Danio rerio      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 94 genes.  Reviewed (2 or Unreviewed (92

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Dar-0008
ENSDARG00000070846.8
A0A0R4IAW9
dazap1
2
LLPS-Dar-0001
ENSDARG00000053912.5
Q7ZTZ4
fbl
3
LLPS-Dar-0137
ENSDARG00000059246.7
4
LLPS-Dar-0444
ENSDARG00000004452.10
5
LLPS-Dar-2257
ENSDARG00000035427.8
6
LLPS-Dar-1445
ENSDARG00000061268.6
E7EXY4
ago2
7
LLPS-Dar-2427
ENSDARG00000005926.6
Q1L8L9
ak2
8
LLPS-Dar-3358
ENSDARG00000055543.8
B0V0E5
appb
9
LLPS-Dar-1962
ENSDARG00000052897.6
A2CF31
atxn2
10
LLPS-Dar-0492
ENSDARG00000012485.8
F1QEM3
aurka
11
LLPS-Dar-4075
ENSDARG00000056206.8
A0A0R4IQT3
camk2g2
12
LLPS-Dar-2748
ENSDARG00000054442.7
Q6IQ71
cbx1b
13
LLPS-Dar-3305
ENSDARG00000044938.7
F1Q982
cbx2
14
LLPS-Dar-2241
ENSDARG00000061187.7
A1L223
cbx5
15
LLPS-Dar-2552
ENSDARG00000017525.10
B8A521
ccnt1
16
LLPS-Dar-0031
ENSDARG00000051916.6
Q2V6H0
cdk7
17
LLPS-Dar-2196
ENSDARG00000044811.9
Q7T3L5
cdk9
18
LLPS-Dar-2141
ENSDARG00000103672.2
Q566W6
cirbpa
19
LLPS-Dar-2830
ENSDARG00000052604.6
F1R034
cpeb2
20
LLPS-Dar-1265
ENSDARG00000090788.4
A0A0R4I9I2
cstf2
21
LLPS-Dar-2039
ENSDARG00000011777.11
F1Q932
cttn
22
LLPS-Dar-3879
ENSDARG00000075110.5
A5PF31
dab2ipb
23
LLPS-Dar-1930
ENSDARG00000000729.12
Q1LUU4
daxx
24
LLPS-Dar-1078
ENSDARG00000100136.3
A0A0R4IBD6
dcp1a
25
LLPS-Dar-0412
ENSDARG00000104242.2
Q803B9
dcp2
26
LLPS-Dar-2253
ENSDARG00000020573.10
B0S6P6
ddx3xa
27
LLPS-Dar-0036
ENSDARG00000014373.11
E7EZA2
ddx4
28
LLPS-Dar-0525
ENSDARG00000018425.9
E7F1G8
ddx61
29
LLPS-Dar-0021
ENSDARG00000041926.7
F1QCS0
dlg4a
30
LLPS-Dar-0904
ENSDARG00000014280.7
Q7ZYZ6
dlgap1
31
LLPS-Dar-2011
ENSDARG00000023814.11
F1Q693
dyrk1ab
32
LLPS-Dar-0626
ENSDARG00000051931.5
Q502M5
edc3
33
LLPS-Dar-1741
ENSDARG00000077215.6
A0A140LGN9
eif4g3a
34
LLPS-Dar-1400
ENSDARG00000018814.12
Q7ZVR8
esrp2
35
LLPS-Dar-4099
ENSDARG00000114284.1
A0A0B4J1A5
ewsr1a
36
LLPS-Dar-0179
ENSDARG00000074201.5
E9QI62
flna
37
LLPS-Dar-3748
ENSDARG00000011370.12
Q6EWH2
fyna
38
LLPS-Dar-3049
ENSDARG00000076526.6
Q7ZVE0
gar1
39
LLPS-Dar-0211
ENSDARG00000098080.2
A0A0R4IXF1
gnl2
40
LLPS-Dar-3113
ENSDARG00000038059.7
Q6PC73
grb2b
41
LLPS-Dar-3313
ENSDARG00000098627.2
Q7T358
gspt1l
42
LLPS-Dar-2203
ENSDARG00000036161.8
Q7ZU48
hnrnpa0l
43
LLPS-Dar-2139
ENSDARG00000003429.9
Q7SXN2
hnrnpdl
44
LLPS-Dar-3738
ENSDARG00000005551.11
F1QFJ8
hnrnph1l
45
LLPS-Dar-2732
ENSDARG00000010789.10
F1QBC1
homer3b
46
LLPS-Dar-2825
ENSDARG00000000086.12
A8E7E7
itsn1
47
LLPS-Dar-0438
