Arabidopsis lyrata      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 61 genes.  Reviewed (0 or Unreviewed (61

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Arl-2891
scaffold_502451.1
D7LUJ7
AFC1
2
LLPS-Arl-1130
fgenesh1_pm.C_scaffold_1000165
D7KBC9
ARALYDRAFT_311385
3
LLPS-Arl-1908
fgenesh1_pm.C_scaffold_1002717
D7KK48
ARALYDRAFT_313937
4
LLPS-Arl-2273
fgenesh1_pm.C_scaffold_2000318
D7KWR4
ARALYDRAFT_315285
5
LLPS-Arl-0811
fgenesh1_pm.C_scaffold_3000780
D7L8A8
ARALYDRAFT_317764
6
LLPS-Arl-2037
fgenesh1_pm.C_scaffold_5002308
D7LTQ7
ARALYDRAFT_324764
7
LLPS-Arl-2492
fgenesh1_pg.C_scaffold_2000170
D7KU23
ARALYDRAFT_338071
8
LLPS-Arl-0414
fgenesh2_kg.1__949__AT1G09140.1
D7KIY5
ARALYDRAFT_470995
9
LLPS-Arl-1030
fgenesh2_kg.1__1031__AT1G09760.1
D7KJT8
ARALYDRAFT_471077
10
LLPS-Arl-1486
fgenesh2_kg.1__1032__AT1G09770.1
D7KJT9
ARALYDRAFT_471078
11
LLPS-Arl-0547
fgenesh2_kg.1__1666__AT1G15200.1
D7KCN8
ARALYDRAFT_471712
12
LLPS-Arl-0377
fgenesh2_kg.1__1815__AT1G16610.2
D7KEH2
ARALYDRAFT_471861
13
LLPS-Arl-0403
fgenesh2_kg.1__2288__AT1G20960.1
D7KJW4
ARALYDRAFT_472334
14
LLPS-Arl-1052
fgenesh2_kg.1__2600__AT1G23860.3
D7KNJ8
ARALYDRAFT_472646
15
LLPS-Arl-0436
fgenesh2_kg.1__2923__AT1G27650.1
D7KBT2
ARALYDRAFT_472969
16
LLPS-Arl-1605
fgenesh2_kg.1__3230__AT1G30480.1
D7KFK3
ARALYDRAFT_473276
17
LLPS-Arl-2304
fgenesh2_kg.1__3238__AT1G30540.1
D7KFL2
ARALYDRAFT_473284
18
LLPS-Arl-1730
fgenesh2_kg.2__295__AT1G61620.1
D7KVI6
ARALYDRAFT_475165
19
LLPS-Arl-0835
fgenesh2_kg.2__371__AT1G60900.1
D7KW76
ARALYDRAFT_475241
20
LLPS-Arl-0508
fgenesh2_kg.2__775__AT5G51300.3
D7KRY2
ARALYDRAFT_475645
21
LLPS-Arl-0199
fgenesh2_kg.2__2381__AT1G80070.1
D7KX96
ARALYDRAFT_477251
22
LLPS-Arl-0627
fgenesh2_kg.3__212__AT3G02710.1
D7KZK4
ARALYDRAFT_477511
23
LLPS-Arl-2773
fgenesh2_kg.3__714__AT3G06930.1
D7L611
ARALYDRAFT_478013
24
LLPS-Arl-0540
fgenesh2_kg.3__2010__AT3G18165.1
D7L804
ARALYDRAFT_479309
25
LLPS-Arl-1107
fgenesh2_kg.4__268__AT2G23380.1
D7LFA7
ARALYDRAFT_481208
26
LLPS-Arl-0788
fgenesh2_kg.4__640__AT2G27020.1
D7LFI4
ARALYDRAFT_481580
27
LLPS-Arl-0365
fgenesh2_kg.4__687__AT2G27285.1
D7LGV5
ARALYDRAFT_481627
28
LLPS-Arl-1393
fgenesh2_kg.4__1245__AT2G32600.1
