Xenopus tropicalis      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 96 genes.  Reviewed (4 or Unreviewed (92

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Xet-3965
ENSXETG00000014197.3
K9ZRR1
nup153
2
LLPS-Xet-3965
ENSXETG00000014197.3
K9ZRR1
nup153
3
LLPS-Xet-3964
ENSXETG00000004904.3
J7I6Y1
nup98
4
LLPS-Xet-3964
ENSXETG00000004904.3
J7I6Y1
nup98
5
LLPS-Xet-0291
ENSXETG00000019246.3
L7N3P5
6
LLPS-Xet-1387
ENSXETG00000000667.3
K9J7K8
7
LLPS-Xet-2673
ENSXETG00000030832.1
F6Z2J6
8
LLPS-Xet-3425
ENSXETG00000013041.1
F6QKT0
9
LLPS-Xet-3559
ENSXETG00000023755.3
Q6DJB9
ago2
10
LLPS-Xet-2166
ENSXETG00000027867.2
Q28F55
ak2
11
LLPS-Xet-2588
ENSXETG00000013612.3
F7D9N7
app
12
LLPS-Xet-0045
ENSXETG00000014990.3
F7D5T4
atxn2l
13
LLPS-Xet-0463
ENSXETG00000012032.3
Q28HZ5
aurka
14
LLPS-Xet-2822
ENSXETG00000009376.3
F6S7Y3
c9orf72
15
LLPS-Xet-1804
ENSXETG00000006455.3
K9J7V0
camk2g
16
LLPS-Xet-2489
ENSXETG00000021962.3
F6QIP4
cbx1
17
LLPS-Xet-0758
ENSXETG00000003005.3
F7EJK9
cbx2
18
LLPS-Xet-0172
ENSXETG00000021279.3
F6XNX0
cbx5
19
LLPS-Xet-1417
ENSXETG00000009784.2
F7AK69
ccnt1
20
LLPS-Xet-2394
ENSXETG00000000481.3
Q28II8
cdk7
21
LLPS-Xet-0340
ENSXETG00000024742.2
Q6GLD8
cdk9
22
LLPS-Xet-3150
ENSXETG00000003281.3
Q28IQ9
cirbp
23
LLPS-Xet-0577
ENSXETG00000020324.4
F6WIF1
cpeb2
24
LLPS-Xet-0021
ENSXETG00000009642.3
F7AMH6
cstf2
25
LLPS-Xet-0789
ENSXETG00000003797.3
F6UFG9
cttn
26
LLPS-Xet-2396
ENSXETG00000020372.3
F6RWB7
daxx
27
LLPS-Xet-2918
ENSXETG00000003704.3
F7CGX3
dazap1
28
LLPS-Xet-0079
ENSXETG00000000899.3
F7ADT1
dcp1b
29
LLPS-Xet-0263
ENSXETG00000021514.3
F6TQ63
dcp2
30
LLPS-Xet-0812
ENSXETG00000010061.3
Q0IHV9
ddx6
31
LLPS-Xet-1700
ENSXETG00000033741.1
B3DLZ7
dlgap1
32
LLPS-Xet-3463
ENSXETG00000013037.3
Q0IJ08
dyrk1a
33
LLPS-Xet-3224
ENSXETG00000010622.3
F6VG36
edc3
34
LLPS-Xet-2342
ENSXETG00000009483.3
F7DMA2
eif4g3
35
LLPS-Xet-2184
ENSXETG00000014667.3
Q6DEZ7
esrp1
36
LLPS-Xet-2303
ENSXETG00000024796.2
Q6P3N0
ewsr1
37
LLPS-Xet-0542
ENSXETG00000017830.3
Q6P623
fbl
38
LLPS-Xet-0240
ENSXETG00000014268.3
F6R7N1
flna
39
LLPS-Xet-3159
ENSXETG00000008663.3
F6RGN3
flnb
40
LLPS-Xet-0909
ENSXETG00000019647.3
Q6GLC9
fmr1
41
LLPS-Xet-1212
ENSXETG00000001951.3
Q28EL3
fus
42
LLPS-Xet-2940
ENSXETG00000021344.3
F6S8L5
fyn
43
LLPS-Xet-0627
ENSXETG00000024114.3
Q5RJV1
gar1
44
LLPS-Xet-0831
ENSXETG00000002161.3
F7AR05
gnl2
45
LLPS-Xet-3767
ENSXETG00000012520.3
Q66II3
grb2
46
LLPS-Xet-2598
ENSXETG00000005540.3
F6YEQ5
gspt1
47
LLPS-Xet-1624
ENSXETG00000003833.3
F6ZMQ9
hnrnpa0
