Aspergillus nidulans      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 31 genes.  Reviewed (0 or Unreviewed (31

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Asn-0094
ANIA_00059
Q5BHC1
ANIA_00059
2
LLPS-Asn-1600
ANIA_00109
Q5BH71
ANIA_00109
3
LLPS-Asn-0871
ANIA_01340
Q5BDP0
ANIA_01340
4
LLPS-Asn-0777
ANIA_01401
C8VRM0
ANIA_01401
5
LLPS-Asn-0909
ANIA_02184
Q5BB96
ANIA_02184
6
LLPS-Asn-1223
ANIA_02420
Q5BAL0
ANIA_02420
7
LLPS-Asn-0916
ANIA_02737
Q5B9P3
ANIA_02737
8
LLPS-Asn-0189
ANIA_04244
Q5B5D6
ANIA_04244
9
LLPS-Asn-0709
ANIA_04523
Q5B4K7
ANIA_04523
10
LLPS-Asn-1501
ANIA_04665
Q5B465
ANIA_04665
11
LLPS-Asn-0870
ANIA_04760
Q5B3X0
ANIA_04760
12
LLPS-Asn-0803
ANIA_04978
Q5B3A2
ANIA_04978
13
LLPS-Asn-0285
ANIA_05530
Q5B1Q0
ANIA_05530
14
LLPS-Asn-0128
ANIA_05779
C8VFF2
ANIA_05779
15
LLPS-Asn-0868
ANIA_05793
Q5B0Y7
ANIA_05793
16
LLPS-Asn-0555
ANIA_06123
Q5B007
ANIA_06123
17
LLPS-Asn-0452
ANIA_06508
Q5AYX2
ANIA_06508
18
LLPS-Asn-0135
ANIA_06676
Q5AYF4
ANIA_06676
19
LLPS-Asn-1143
ANIA_06681
C8V1L6
ANIA_06681
20
LLPS-Asn-0538
ANIA_06682
Q5AYE8
ANIA_06682
21
LLPS-Asn-0758
ANIA_06903
Q5AXS7
ANIA_06903
22
LLPS-Asn-0571
ANIA_06906
Q5AXS4
ANIA_06906
23
LLPS-Asn-0939
ANIA_06975
C8VB89
ANIA_06975
24
LLPS-Asn-0225
ANIA_08015
Q5AUL5
ANIA_08015
25
LLPS-Asn-0061
ANIA_09119
C8VK82
ANIA_09119
26
LLPS-Asn-1189
ANIA_10194
C8VMF3
ANIA_10194
27
LLPS-Asn-0164
ANIA_10349
C8VJ53
ANIA_10349
28
LLPS-Asn-0876
ANIA_10944
C8VBH3
cef1
29
LLPS-Asn-0991
ANIA_00211
Q5BGW9
lea1
30
LLPS-Asn-0656
ANIA_01208
Q5BE22
prp46
31
LLPS-Asn-0343
ANIA_08865
Q96VK3
ptkA