Astyanax mexicanus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 104 genes.  Reviewed (0 or Unreviewed (104

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Asm-0022
ENSAMXG00000042216.1
A0A3B1JQJ7
2
LLPS-Asm-0049
ENSAMXG00000020626.2
W5LN25
3
LLPS-Asm-0063
ENSAMXG00000007054.2
W5KI37
4
LLPS-Asm-0083
ENSAMXG00000035172.1
A0A3B1J2J0
5
LLPS-Asm-0129
ENSAMXG00000040320.1
A0A3B1J4M1
6
LLPS-Asm-0145
ENSAMXG00000001353.2
W5K1B1
7
LLPS-Asm-0157
ENSAMXG00000000894.2
W5K021
8
LLPS-Asm-0162
ENSAMXG00000036010.1
A0A3B1KAP5
9
LLPS-Asm-0206
ENSAMXG00000038873.1
A0A3B1IY92
10
LLPS-Asm-0210
ENSAMXG00000037263.1
A0A3B1K9H9
11
LLPS-Asm-0323
ENSAMXG00000003101.2
W5K6G0
12
LLPS-Asm-0328
ENSAMXG00000010896.2
W5KUE9
13
LLPS-Asm-0332
ENSAMXG00000016855.2
W5LC07
14
LLPS-Asm-0430
ENSAMXG00000017837.2
W5LEW2
15
LLPS-Asm-0431
ENSAMXG00000008840.2
A0A3B1JCB0
16
LLPS-Asm-0438
ENSAMXG00000004834.2
W5KBJ4
17
LLPS-Asm-0454
ENSAMXG00000000426.2
W5JYN0
18
LLPS-Asm-0481
ENSAMXG00000038259.1
A0A3B1IYM1
19
LLPS-Asm-0487
ENSAMXG00000005684.2
W5KE81
20
LLPS-Asm-0501
ENSAMXG00000018518.2
W5LGW7
21
LLPS-Asm-0517
ENSAMXG00000036881.1
A0A3B1KFJ6
22
LLPS-Asm-0519
ENSAMXG00000011538.2
W5KW92
23
LLPS-Asm-0531
ENSAMXG00000006660.2
A0A3B1K2E7
24
LLPS-Asm-0660
ENSAMXG00000012704.2
W5KZU3
25
LLPS-Asm-0787
ENSAMXG00000008836.2
W5KND8
26
LLPS-Asm-0826
ENSAMXG00000011547.2
A0A3B1KFB4
27
LLPS-Asm-0856
ENSAMXG00000032428.1
A0A3B1IK76
28
LLPS-Asm-0881
ENSAMXG00000033933.1
A0A3B1JNM1
29
LLPS-Asm-0936
ENSAMXG00000007359.2
W5KJ02
30
LLPS-Asm-0946
ENSAMXG00000042571.1
A0A3B1KA55
31
LLPS-Asm-1065
ENSAMXG00000000806.2
W5JZQ8
32
LLPS-Asm-1117
ENSAMXG00000016978.2
A0A3B1KHL9
33
LLPS-Asm-1146
ENSAMXG00000020354.2
A0A3B1JC41
34
LLPS-Asm-1184
ENSAMXG00000020710.2
A0A3B1KEG7
35
LLPS-Asm-1219
ENSAMXG00000020291.2
W5LM32
36
LLPS-Asm-1274
ENSAMXG00000002219.2
W5K3V5
37
LLPS-Asm-1284
ENSAMXG00000009544.2
A0A3B1IRI3
38
LLPS-Asm-1298
ENSAMXG00000004497.2
W5KAJ6
39
LLPS-Asm-1301
ENSAMXG00000042901.1
A0A3B1IT37
40
LLPS-Asm-1306
ENSAMXG00000001360.2
A0A3B1K2A5
41
LLPS-Asm-1326
ENSAMXG00000008454.2
W5KM73
42
LLPS-Asm-1350
ENSAMXG00000006978.2
W5KHV4
43
LLPS-Asm-1368
ENSAMXG00000041525.1
A0A3B1IRW9
44
LLPS-Asm-1372
ENSAMXG00000008390.2
W5KM26
45
LLPS-Asm-1394
ENSAMXG00000038994.1
A0A3B1KLD2
46
LLPS-Asm-1410
ENSAMXG00000018871.2
A0A3B1IYJ7
47
LLPS-Asm-1451
ENSAMXG00000001029.2
W5K0E0
48
LLPS-Asm-1489
ENSAMXG00000007005.2
W5KHY1
49
LLPS-Asm-1491
ENSAMXG00000036486.1
A0A3B1JZX5
50
LLPS-Asm-1552
ENSAMXG00000010075.2
W5KRY2
51
LLPS-Asm-1600
ENSAMXG00000037984.1
A0A3B1KAQ1
