Brassica rapa      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 58 genes.  Reviewed (0 or Unreviewed (58

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Brr-0001
Bra017971
M4DN84
2
LLPS-Brr-0068
Bra018407
M4DPG6
3
LLPS-Brr-0161
Bra017944
M4DN57
4
LLPS-Brr-0164
Bra012753
M4D8E3
5
LLPS-Brr-0189
Bra012260
M4D700
6
LLPS-Brr-0214
Bra031418
M4ERJ4
7
LLPS-Brr-0295
Bra040447
M4FH69
8
LLPS-Brr-0399
Bra015974
M4DHJ7
9
LLPS-Brr-0424
Bra036530
M4F621
10
LLPS-Brr-0478
Bra027119
M4EEA7
11
LLPS-Brr-0481
Bra005541
M4CMV3
12
LLPS-Brr-0508
Bra023593
M4E490
13
LLPS-Brr-0647
Bra033313
M4EWX8
14
LLPS-Brr-0665
Bra019994
M4DU01
15
LLPS-Brr-0732
Bra011368
M4D4G4
16
LLPS-Brr-0784
Bra016688
M4DJL0
17
LLPS-Brr-0785
Bra036246
M4F590
18
LLPS-Brr-0825
Bra026037
M4EB78
19
LLPS-Brr-0854
Bra026158
M4EBJ9
20
LLPS-Brr-0892
Bra035725
M4F3S5
21
LLPS-Brr-0919
Bra028565
M4EIF0
22
LLPS-Brr-0927
Bra010514
M4D214
23
LLPS-Brr-0931
Bra039704
M4FF32
24
LLPS-Brr-0979
Bra027620
M4EFQ7
25
LLPS-Brr-0984
Bra012098
M4D6I9
26
LLPS-Brr-1008
Bra024276
M4E672
27
LLPS-Brr-1043
Bra010764
M4D2R1
28
LLPS-Brr-1063
Bra025856
M4EAP7
29
LLPS-Brr-1132
Bra034343
M4EZV0
30
LLPS-Brr-1139
Bra028612
M4EIJ7
31
LLPS-Brr-1200
Bra028740
M4EIX5
32
LLPS-Brr-1218
Bra002519
M4CE88
33
LLPS-Brr-1234
Bra005605
M4CN17
34
LLPS-Brr-1238
Bra013431
M4DAC1
35
LLPS-Brr-1247
Bra015322
M4DFP9
36
LLPS-Brr-1250
Bra018163
M4DNS5
37
LLPS-Brr-1320
Bra037770
M4F9K7
38
LLPS-Brr-1372
Bra030327
M4ENF7
39
LLPS-Brr-1396
Bra032400
M4EUB8
40
LLPS-Brr-1527
Bra000304
M4C7X6
41
LLPS-Brr-1600
Bra006263
M4CPX4
42
LLPS-Brr-1694
Bra018581
M4DPZ0
43
LLPS-Brr-1720
Bra021418
M4DY22
44
LLPS-Brr-1753
Bra031477
M4ERQ1
45
LLPS-Brr-1760
Bra033813
M4EYC1
46
LLPS-Brr-1819
Bra023114
M4E2W3
47
LLPS-Brr-1937
Bra032169
M4ETN7
48
LLPS-Brr-2019
Bra029955
M4EMD5
49
LLPS-Brr-2091
Bra021297
M4DXQ1
50
LLPS-Brr-2214
Bra010926
M4D373
51
LLPS-Brr-2251
Bra020661
M4DVW7
52
LLPS-Brr-2451
Bra009848
M4D050
53
LLPS-Brr-2527
Bra034316
M4EZS3
54
LLPS-Brr-2546
Bra036267
M4F5B1
55
LLPS-Brr-2589
Bra014741
M4DE22
56
LLPS-Brr-2626
Bra019993
M4DU00
57
LLPS-Brr-2977
Bra029611
M4ELE3
58
LLPS-Brr-2990
Bra023312
M4E3G0