Brassica oleracea      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 61 genes.  Reviewed (0 or Unreviewed (61

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Bro-0012
Bo5g138180
A0A0D3CLN2
2
LLPS-Bro-0065
Bo9g043500
A0A0D3E564
3
LLPS-Bro-0208
Bo7g097530
A0A0D3DDA2
4
LLPS-Bro-0223
Bo4g065750
A0A0D3BTX5
5
LLPS-Bro-0496
Bo3g035970
A0A0D3B6C2
6
LLPS-Bro-0537
Bo9g140950
A0A0D3ECY0
7
LLPS-Bro-0583
Bo7g014150
A0A0D3D3B5
8
LLPS-Bro-0596
Bo5g009470
A0A0D3C8M9
9
LLPS-Bro-0752
Bo2g010070
A0A0D3AIH4
10
LLPS-Bro-1698
Bo1g153590
A0A0D3AFT2
11
LLPS-Bro-1705
Bo4g145640
A0A0D3C0X0
12
LLPS-Bro-1866
Bo1g093160
A0A0D3AAE7
13
LLPS-Bro-2448
Bo5g120110
A0A0D3CJ16
14
LLPS-Bro-0905
Bo5g148050
A0A0D3CMS5
106293793
15
LLPS-Bro-1733
Bo5g063130
A0A0D3CEX6
106295036
16
LLPS-Bro-0776
Bo5g019860
A0A0D3CA72
106295191
17
LLPS-Bro-0444
Bo5g020610
A0A0D3CAE7
106295306
18
LLPS-Bro-1504
Bo5g022030
A0A0D3CAT9
106296055
19
LLPS-Bro-0285
Bo6g051230
A0A0D3CSD9
106296491
20
LLPS-Bro-2061
Bo6g101230
A0A0D3CYG8
106298302
21
LLPS-Bro-1434
Bo7g049730
A0A0D3D6E8
106301705
22
LLPS-Bro-1781
Bo1g022050
A0A0D3A4I5
106305874
23
LLPS-Bro-0525
Bo7g104100
A0A0D3DEB2
106306101
24
LLPS-Bro-0368
Bo8g099670
A0A0D3DVL6
106307164
25
LLPS-Bro-0720
Bo1g098330
A0A0D3AAR8
106307846
26
LLPS-Bro-1205
Bo1g070830
A0A0D3A8U7
106310358
27
LLPS-Bro-1269
Bo8g058860
A0A0D3DNR8
106311554
28
LLPS-Bro-0080
Bo8g110930
A0A0D3DY94
106312048
29
LLPS-Bro-0254
Bo8g077910
A0A0D3DRN2
106312079
30
LLPS-Bro-1384
Bo8g039430
A0A0D3DLW2
106312680
31
LLPS-Bro-2631
Bo1g094380
A0A0D3AAH0
106312820
32
LLPS-Bro-1328
Bo1g010160
A0A0D3A2J1
106313742
33
LLPS-Bro-2865
Bo9g028850
A0A0D3E3T9
106315503
34
LLPS-Bro-0376
Bo9g018020
A0A0D3E251
106317504
35
LLPS-Bro-0198
Bo9g021700
A0A0D3E2M1
106318338
36
LLPS-Bro-2054
Bo9g011500
A0A0D3E1E5
106318360
37
LLPS-Bro-1307
Bo00615s150
A0A0D2ZQ43
106319787
38
LLPS-Bro-1847
Bo2g007160
A0A0D3AHY2
106320454
39
LLPS-Bro-1880
Bo2g150480
A0A0D3AX08
106321863
40
LLPS-Bro-1084
Bo2g100530
A0A0D3ASC9
106322597
41
LLPS-Bro-2499
Bo1g079010
A0A0D3A9H1
106323083
42
LLPS-Bro-0914
Bo2g010290
A0A0D3AIJ6
106326733
43
LLPS-Bro-2276
Bo2g013400
A0A0D3AJF7
106327033
44
LLPS-Bro-0221
Bo3g009880
A0A0D3B155
106328387
45
LLPS-Bro-2699
Bo3g036560
A0A0D3B6I1
106331667
46
LLPS-Bro-0869
Bo3g101530
A0A0D3BF63
106334578
47
LLPS-Bro-0055
Bo3g149070
A0A0D3BJ51
106334802
48
LLPS-Bro-0605
Bo3g023770
A0A0D3B3Z8
106334824
49
LLPS-Bro-0402
Bo3g134270
A0A0D3BHR1
106335313
50
LLPS-Bro-0293
Bo3g002720
A0A0D3AZN7
106335635
51
LLPS-Bro-0091
Bo4g181820
A0A0D3C3W4
106336732
52
LLPS-Bro-0313
Bo4g116690
A0A0D3BXQ7
106336790
53
LLPS-Bro-2878
Bo4g162630
A0A0D3C2D1
106337250
54
LLPS-Bro-1550
Bo1g156190
A0A0D3AFZ4
106338640
55
LLPS-Bro-0875
Bo4g046100
A0A0D3BSU4
106339366
56
LLPS-Bro-1282
Bo4g161220
A0A0D3C289
106339376
57
LLPS-Bro-2914
Bo4g097010
A0A0D3BW25
106341725
58
LLPS-Bro-1761
Bo4g045420
A0A0D3BSM6
106342740
59
LLPS-Bro-0345
Bo4g151570
A0A0D3C1G7
106342758
60
LLPS-Bro-0904
Bo5g003020
A0A0D3C733
106343365
61
LLPS-Bro-2194
Bo5g143090
A0A0D3CM76
106343491