Oryzias latipes      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 83 genes.  Reviewed (0 or Unreviewed (83

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orl-3543
ENSORLG00000007388.2
H2LT42
AK2
2
LLPS-Orl-0605
ENSORLG00000005631.2
H2LM09
aurka
3
LLPS-Orl-2006
ENSORLG00000017631.2
H2MTG2
c22h9orf72
4
LLPS-Orl-0262
ENSORLG00000022226.1
A0A3B3HW92
cbx1
5
LLPS-Orl-2763
ENSORLG00000023199.1
A0A3B3HGG1
cbx5
6
LLPS-Orl-1265
ENSORLG00000008836.2
A0A3B3I852
cdk7
7
LLPS-Orl-0327
ENSORLG00000018273.2
H2MVN9
cdk9
8
LLPS-Orl-0065
ENSORLG00000015433.2
H2MKV1
cirbp
9
LLPS-Orl-0583
ENSORLG00000016222.2
H2MNK4
cpeb2
10
LLPS-Orl-0784
ENSORLG00000001380.2
H2L798
cstf2
11
LLPS-Orl-2247
ENSORLG00000000034.2
H2L2U4
cttn
12
LLPS-Orl-3403
ENSORLG00000003707.2
A0A3B3IIB9
dab2ip
13
LLPS-Orl-0144
ENSORLG00000008278.2
H2LWA4
dazap1
14
LLPS-Orl-0485
ENSORLG00000014000.3
H2MG19
dcp1b
15
LLPS-Orl-0646
ENSORLG00000019046.2
H2MXS9
dcp2
16
LLPS-Orl-0096
ENSORLG00000020672.2
A0A3B3HMV7
ddx4
17
LLPS-Orl-0190
ENSORLG00000002506.2
A0A3B3HCA6
ddx6
18
LLPS-Orl-1083
ENSORLG00000010388.2
A0A3B3IDA8
dlgap1
19
LLPS-Orl-2928
ENSORLG00000005417.3
A0A3B3I4M3
dyrk1a
20
LLPS-Orl-0769
ENSORLG00000017007.2
H2MRA0
eif4g3
21
LLPS-Orl-2252
ENSORLG00000006712.2
H2LQT4
ewsr1
22
LLPS-Orl-0117
ENSORLG00000003405.2
H2LE67
fbl
23
LLPS-Orl-3973
ENSORLG00000009094.2
H2LZ37
fmr1
24
LLPS-Orl-1606
ENSORLG00000020583.2
H2N230
gar1
25
LLPS-Orl-3646
ENSORLG00000014645.2
H2MI81
gnl2
26
LLPS-Orl-1653
ENSORLG00000015246.2
H2MK89
grb2
27
LLPS-Orl-0729
ENSORLG00000002867.2
A0A3B3HH22
gspt1
28
LLPS-Orl-1219
ENSORLG00000006133.2
H2LNT4
ipo5
29
LLPS-Orl-0159
ENSORLG00000019936.2
H2N069
kpnb1
30
LLPS-Orl-0649
ENSORLG00000024062.1
A0A3B3HH99
lbr
31
LLPS-Orl-2908
ENSORLG00000017463.2
H2MSU5
LOC101155936
32
LLPS-Orl-0311
ENSORLG00000018435.2
A0A3B3H762
LOC101155983
33
LLPS-Orl-3000
ENSORLG00000004615.2
H2LIH8
LOC101156100
34
LLPS-Orl-4073
ENSORLG00000013453.2
A0A3B3HD51
LOC101157019
35
LLPS-Orl-0027
ENSORLG00000015642.2
H2MLK2
LOC101158614
36
LLPS-Orl-2412
ENSORLG00000006845.2
H2LRA2
LOC101159214
37
LLPS-Orl-2022
ENSORLG00000004170.2
A0A3B3I598
LOC101159287
38
LLPS-Orl-2043
ENSORLG00000027099.1
A0A3B3HMI8
LOC101160561
39
LLPS-Orl-4059
ENSORLG00000005450.2
H2LLE8
LOC101161005
40
LLPS-Orl-1972
ENSORLG00000009189.2
H2LZF6
LOC101161201
41
LLPS-Orl-2540
ENSORLG00000025640.1
A0A3B3I686
LOC101161371
