Blumeria graminis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Blg-0491
BLGH_02640
2
LLPS-Blg-0489
BLGH_05976
N1JN15
BGHDH14_bgh00019
3
LLPS-Blg-0603
BLGH_05133
N1JAP4
BGHDH14_bgh00239
4
LLPS-Blg-0219
BLGH_06025
N1JDC9
BGHDH14_bgh00967
5
LLPS-Blg-0961
BLGH_02165
N1J8W0
BGHDH14_bgh01115
6
LLPS-Blg-0558
BLGH_02902
N1JBD5
BGHDH14_bgh01950
7
LLPS-Blg-0654
BLGH_00310
N1JM11
BGHDH14_bgh02288
8
LLPS-Blg-1152
BLGH_03004
N1JGE2
BGHDH14_bgh02681
9
LLPS-Blg-0436
BLGH_04969
N1J663
BGHDH14_bgh02765
10
LLPS-Blg-0733
BLGH_00078
N1JB48
BGHDH14_bgh02829
11
LLPS-Blg-0200
BLGH_01489
N1JDM7
BGHDH14_bgh02884
12
LLPS-Blg-1575
BLGH_03436
N1JBH6
BGHDH14_bgh03035
13
LLPS-Blg-0311
BLGH_05512
N1JEL1
BGHDH14_bgh03171
14
LLPS-Blg-0054
BLGH_01523
N1JF96
BGHDH14_bgh03230
15
LLPS-Blg-1482
BLGH_06421
N1JN80
BGHDH14_bgh03451
16
LLPS-Blg-0296
BLGH_02007
N1J8A3
BGHDH14_bgh03453
17
LLPS-Blg-1273
BLGH_04997
N1J4U8
BGHDH14_bgh03492
18
LLPS-Blg-0454
BLGH_00951
N1J6R6
BGHDH14_bgh03547
19
LLPS-Blg-0353
BLGH_03027
N1JMQ6
BGHDH14_bgh03551
20
LLPS-Blg-0672
BLGH_03695
N1JP47
BGHDH14_bgh03723
21
LLPS-Blg-0662
BLGH_03586
N1J7F6
BGHDH14_bgh04635
22
LLPS-Blg-0727
BLGH_03587
N1J9F2
BGHDH14_bgh04816
23
LLPS-Blg-1173
BLGH_06563
N1J7R4
BGHDH14_bgh04931
24
LLPS-Blg-0857
BLGH_04071
N1JH17
BGHDH14_bgh05461
25
LLPS-Blg-1101
BLGH_03646
N1J7H5
BGHDH14_bgh05816
26
LLPS-Blg-0319
BLGH_02859
N1J5L1
BGHDH14_bgh06124
27
LLPS-Blg-0275
BLGH_03448
N1JCI1
BGHDH14_bgh06132
28
LLPS-Blg-0159
BLGH_06121
N1JJM9
BGHDH14_bgh06202
29
LLPS-Blg-1038
BLGH_03392
N1JED5
BGHDH14_bgh06541
30
LLPS-Blg-0899
BLGH_04281
N1JBA0
BGHDH14_bgh06752
31
LLPS-Blg-0447
BLGH_04701
N1JEB1
BGHDH14_bghG002148000001001
32
LLPS-Blg-0983
BLGH_02095
N1J855
BGHDH14_bghG002868000001001