52
LLPS-Asm-1614
ENSAMXG00000033292.1
A0A3B1KIZ8
53
LLPS-Asm-1615
ENSAMXG00000004274.2
A0A3B1IKQ4
54
LLPS-Asm-1657
ENSAMXG00000026163.2
W5LUP3
55
LLPS-Asm-1678
ENSAMXG00000017352.2
W5LDK4
56
LLPS-Asm-1683
ENSAMXG00000035996.1
A0A3B1J8X2
57
LLPS-Asm-1690
ENSAMXG00000013366.2
W5L1P1
58
LLPS-Asm-1697
ENSAMXG00000036424.1
A0A3B1JZ46
59
LLPS-Asm-1846
ENSAMXG00000005020.2
W5KC33
60
LLPS-Asm-1918
ENSAMXG00000009028.2
W5KNW5
61
LLPS-Asm-1950
ENSAMXG00000012276.2
W5KYG3
62
LLPS-Asm-1990
ENSAMXG00000019342.2
A0A3B1KJQ3
63
LLPS-Asm-1992
ENSAMXG00000005853.2
A0A3B1JUP8
64
LLPS-Asm-2002
ENSAMXG00000015547.2
W5L834
65
LLPS-Asm-2013
ENSAMXG00000038943.1
A0A3B1JRN8
66
LLPS-Asm-2040
ENSAMXG00000006189.2
A0A3B1JHL9
67
LLPS-Asm-2129
ENSAMXG00000032885.1
A0A3B1KFT8
68
LLPS-Asm-2131
ENSAMXG00000032281.1
A0A3B1ISY9
69
LLPS-Asm-2148
ENSAMXG00000017429.2
W5LDN4
70
LLPS-Asm-2202
ENSAMXG00000033347.1
A0A3B1KG14
71
LLPS-Asm-2297
ENSAMXG00000008413.2
A0A3B1IBY8
72
LLPS-Asm-2322
ENSAMXG00000042718.1
A0A3B1ILE2
73
LLPS-Asm-2384
ENSAMXG00000008655.2
W5KMY5
74
LLPS-Asm-2444
ENSAMXG00000000502.2
A0A3B1KB10
75
LLPS-Asm-2455
ENSAMXG00000039454.1
A0A3B1JN22
76
LLPS-Asm-2478
ENSAMXG00000016979.2
W5LCD6
77
LLPS-Asm-2549
ENSAMXG00000015244.2
W5L772
78
LLPS-Asm-2561
ENSAMXG00000043436.1
A0A3B1IDI1
79
LLPS-Asm-2609
ENSAMXG00000032452.1
A0A3B1KJ32
80
LLPS-Asm-2636
ENSAMXG00000033067.1
A0A3B1J8B3
81
LLPS-Asm-2680
ENSAMXG00000006181.2
A0A3B1JYR8
82
LLPS-Asm-2710
ENSAMXG00000025976.2
W5LU65
83
LLPS-Asm-2739
ENSAMXG00000038899.1
A0A3B1JXW1
84
LLPS-Asm-2752
ENSAMXG00000014464.2
W5L4Z6
85
LLPS-Asm-2863
ENSAMXG00000009851.2
W5KRA6
86
LLPS-Asm-2939
ENSAMXG00000012482.2
W5KZ20
87
LLPS-Asm-2959
ENSAMXG00000002356.2
A0A3B1K3K5
88
LLPS-Asm-3051
ENSAMXG00000005382.2
A0A3B1JCP4
89
LLPS-Asm-3065
ENSAMXG00000006330.2
A0A3B1IEM4
90
LLPS-Asm-3116
ENSAMXG00000033359.1
A0A3B1IH03
91
LLPS-Asm-3132
ENSAMXG00000009267.2
W5KPL7
92
LLPS-Asm-3342
ENSAMXG00000010800.2
W5KU43
93
LLPS-Asm-3347
ENSAMXG00000038882.1
A0A3B1IPV0
94
LLPS-Asm-3505
ENSAMXG00000005882.2
W5KEL7
95
LLPS-Asm-3565
ENSAMXG00000003082.2
A0A3B1K9B5
96
LLPS-Asm-3612
ENSAMXG00000012632.2
W5KZH4
97
LLPS-Asm-3643
ENSAMXG00000010041.2
W5KRU6
98
LLPS-Asm-3664
ENSAMXG00000003630.2
W5K7Z3
99
LLPS-Asm-3688
ENSAMXG00000034077.1
A0A3B1IZV1
100
LLPS-Asm-3893
ENSAMXG00000037156.1
A0A3B1JPI9
101
LLPS-Asm-3946
ENSAMXG00000032231.1
A0A3B1JYN8
102
LLPS-Asm-3993
ENSAMXG00000000452.2
A0A3B1JRT7
103
LLPS-Asm-0287
ENSAMXG00000014587.2
A0A3B1KLJ8
AGO2
104
LLPS-Asm-1445
ENSAMXG00000039469.1
A0A3B1IEU4
TRA2B (1 of many)