42
LLPS-Orl-0524
ENSORLG00000016229.2
A0A3B3HQL4
LOC101163690
43
LLPS-Orl-1343
ENSORLG00000027417.1
A0A3B3H6H3
LOC101165870
44
LLPS-Orl-2700
ENSORLG00000004232.3
H2LH46
LOC101167184
45
LLPS-Orl-1341
ENSORLG00000003593.2
H2LEV4
LOC101167445
46
LLPS-Orl-0638
ENSORLG00000006837.2
A0A3B3HQ20
LOC101167464
47
LLPS-Orl-3473
ENSORLG00000023176.1
A0A3B3I810
LOC101168026
48
LLPS-Orl-0238
ENSORLG00000028803.1
A0A3B3ICA2
LOC101168810
49
LLPS-Orl-1032
ENSORLG00000004883.2
A0A3B3I8D7
LOC101169936
50
LLPS-Orl-2269
ENSORLG00000004943.2
H2LJN4
LOC101170426
51
LLPS-Orl-0134
ENSORLG00000001642.2
A0A3B3I741
LOC101170539
52
LLPS-Orl-1994
ENSORLG00000001833.2
H2L8V3
LOC101171014
53
LLPS-Orl-1477
ENSORLG00000014922.2
A0A3B3I7T3
LOC101172611
54
LLPS-Orl-1847
ENSORLG00000011955.2
H2M900
LOC101173047
55
LLPS-Orl-1422
ENSORLG00000001982.2
A0A3B3HZ67
LOC101173301
56
LLPS-Orl-0923
ENSORLG00000006059.2
H2LNI8
LOC101175201
57
LLPS-Orl-0892
ENSORLG00000008391.2
H2LWP3
LSM4
58
LLPS-Orl-2754
ENSORLG00000015344.2
H2MKJ6
lyz
59
LLPS-Orl-4021
ENSORLG00000024693.1
A0A3B3H4S9
map1lc3a
60
LLPS-Orl-0203
ENSORLG00000028390.1
A0A090DC16
MAP1LC3B
61
LLPS-Orl-3561
ENSORLG00000012841.2
A0A3B3IAZ6
mastl
62
LLPS-Orl-1861
ENSORLG00000009923.2
H2M213
nck1
63
LLPS-Orl-3436
ENSORLG00000006671.2
H2LQN1
nphs1
64
LLPS-Orl-2920
ENSORLG00000012674.2
H2MBF7
nup153
65
LLPS-Orl-2396
ENSORLG00000030300.1
A0A3B3I5M3
nup98
66
LLPS-Orl-1335
ENSORLG00000002691.2
A0A3B3HJ84
pabpc1
67
LLPS-Orl-0090
ENSORLG00000009603.2
A0A3B3IBE9
PLK1
68
LLPS-Orl-0515
ENSORLG00000006431.2
A0A3B3I257
polr2a
69
LLPS-Orl-0169
ENSORLG00000003787.2
H2LFH6
prkaa1
70
LLPS-Orl-1761
ENSORLG00000017181.2
H2MRW3
prmt1
71
LLPS-Orl-1000
ENSORLG00000011430.2
U6C5P8
ptbp1a
72
LLPS-Orl-2404
ENSORLG00000005524.2
H2LLN8
rpl23a
73
LLPS-Orl-2062
ENSORLG00000013764.2
H2MF90
RPL5 (1 of many)
74
LLPS-Orl-2871
ENSORLG00000012177.2
H2M9P3
sgo1
75
LLPS-Orl-3025
ENSORLG00000019899.2
A0A3B3H4V9
sos1
76
LLPS-Orl-1867
ENSORLG00000020572.2
H2N214
sqstm1
77
LLPS-Orl-0511
ENSORLG00000003980.2
H2LG83
surf6
78
LLPS-Orl-3380
ENSORLG00000004447.2
A0A3B3I0L7
syn2
79
LLPS-Orl-3234
ENSORLG00000005188.2
A0A3B3I3X8
tardbp
80
LLPS-Orl-1229
ENSORLG00000013798.2
A0A3B3H5P6
tial1
81
LLPS-Orl-0243
ENSORLG00000015178.2
H2MK16
ubxn6
82
LLPS-Orl-2068
ENSORLG00000026804.1
A0A3B3ICR9
wasl
83
LLPS-Orl-2299
ENSORLG00000023077.1
A0A3B3H5P8
ZNF207 (1 of many)