2B1
53
LLPS-Cea-0098
ENSCATG00000036875.1
A0A2K5MPE9
HNRNPK
54
LLPS-Cea-3535
ENSCATG00000031172.1
A0A2K5LMQ6
HSPA6
55
LLPS-Cea-4735
ENSCATG00000045191.1
A0A2K5P7J9
HSPH1
56
LLPS-Cea-0423
ENSCATG00000045233.1
A0A2K5P7R2
ILF2
57
LLPS-Cea-2816
ENSCATG00000023258.1
A0A2K5L4S9
ILF3
58
LLPS-Cea-2868
ENSCATG00000039810.1
A0A2K5N880
IVNS1ABP
59
LLPS-Cea-0732
ENSCATG00000041326.1
A0A2K5NIM4
LUC7L
60
LLPS-Cea-1121
ENSCATG00000015443.1
A0A2K5KUS6
MAGOH
61
LLPS-Cea-0942
ENSCATG00000040675.1
A0A2K5NE10
NAGK
62
LLPS-Cea-1862
ENSCATG00000030292.1
A0A2K5LH10
NKAP
63
LLPS-Cea-0816
ENSCATG00000039509.1
A0A2K5N6B8
NONO
64
LLPS-Cea-0537
ENSCATG00000035285.1
A0A2K5ME54
NOSIP
65
LLPS-Cea-1350
ENSCATG00000032967.1
A0A2K5LZ53
NR5A1
66
LLPS-Cea-4798
ENSCATG00000038363.1
A0A2K5MZ58
NSRP1
67
LLPS-Cea-1540
ENSCATG00000044068.1
A0A2K5NZR4
NUAK2
68
LLPS-Cea-2169
ENSCATG00000029414.1
A0A2K5LBJ3
OGG1
69
LLPS-Cea-4103
ENSCATG00000022141.1
A0A2K5L384
P2RY12
70
LLPS-Cea-0837
ENSCATG00000015029.1
A0A2K5KU00
PCBP1
71
LLPS-Cea-2015
ENSCATG00000044329.1
A0A2K5P1R2
PLRG1
72
LLPS-Cea-1437
ENSCATG00000032029.1
A0A2K5LTB7
PNN
73
LLPS-Cea-1276
ENSCATG00000032109.1
A0A2K5LU08
PPIG
74
LLPS-Cea-2545
ENSCATG00000041921.1
A0A2K5NLW4
PRPF19
75
LLPS-Cea-1879
ENSCATG00000038595.1
A0A2K5N0C7
PRPF8
76
LLPS-Cea-0725
ENSCATG00000036434.1
A0A2K5MLA7
PSPC1
77
LLPS-Cea-3514
ENSCATG00000027023.1
A0A2K5L7G6
RAPGEF1
78
LLPS-Cea-1947
ENSCATG00000041566.1
A0A2K5NK68
RBM17
79
LLPS-Cea-3447
ENSCATG00000017832.1
A0A2K5KXW0
RBM23
80
LLPS-Cea-1880
ENSCATG00000005967.1
A0A2K5KKM9
RBMX2
81
LLPS-Cea-3821
ENSCATG00000029626.1
A0A2K5LCL1
RNF151
82
LLPS-Cea-1289
ENSCATG00000013756.1
A0A2K5KSF8
RNPS1
83
LLPS-Cea-2584
ENSCATG00000045088.1
A0A2K5P6R6
SARNP
84
LLPS-Cea-2156
ENSCATG00000011564.1
A0A2K5KSH3
SF1
85
LLPS-Cea-2506
ENSCATG00000029241.1
A0A2K5LAX0
SF3A1
86
LLPS-Cea-2277
ENSCATG00000038453.1
A0A2K5MZ87
SF3A2
87
LLPS-Cea-2729
ENSCATG00000043496.1
A0A2K5NWC9
SF3A3
88
LLPS-Cea-0488
ENSCATG00000035735.1
A0A2K5MH21
SF3B1
89
LLPS-Cea-0901
ENSCATG00000009733.1
A0A2K5KNP1
SMAD3
90
LLPS-Cea-1398
ENSCATG00000015790.1
A0A2K5KVL9
SNRNP200
91
LLPS-Cea-3854
ENSCATG00000021946.1
A0A2K5L305
SNRNP35
92
LLPS-Cea-1649
ENSCATG00000016149.1
A0A2K5KVP3
SNRNP70
93
LLPS-Cea-3357
ENSCATG00000032716.1
A0A2K5LXK9
SNRPA
94
LLPS-Cea-1179
ENSCATG00000025462.1
A0A2K5L6A0
SNRPA1
95
LLPS-Cea-1871
ENSCATG00000030861.1
A0A2K5LKT3
SNRPB2
96
LLPS-Cea-0482
ENSCATG00000029812.1
A0A2K5LDZ4
SON
97
LLPS-Cea-2882
ENSCATG00000028294.1
A0A2K5L8N1
SPOP
98
LLPS-Cea-0231
ENSCATG00000038003.1
A0A2K5MWC8
SRRM2
99
LLPS-Cea-3134
ENSCATG00000031598.1
A0A2K5LQZ7
SRSF10
100
LLPS-Cea-0182
ENSCATG00000043613.1
A0A2K5NX58
SRSF11
101
LLPS-Cea-2814
ENSCATG00000033650.1
A0A2K5M3E8
SRSF2
102
LLPS-Cea-0268
ENSCATG00000031850.1
A0A2K5LS47
SRSF3
103
LLPS-Cea-1076
ENSCATG00000031440.1
A0A2K5LPI9
SRSF4
104
LLPS-Cea-1197
ENSCATG00000031728.1
A0A2K5LRC9
SRSF7
105
LLPS-Cea-0914
ENSCATG00000021315.1
A0A2K5L274
SRSF9
106
LLPS-Cea-1181
ENSCATG00000032273.1
A0A2K5LWT6
STAT3
107
LLPS-Cea-3393
ENSCATG00000033980.1
A0A2K5M5E0
TAP1
108
LLPS-Cea-3099
ENSCATG00000029518.1
A0A2K5LD97
TGFBR1
109
LLPS-Cea-0383
ENSCATG00000040153.1
A0A2K5NAJ1
TRA2B
110
LLPS-Cea-3358
ENSCATG00000031048.1
A0A2K5LMA9
TTC14
111
LLPS-Cea-0176
ENSCATG00000004637.1
A0A2K5KJU1
U2AF2
112
LLPS-Cea-2444
ENSCATG00000039024.1
A0A2K5N3G2
U2SURP
113
LLPS-Cea-2182
ENSCATG00000032674.1
A0A2K5LXU0
XPO1
114
LLPS-Cea-3347
ENSCATG00000036320.1
A0A2K5MKH9
YTHDC1
115
LLPS-Cea-0860
ENSCATG00000039923.1
A0A2K5N8Y8
ZC3H11A
116
LLPS-Cea-2062
ENSCATG00000033207.1
A0A2K5M0Y6
ZNF106
117
LLPS-Cea-3240
ENSCATG00000041809.1
A0A2K5NLG9
ZNF131
118
LLPS-Cea-2117
ENSCATG00000037865.1
A0A2K5MVJ5
ZNF688