D7LF03
ARALYDRAFT_482185
29
LLPS-Arl-0925
fgenesh2_kg.4__2504__AT2G43370.1
D7LK05
ARALYDRAFT_483444
30
LLPS-Arl-0478
fgenesh2_kg.5__1406__AT3G50670.1
D7LTH2
ARALYDRAFT_485414
31
LLPS-Arl-2960
fgenesh2_kg.5__1965__AT3G55460.1
D7LV45
ARALYDRAFT_485973
32
LLPS-Arl-2099
fgenesh2_kg.6__343__AT5G04280.1
D7LXH2
ARALYDRAFT_487209
33
LLPS-Arl-1788
fgenesh2_kg.6__553__AT5G06160.1
D7LZ45
ARALYDRAFT_487419
34
LLPS-Arl-0802
fgenesh2_kg.6__999__AT5G10350.2
D7M2W1
ARALYDRAFT_487865
35
LLPS-Arl-0248
fgenesh2_kg.6__1439__AT5G14640.1
D7M6L5
ARALYDRAFT_488305
36
LLPS-Arl-1764
fgenesh2_kg.7__2728__AT4G15900.1
D7MAB3
ARALYDRAFT_493295
37
LLPS-Arl-0046
fgenesh2_kg.8__1946__AT5G59950.1
D7MT45
ARALYDRAFT_496130
38
LLPS-Arl-0191
fgenesh2_kg.8__2435__AT5G64200.1
D7MR86
ARALYDRAFT_496619
39
LLPS-Arl-1856
fgenesh2_kg.8__2445__AT5G64270.1
D7MR97
ARALYDRAFT_496629
40
LLPS-Arl-1025
scaffold_100164.1
D7KB73
ARALYDRAFT_887370
41
LLPS-Arl-0138
scaffold_100412.1
D7KDF6
ARALYDRAFT_887618
42
LLPS-Arl-0482
scaffold_100694.1
D7KGX2
ARALYDRAFT_887900
43
LLPS-Arl-0973
scaffold_105321.1
D7KM84
ARALYDRAFT_892527
44
LLPS-Arl-2482
scaffold_300359.1
D7L192
ARALYDRAFT_896389
45
LLPS-Arl-0126
scaffold_401383.1
D7LKN8
ARALYDRAFT_901882
46
LLPS-Arl-1043
scaffold_401863.1
D7LFN5
ARALYDRAFT_902362
47
LLPS-Arl-1950
scaffold_501562.1
D7LN25
ARALYDRAFT_905858
48
LLPS-Arl-0306
scaffold_501647.1
D7LNA8
ARALYDRAFT_905943
49
LLPS-Arl-0438
scaffold_501926.1
D7LSI2
ARALYDRAFT_906222
50
LLPS-Arl-0569
scaffold_601098.1
D7M3I9
ARALYDRAFT_909041
51
LLPS-Arl-0084
scaffold_601136.1
D7M3M9
ARALYDRAFT_909079
52
LLPS-Arl-0378
scaffold_601746.1
D7LWW2
ARALYDRAFT_909689
53
LLPS-Arl-2059
scaffold_602432.1
D7M2B5
ARALYDRAFT_910375
54
LLPS-Arl-0240
scaffold_602605.1
D7M3T9
ARALYDRAFT_910548
55
LLPS-Arl-0073
scaffold_703074.1
D7MB95
ARALYDRAFT_915332
56
LLPS-Arl-2275
scaffold_703887.1
D7MJ32
ARALYDRAFT_916145
57
LLPS-Arl-0059
scaffold_801277.1
D7MN77
ARALYDRAFT_917877
58
LLPS-Arl-1513
scaffold_802059.1
D7MV07
ARALYDRAFT_918659
59
LLPS-Arl-1916
fgenesh2_kg.1__1975__AT1G18040.1
D7KGA1
AT_CDCKD_3
60
LLPS-Arl-0157
fgenesh2_kg.1__2285__AT1G20930.1
D7KJ75
CDKB2_2
61
LLPS-Arl-1875
scaffold_102434.1
D7KKT4
OGG1