Ciona intestinalis      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 57 genes.  Reviewed (0 or Unreviewed (57

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cii-0052
ENSCING00000008855.3
F6R3K6
2
LLPS-Cii-0147
ENSCING00000007598.4
F6ZJZ6
3
LLPS-Cii-0177
ENSCING00000003627.3
F6TJJ7
4
LLPS-Cii-0184
ENSCING00000004639.3
F6RMU1
5
LLPS-Cii-0201
ENSCING00000023586.1
H2XWR8
6
LLPS-Cii-0216
ENSCING00000008480.3
F6T3V6
7
LLPS-Cii-0258
ENSCING00000004140.3
F6UI47
8
LLPS-Cii-0267
ENSCING00000007772.3
F6XT42
9
LLPS-Cii-0273
ENSCING00000022142.1
H2XPH6
10
LLPS-Cii-0303
ENSCING00000002150.3
F6W4G9
11
LLPS-Cii-0312
ENSCING00000001412.3
F6YS67
12
LLPS-Cii-0417
ENSCING00000007947.3
F6Z8I7
13
LLPS-Cii-0483
ENSCING00000020168.1
H2Y1J7
14
LLPS-Cii-0553
ENSCING00000004535.3
F7A8L8
15
LLPS-Cii-0624
ENSCING00000000557.3
F6Q753
16
LLPS-Cii-0655
ENSCING00000021005.1
H2XVD0
17
LLPS-Cii-0689
ENSCING00000007265.3
F6THX7
18
LLPS-Cii-0711
ENSCING00000007421.3
F7B898
19
LLPS-Cii-0720
ENSCING00000001460.3
F6VK85
20
LLPS-Cii-0732
ENSCING00000001326.3
F6W9U8
21
LLPS-Cii-0738
ENSCING00000007816.3
F6XC92
22
LLPS-Cii-0787
ENSCING00000014281.2
F6WP26
23
LLPS-Cii-0843
ENSCING00000018289.1
H2XVQ2
24
LLPS-Cii-0857
ENSCING00000008100.3
F6UHM2
25
LLPS-Cii-1011
ENSCING00000003362.3
F7BA12
26
LLPS-Cii-1032
ENSCING00000007884.3
F6SUC2
27
LLPS-Cii-1189
ENSCING00000021761.1
H2Y1V2
28
LLPS-Cii-1195
ENSCING00000017649.2
F6Z541
29
LLPS-Cii-1204
ENSCING00000007480.3
F6UJL1
30
LLPS-Cii-1231
ENSCING00000024899.1
H2XSQ5
31
LLPS-Cii-1232
ENSCING00000007500.3
F6X7X8
32
LLPS-Cii-1296
ENSCING00000006539.3
F6RNR5
33
LLPS-Cii-1318
ENSCING00000000139.3
F7A0P0
34
LLPS-Cii-1364
ENSCING00000002817.3
F6WZA5
35
LLPS-Cii-1851
ENSCING00000017374.2
F7B1Z2
36
LLPS-Cii-0432
ENSCING00000000050.3
Q4H2Q6
Ci-Tardbp
37
LLPS-Cii-1646
ENSCING00000006246.3
Q4H2I7
Ci-ZF(C2H2)-28
38
LLPS-Cii-2173
ENSCING00000010522.3
F6S2C6
LOC100176316
39
LLPS-Cii-0978
ENSCING00000018936.1
H2XYF5
LOC100178444
40
LLPS-Cii-0778
ENSCING00000003848.3
A0A1W2WEA2
LOC100181027
41
LLPS-Cii-1559
ENSCING00000005744.3
F6Q021
LOC100181113
42
LLPS-Cii-2238
ENSCING00000019169.1
H2XVM0
LOC100181195
43
LLPS-Cii-0745
ENSCING00000008843.3
F6R4H2
LOC100181821
44
LLPS-Cii-2332
ENSCING00000016031.2
F6Q4H4
LOC100182493
45
LLPS-Cii-1190
ENSCING00000002325.4
F7AZI8
LOC100182642
46
LLPS-Cii-1592
ENSCING00000008979.3
F6PKL1
LOC100182844
47
LLPS-Cii-0270
ENSCING00000010696.3
F6VVR6
LOC100183745
48
LLPS-Cii-0283
ENSCING00000024562.1
A0A1W3JKJ9
LOC100184417
49
LLPS-Cii-1968
ENSCING00000007519.3
F6YF45
LOC100184512
50
LLPS-Cii-1783
ENSCING00000005773.3
F6RSW6
LOC100184540
51
LLPS-Cii-0028
ENSCING00000003124.3
F6RCR9
LOC100184788
52
LLPS-Cii-0592
ENSCING00000001070.3
F7B0Q2
LOC100185176
53
LLPS-Cii-0412
ENSCING00000005048.3
F7A5J2
LOC100186181
54
LLPS-Cii-0259
ENSCING00000024750.1
H2XTR2
LOC100186306
55
LLPS-Cii-0486
ENSCING00000008370.3
F7A172
LOC100186763
56
LLPS-Cii-0209
ENSCING00000001513.3
F7ATI9
LOC100186956
57
LLPS-Cii-1104
ENSCING00000009766.3
F6ZT40
zf(rbz)-2