Aspergillus flavus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Asf-0443
AFLA_004610
B8NQ70
AFLA_004610
2
LLPS-Asf-1364
AFLA_015160
B8N6K3
AFLA_015160
3
LLPS-Asf-0484
AFLA_027900
B8N115
AFLA_027900
4
LLPS-Asf-1225
AFLA_030120
B8N1E7
AFLA_030120
5
LLPS-Asf-0305
AFLA_032260
B8N1S2
AFLA_032260
6
LLPS-Asf-0272
AFLA_037790
B8N2K4
AFLA_037790
7
LLPS-Asf-0692
AFLA_037940
B8N2L9
AFLA_037940
8
LLPS-Asf-0398
AFLA_046270
B8NBQ2
AFLA_046270
9
LLPS-Asf-0664
AFLA_046310
B8NBQ6
AFLA_046310
10
LLPS-Asf-0041
AFLA_048030
B8NSE0
AFLA_048030
11
LLPS-Asf-0190
AFLA_054840
B8ND13
AFLA_054840
12
LLPS-Asf-0964
AFLA_062140
B8NEL6
AFLA_062140
13
LLPS-Asf-0793
AFLA_068930
B8NJT3
AFLA_068930
14
LLPS-Asf-0805
AFLA_071070
B8NK58
AFLA_071070
15
LLPS-Asf-0279
AFLA_074980
B8MWP0
AFLA_074980
16
LLPS-Asf-1242
AFLA_074990
B8MWP1
AFLA_074990
17
LLPS-Asf-0563
AFLA_075060
B8MWP8
AFLA_075060
18
LLPS-Asf-0072
AFLA_079470
B8MY10
AFLA_079470
19
LLPS-Asf-0025
AFLA_088850
B8MWT5
AFLA_088850
20
LLPS-Asf-0200
AFLA_091870
B8NKM1
AFLA_091870
21
LLPS-Asf-0516
AFLA_092960
B8NKP2
AFLA_092960
22
LLPS-Asf-0966
AFLA_093490
B8NKU5
AFLA_093490
23
LLPS-Asf-0264
AFLA_094660
B8NM10
AFLA_094660
24
LLPS-Asf-0829
AFLA_094690
B8NM13
AFLA_094690
25
LLPS-Asf-0275
AFLA_103030
B8NV09
AFLA_103030
26
LLPS-Asf-1372
AFLA_113070
B8NA11
AFLA_113070
27
LLPS-Asf-0665
AFLA_115480
B8NZ36
AFLA_115480
28
LLPS-Asf-0207
AFLA_127530
B8NNE2
AFLA_127530
29
LLPS-Asf-0602
AFLA_129690
B8NNR8
AFLA_129690
30
LLPS-Asf-0872
AFLA_131040
B8NFL3
AFLA_131040
31
LLPS-Asf-0593
AFLA_132080
B8NG47
AFLA_132080
32
LLPS-Asf-0401
AFLA_133000
B8NH76
AFLA_133000
33
LLPS-Asf-0817
AFLA_137290
B8NHN5
AFLA_137290