Oryza barthii      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 35 genes.  Reviewed (0 or Unreviewed (35

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orb-0069
OBART04G30720
A0A0D3G234
2
LLPS-Orb-0077
OBART11G10980
A0A0D3HL08
3
LLPS-Orb-0107
OBART11G04740
A0A0D3HIV1
4
LLPS-Orb-0159
OBART03G17410
A0A0D3FII2
5
LLPS-Orb-0170
OBART02G36540
A0A0D3FBT4
6
LLPS-Orb-0174
OBART07G22140
A0A0D3GTI1
7
LLPS-Orb-0194
OBART03G41660
A0A0D3FRL5
8
LLPS-Orb-0223
OBART11G17920
A0A0D3HNC2
9
LLPS-Orb-0248
OBART08G07620
A0A0D3GXZ4
10
LLPS-Orb-0259
OBART07G19620
A0A0D3GSP8
11
LLPS-Orb-0262
OBART08G10190
A0A0D3GYU6
12
LLPS-Orb-0272
OBART11G02030
A0A0D3HHU3
13
LLPS-Orb-0314
OBART07G18300
A0A0D3GSA5
14
LLPS-Orb-0457
OBART03G35250
A0A0D3FPG3
15
LLPS-Orb-0574
OBART04G29690
A0A0D3G1Q8
16
LLPS-Orb-0909
OBART11G20020
A0A0D3HP21
17
LLPS-Orb-0954
OBART10G14960
A0A0D3HFD8
18
LLPS-Orb-1091
OBART05G05040
A0A0D3G3T5
19
LLPS-Orb-1165
OBART01G14620
A0A0D3ENH8
20
LLPS-Orb-1208
OBART12G16230
A0A0D3HVV1
21
LLPS-Orb-1318
OBART03G05390
A0A0D3FEF3
22
LLPS-Orb-1366
OBART02G16670
A0A0D3F566
23
LLPS-Orb-1392
OBART12G04040
A0A0D3HRT7
24
LLPS-Orb-1435
OBART07G05630
A0A0D3GN53
25
LLPS-Orb-1504
OBART07G08890
A0A0D3GP65
26
LLPS-Orb-1582
OBART07G10850
A0A0D3GPT4
27
LLPS-Orb-1615
OBART05G15300
A0A0D3G794
28
LLPS-Orb-1625
OBART09G19610
A0A0D3HA16
29
LLPS-Orb-1854
OBART09G09670
A0A0D3H6N5
30
LLPS-Orb-1866
OBART03G26320
A0A0D3FLC9
31
LLPS-Orb-1971
OBART05G03580
A0A0D3G3B7
32
LLPS-Orb-2028
OBART04G05750
A0A0D3FTK2
33
LLPS-Orb-2036
OBART06G28190
A0A0D3GL39
34
LLPS-Orb-2279
OBART05G23640
A0A0D3GA30
35
LLPS-Orb-0753
OBART01G09880
A0A0D3ELX6
LSM4