Setaria italica      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 38 genes.  Reviewed (0 or Unreviewed (38

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Sei-0297
SETIT_003252mg
2
LLPS-Sei-0184
SETIT_035065mg
K4A859
101752574
3
LLPS-Sei-0230
SETIT_030203mg
K3ZUC2
101752761
4
LLPS-Sei-0167
SETIT_021165mg
K3Z3P7
101754033
5
LLPS-Sei-0642
SETIT_028746mg
K3ZQ66
101754537
6
LLPS-Sei-1392
SETIT_002441mg
K3XKL8
101757314
7
LLPS-Sei-2361
SETIT_022780mg
K3Z8B0
101760788
8
LLPS-Sei-0192
SETIT_017895mg
K3YUE9
101762213
9
LLPS-Sei-1100
SETIT_034064mg
K4A5B0
101763385
10
LLPS-Sei-0697
SETIT_002374mg
K3XKF1
101764495
11
LLPS-Sei-1381
SETIT_009571mg
K3Y5T2
101769033
12
LLPS-Sei-0070
SETIT_030149mg
K3ZU68
101773168
13
LLPS-Sei-0064
SETIT_017805mg
K3YU59
101774232
14
LLPS-Sei-1345
SETIT_030356mg
K3ZUS5
101776815
15
LLPS-Sei-2046
SETIT_025940mg
K3ZH88
101776833
16
LLPS-Sei-0756
SETIT_024149mg
K3ZC75
101780106
17
LLPS-Sei-0446
SETIT_011236mg
K3YAJ8
101781149
18
LLPS-Sei-1689
SETIT_022140mg
K3Z6H1
101781985
19
LLPS-Sei-1476
SETIT_039110mg
K4AJN9
101782013
20
LLPS-Sei-0010
SETIT_026888mg
K3ZJY4
101783998
21
LLPS-Sei-0345
SETIT_014096mg
K3YIM7
101784763
22
LLPS-Sei-0689
SETIT_023101mg
K3Z980
101785067
23
LLPS-Sei-1440
SETIT_016927mg
K3YRN3
101786376
24
LLPS-Sei-0185
SETIT_016856mg
K3YRG2
101786486
25
LLPS-Sei-1690
SETIT_016687mg
K3YQZ3
101786488
26
LLPS-Sei-0668
SETIT_028775mg
A0A368PXU9
SETIT_2G111900v2
27
LLPS-Sei-1801
SETIT_029883mg
A0A368Q148
SETIT_2G200500v2
28
LLPS-Sei-1203
SETIT_032662mg
A0A368Q795
SETIT_2G381300v2
29
LLPS-Sei-0362
SETIT_000965mg
A0A368RAH6
SETIT_5G305000v2
30
LLPS-Sei-0472
SETIT_000473mg
A0A368RDR3
SETIT_5G387300v2
31
LLPS-Sei-0144
SETIT_013525mg
A0A368RNS4
SETIT_6G212200v2
32
LLPS-Sei-0291
SETIT_012624mg
A0A368RXF6
SETIT_7G185500v2
33
LLPS-Sei-1316
SETIT_009305mg
A0A368S2Q7
SETIT_7G335200v2
34
LLPS-Sei-2194
SETIT_027602mg
A0A368S4I0
SETIT_8G054300v2
35
LLPS-Sei-2123
SETIT_027380mg
A0A368S4Y5
SETIT_8G067000v2
36
LLPS-Sei-0722
SETIT_028000mg
A0A368S7N6
SETIT_8G135500v2
37
LLPS-Sei-1018
SETIT_026655mg
A0A368S9L5
SETIT_8G198900v2
38
LLPS-Sei-1278
SETIT_036395mg
A0A368SLD7
SETIT_9G278400v2