Vitis vinifera      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 42 genes.  Reviewed (0 or Unreviewed (42

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Viv-0290
VIT_07s0005g00230
D7U272
LSM4
2
LLPS-Viv-1623
VIT_00s0125g00270
F6H2R2
VIT_00s0125g00270
3
LLPS-Viv-1785
VIT_01s0010g02770
F6HG55
VIT_01s0010g02770
4
LLPS-Viv-1967
VIT_01s0011g05570
F6HFE6
VIT_01s0011g05570
5
LLPS-Viv-1234
VIT_02s0025g03150
F6HUA4
VIT_02s0025g03150
6
LLPS-Viv-0022
VIT_03s0017g02160
D7TUG1
VIT_03s0017g02160
7
LLPS-Viv-0806
VIT_03s0038g02830
D7U509
VIT_03s0038g02830
8
LLPS-Viv-1825
VIT_03s0063g00070
F6HQ88
VIT_03s0063g00070
9
LLPS-Viv-2003
VIT_03s0063g02610
F6HQM5
VIT_03s0063g02610
10
LLPS-Viv-1837
VIT_03s0088g00380
F6HBQ3
VIT_03s0088g00380
11
LLPS-Viv-0559
VIT_04s0008g00530
D7STJ9
VIT_04s0008g00530
12
LLPS-Viv-0195
VIT_04s0008g02930
D7SU59
VIT_04s0008g02930
13
LLPS-Viv-1441
VIT_04s0044g00080
F6I0K0
VIT_04s0044g00080
14
LLPS-Viv-0143
VIT_05s0094g00870
F6HAX5
VIT_05s0094g00870
15
LLPS-Viv-1524
VIT_06s0004g00130
F6GUP4
VIT_06s0004g00130
16
LLPS-Viv-1132
VIT_06s0004g00500
F6GUN0
VIT_06s0004g00500
17
LLPS-Viv-0257
VIT_06s0004g00850
F6GUJ5
VIT_06s0004g00850
18
LLPS-Viv-0822
VIT_07s0031g00600
D7SVX4
VIT_07s0031g00600
19
LLPS-Viv-0578
VIT_07s0255g00070
F6I7D4
VIT_07s0255g00070
20
LLPS-Viv-2093
VIT_08s0007g02870
D7TJB2
VIT_08s0007g02870
21
LLPS-Viv-0783
VIT_08s0007g07410
D7TI65
VIT_08s0007g07410
22
LLPS-Viv-1220
VIT_08s0040g00720
F6HQQ4
VIT_08s0040g00720
23
LLPS-Viv-2289
VIT_08s0040g02630
F6HQY1
VIT_08s0040g02630
24
LLPS-Viv-0158
VIT_09s0002g01560
D7TZU9
VIT_09s0002g01560
25
LLPS-Viv-2281
VIT_09s0018g01880
D7T448
VIT_09s0018g01880
26
LLPS-Viv-0866
VIT_11s0016g00700
F6HGN2
VIT_11s0016g00700
27
LLPS-Viv-1490
VIT_11s0052g00820
D7SQB3
VIT_11s0052g00820
28
LLPS-Viv-0811
VIT_12s0057g00880
F6HHN8
VIT_12s0057g00880
29
LLPS-Viv-0917
VIT_13s0019g04310
D7TM92
VIT_13s0019g04310
30
LLPS-Viv-1140
VIT_14s0006g02280
D7TSY3
VIT_14s0006g02280
31
LLPS-Viv-0213
VIT_15s0021g02200
D7SLU6
VIT_15s0021g02200
32
LLPS-Viv-0716
VIT_15s0024g00620
D7UB91
VIT_15s0024g00620
33
LLPS-Viv-0335
VIT_15s0046g03200
A5C9D5
VIT_15s0046g03200
34
LLPS-Viv-0242
VIT_16s0039g02220
A5BVQ5
VIT_16s0039g02220
35
LLPS-Viv-1001
VIT_16s0050g00880
F6H6E9
VIT_16s0050g00880
36
LLPS-Viv-1010
VIT_16s0098g01630
E0CV68
VIT_16s0098g01630
37
LLPS-Viv-0853
VIT_17s0000g02860
F6GTT4
VIT_17s0000g02860
38
LLPS-Viv-1109
VIT_17s0000g07330
F6GSZ1
VIT_17s0000g07330
39
LLPS-Viv-1702
VIT_17s0000g09280
F6GTR9
VIT_17s0000g09280
40
LLPS-Viv-0184
VIT_18s0001g00860
F6H0D9
VIT_18s0001g00860
41
LLPS-Viv-1172
VIT_18s0001g01800
F6HJC7
VIT_18s0001g01800
42
LLPS-Viv-1215
VIT_19s0014g02990
F6H262
VIT_19s0014g02990