48
LLPS-Xet-1157
ENSXETG00000012170.3
F6TA26
hnrnpa2b1
49
LLPS-Xet-1513
ENSXETG00000001806.3
F6VXS3
hnrnpa3
50
LLPS-Xet-1542
ENSXETG00000012569.3
Q537I0
hnrnpd
51
LLPS-Xet-2648
ENSXETG00000023026.2
Q640A2
hnrnpdl
52
LLPS-Xet-1992
ENSXETG00000010136.3
Q0V9A6
homer3
53
LLPS-Xet-0018
ENSXETG00000023496.3
F6YH94
ipo5
54
LLPS-Xet-0624
ENSXETG00000014182.3
F6PVL3
itsn1
55
LLPS-Xet-1957
ENSXETG00000001594.3
F6W296
kpna2
56
LLPS-Xet-0410
ENSXETG00000014717.3
F7DQB5
kpnb1
57
LLPS-Xet-3289
ENSXETG00000015772.2
F6TWA7
lgals3
58
LLPS-Xet-0461
ENSXETG00000024933.2
F7AYB4
lsm4
59
LLPS-Xet-1686
ENSXETG00000019473.3
Q66KA4
map1lc3a
60
LLPS-Xet-0375
ENSXETG00000017405.3
F7E0G6
map1lc3b
61
LLPS-Xet-2880
ENSXETG00000003240.3
F6QX04
mapt
62
LLPS-Xet-1476
ENSXETG00000018741.3
B1WAR9
mastl
63
LLPS-Xet-3946
ENSXETG00000014883.3
F7CTX3
nbr1
64
LLPS-Xet-3852
ENSXETG00000022688.3
Q66IL5
nck1
65
LLPS-Xet-3866
ENSXETG00000017513.3
F7BA02
nphs1
66
LLPS-Xet-1010
ENSXETG00000008403.3
Q6PBF8
npm1
67
LLPS-Xet-1447
ENSXETG00000009637.3
Q6P2Y9
nup62
68
LLPS-Xet-2658
ENSXETG00000010946.3
K9J821
pabpc4
69
LLPS-Xet-2047
ENSXETG00000005206.3
F6W2Y6
pkm
70
LLPS-Xet-1145
ENSXETG00000010344.3
P62205
plk1
71
LLPS-Xet-0598
ENSXETG00000012465.3
F7BLR6
polr2a
72
LLPS-Xet-1807
ENSXETG00000011138.3
F6R539
prkaa2
73
LLPS-Xet-2514
ENSXETG00000002877.3
Q28F07
prmt1
74
LLPS-Xet-0915
ENSXETG00000021661.3
F6YXS8
ptbp1
75
LLPS-Xet-2681
ENSXETG00000020236.3
F6U870
rbfox3
76
LLPS-Xet-0148
ENSXETG00000026650.2
F6Z268
rbm14
77
LLPS-Xet-0127
ENSXETG00000026189.2
Q6DEP9
rpl23a
78
LLPS-Xet-1505
ENSXETG00000023004.3
F7DSA5
rpl5
79
LLPS-Xet-1724
ENSXETG00000014009.3
F6W6S7
sgo1
80
LLPS-Xet-1696
ENSXETG00000015689.3
F6ZPR5
shank3
81
LLPS-Xet-1887
ENSXETG00000008386.3
F7EBQ3
sos1
82
LLPS-Xet-0929
ENSXETG00000015913.3
F6TMS2
sqstm1
83
LLPS-Xet-0070
ENSXETG00000005018.3
A0A1B8Y594
surf6
84
LLPS-Xet-0235
ENSXETG00000020358.3
F7CMD4
syngap1
85
LLPS-Xet-1219
ENSXETG00000013477.3
F6X9W9
taf15
86
LLPS-Xet-0137
ENSXETG00000006317.3
Q28F51
tardbp
87
LLPS-Xet-0086
ENSXETG00000008514.3
F6YMA9
tia1
88
LLPS-Xet-0771
ENSXETG00000010234.3
F6TPX4
tial1
89
LLPS-Xet-1298
ENSXETG00000016812.3
F6ZF74
tnpo1
90
LLPS-Xet-2591
ENSXETG00000006327.4
F6T3B8
tnrc6b
91
LLPS-Xet-1599
ENSXETG00000025055.2
F7A9U0
tp53
92
LLPS-Xet-1038
ENSXETG00000024158.3
Q6DJ18
ubxn6
93
LLPS-Xet-0725
ENSXETG00000030849.1
L7N351
ubxn8
94
LLPS-Xet-1823
ENSXETG00000022129.3
Q6NX29
wasl
95
LLPS-Xet-2655
ENSXETG00000002224.3
F7EP94
xpo1
96
LLPS-Xet-2440
ENSXETG00000026635.2
F6ZA11
znf207