ENSDARG00000038066.9
F1QG82
kpna2
48
LLPS-Dar-0188
ENSDARG00000104889.2
A0A0R4IMZ8
kpnb1
49
LLPS-Dar-2296
ENSDARG00000040245.9
B8JHR9
kpnb3
50
LLPS-Dar-2361
ENSDARG00000014013.11
Q5RJ97
lbr
51
LLPS-Dar-3203
ENSDARG00000077850.5
A0A0R4I9F2
lgals3a
52
LLPS-Dar-1233
ENSDARG00000023852.8
Q6P6E4
lsm4
53
LLPS-Dar-3757
ENSDARG00000057789.4
A0A2R8RWI8
lyz
54
LLPS-Dar-2627
ENSDARG00000033609.4
Q6NX90
map1lc3a
55
LLPS-Dar-1552
ENSDARG00000101127.2
Q7ZUD8
map1lc3b
56
LLPS-Dar-3839
ENSDARG00000077297.5
E9QEG9
nbr1a
57
LLPS-Dar-0944
ENSDARG00000075369.5
E7F6M0
nck1b
58
LLPS-Dar-4049
ENSDARG00000060758.7
A0A2R8QLU2
nphs1
59
LLPS-Dar-0314
ENSDARG00000014329.11
F1QGI4
npm1a
60
LLPS-Dar-1293
ENSDARG00000099972.2
A0A0R4IVZ0
nup153
61
LLPS-Dar-0484
ENSDARG00000020527.13
A0A2R8QTE7
nup62l
62
LLPS-Dar-0859
ENSDARG00000074955.7
E7F981
nup98
63
LLPS-Dar-0071
ENSDARG00000017219.11
F1QB54
pabpc1a
64
LLPS-Dar-1153
ENSDARG00000099730.3
A0A0R4IGP6
pkma
65
LLPS-Dar-0277
ENSDARG00000058471.5
Q6DRK7
plk1
66
LLPS-Dar-2178
ENSDARG00000010773.13
F1R844
pnpla6
67
LLPS-Dar-1436
ENSDARG00000099966.2
A0A0R4IMS9
polr2a
68
LLPS-Dar-2249
ENSDARG00000060641.7
E7F9C4
prkaa2
69
LLPS-Dar-2460
ENSDARG00000010246.10
F1R3J9
prmt1
70
LLPS-Dar-0629
ENSDARG00000006621.11
Q1JPY8
pspc1
71
LLPS-Dar-2734
ENSDARG00000019362.10
Q503D3
ptbp1a
72
LLPS-Dar-3450
ENSDARG00000056783.6
Q90271
raraa
73
LLPS-Dar-0980
ENSDARG00000014746.11
Q642J5
rbfox1
74
LLPS-Dar-1457
ENSDARG00000006316.8
F1QGI3
rpl23a
75
LLPS-Dar-0340
ENSDARG00000020197.8
Q7ZUI0
rpl5a
76
LLPS-Dar-3384
ENSDARG00000103907.2
F1RCC6
sgo1
77
LLPS-Dar-1443
ENSDARG00000116410.1
A0A2R8QSQ5
shank3a
78
LLPS-Dar-1469
ENSDARG00000075014.5
F1Q5Z8
sqstm1
79
LLPS-Dar-2951
ENSDARG00000060368.7
B0UXI4
syn1
80
LLPS-Dar-0918
ENSDARG00000101054.3
A0A0R4IJU5
syn2b
81
LLPS-Dar-2318
ENSDARG00000069765.8
E7F1U4
syngap1b
82
LLPS-Dar-3129
ENSDARG00000116205.1
A0A2R8QEL5
tardbpl
83
LLPS-Dar-0236
ENSDARG00000052536.5
A0A2R8QPL1
tia1
84
LLPS-Dar-1200
ENSDARG00000009525.7
E9QJJ0
tial1
85
LLPS-Dar-0234
ENSDARG00000035390.7
F1RDR1
tnpo1
86
LLPS-Dar-1154
ENSDARG00000074161.5
U3JAU2
tnrc6b
87
LLPS-Dar-2314
ENSDARG00000115148.1
P79734
tp53
88
LLPS-Dar-1690
ENSDARG00000001889.8
Q6NWK7
tuba1a
89
LLPS-Dar-0685
ENSDARG00000003087.4
Q1LYI0
ubxn6
90
LLPS-Dar-4048
ENSDARG00000098902.2
A0A0R4IIQ1
ubxn8
91
LLPS-Dar-3223
ENSDARG00000014113.11
F1QNY1
wasla
92
LLPS-Dar-0250
ENSDARG00000063229.8
A0A2R8RNP8
xpo1b
93
LLPS-Dar-4209
ENSDARG00000011837.9
Q6TLH8
zgc:100846
94
LLPS-Dar-2643
ENSDARG00000110098.1
Q6P0T6
znf207b