Aspergillus niger      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 35 genes.  Reviewed (0 or Unreviewed (35

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Asni-1322
An01g04310
A2Q8G9
An01g04310
2
LLPS-Asni-1131
An01g07170
A2Q9A2
An01g07170
3
LLPS-Asni-0616
An02g05400
A2QD06
An02g05400
4
LLPS-Asni-1172
An02g10380
A5AAE4
An02g10380
5
LLPS-Asni-0461
An02g11630
A2QEN0
An02g11630
6
LLPS-Asni-0462
An02g13880
A2QFA8
An02g13880
7
LLPS-Asni-1384
An04g01360
A5AAI7
An04g01360
8
LLPS-Asni-0111
An07g02890
A2QMP9
An07g02890
9
LLPS-Asni-1249
An07g02900
A2QMQ0
An07g02900
10
LLPS-Asni-0602
An07g02990
A2QMQ9
An07g02990
11
LLPS-Asni-0821
An07g05140
A2QNC4
An07g05140
12
LLPS-Asni-0423
An07g07420
A5AAU2
An07g07420
13
LLPS-Asni-0619
An08g00070
A2QPT1
An08g00070
14
LLPS-Asni-1159
An08g01040
A2QQ26
An08g01040
15
LLPS-Asni-0706
An08g02800
A2QQK1
An08g02800
16
LLPS-Asni-0002
An11g09900
A5ABN9
An11g09900
17
LLPS-Asni-0239
An12g00730
A2QYC3
An12g00730
18
LLPS-Asni-0242
An12g04060
A2QZ91
An12g04060
19
LLPS-Asni-1335
An12g04120
A2QZ97
An12g04120
20
LLPS-Asni-1019
An13g00070
A2R160
An13g00070
21
LLPS-Asni-1080
An14g00030
A2R2A2
An14g00030
22
LLPS-Asni-0387
An14g02360
A2R2Y2
An14g02360
23
LLPS-Asni-0639
An14g04950
A2R3N8
An14g04950
24
LLPS-Asni-1015
An14g04980
A2R3P1
An14g04980
25
LLPS-Asni-1142
An14g05300
A2R3S3
An14g05300
26
LLPS-Asni-1039
An14g06780
A2R471
An14g06780
27
LLPS-Asni-0483
An15g00170
A2R4E8
An15g00170
28
LLPS-Asni-0965
An16g03890
A2R7K8
An16g03890
29
LLPS-Asni-1398
An16g04390
A2R7Q8
An16g04390
30
LLPS-Asni-0293
An16g08120
A2R8R8
An16g08120
31
LLPS-Asni-0517
An17g02320
A2R9R4
An17g02320
32
LLPS-Asni-0987
An18g02460
A2RAA3
An18g02460
33
LLPS-Asni-0394
An18g05490
A2RB47
An18g05490
34
LLPS-Asni-0667
An18g06600
A2RBG1
An18g06600
35
LLPS-Asni-1591
An18g06800
A2RBI1
An18g06800