Arabidopsis lyrata      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 38 genes.  Reviewed (0 or Unreviewed (38

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Arl-2585
fgenesh1_pg.C_scaffold_3002996
D7L6X8
ARALYDRAFT_343233
2
LLPS-Arl-1858
fgenesh1_pg.C_scaffold_8002097
D7MUG8
ARALYDRAFT_358310
3
LLPS-Arl-0539
fgenesh2_kg.1__852__AT1G08370.1
D7KI17
ARALYDRAFT_470898
4
LLPS-Arl-2817
fgenesh2_kg.1__1976__AT1G18070.1
D7KGA5
ARALYDRAFT_472022
5
LLPS-Arl-1264
fgenesh2_kg.1__3297__AT1G30970.1
D7KGH7
ARALYDRAFT_473343
6
LLPS-Arl-0670
fgenesh2_kg.1__4373__AT1G52980.1
D7KKC6
ARALYDRAFT_474419
7
LLPS-Arl-0720
fgenesh2_kg.2__935__AT1G67090.1
D7KUZ2
ARALYDRAFT_475805
8
LLPS-Arl-0724
fgenesh2_kg.3__346__AT3G03920.1
D7L1Z5
ARALYDRAFT_477645
9
LLPS-Arl-2463
fgenesh2_kg.3__820__AT3G07810.2
D7L718
ARALYDRAFT_478119
10
LLPS-Arl-1338
fgenesh2_kg.3__2116__AT3G18990.1
D7L967
ARALYDRAFT_479415
11
LLPS-Arl-1040
fgenesh2_kg.3__2342__AT3G21215.1
D7L0Q3
ARALYDRAFT_479641
12
LLPS-Arl-0658
fgenesh2_kg.4__502__AT2G25880.1
D7LC06
ARALYDRAFT_481442
13
LLPS-Arl-1726
fgenesh2_kg.4__2690__AT2G45000.1
D7LBU6
ARALYDRAFT_483630
14
LLPS-Arl-0914
fgenesh2_kg.5__72__AT2G01650.1
D7LLU4
ARALYDRAFT_484080
15
LLPS-Arl-1065
fgenesh2_kg.5__675__AT3G29160.2
D7LNU4
ARALYDRAFT_484683
16
LLPS-Arl-1713
fgenesh2_kg.5__1941__AT3G55280.1
D7LV29
ARALYDRAFT_485949
17
LLPS-Arl-0061
fgenesh2_kg.6__1310__AT5G13570.1
D7M5U3
ARALYDRAFT_488176
18
LLPS-Arl-1452
fgenesh2_kg.6__2011__AT5G19820.1
D7LZC0
ARALYDRAFT_488877
19
LLPS-Arl-2296
fgenesh2_kg.6__3638__AT4G00660.2
D7M5L6
ARALYDRAFT_490504
20
LLPS-Arl-0762
fgenesh2_kg.7__493__AT4G35800.1
D7MC36
ARALYDRAFT_491060
21
LLPS-Arl-1292
fgenesh2_kg.8__1133__AT5G52470.1
D7MS52
ARALYDRAFT_495317
22
LLPS-Arl-0672
fgenesh2_kg.8__1236__AT5G53480.1
D7MSY7
ARALYDRAFT_495420
23
LLPS-Arl-0809
fgenesh2_kg.8__1782__AT5G58470.2
D7MQE0
ARALYDRAFT_495966
24
LLPS-Arl-1016
fgenesh2_kg.8__2341__AT5G63400.1
D7MP07
ARALYDRAFT_496525
25
LLPS-Arl-2562
Al_scaffold_0006_1678
D7LX33
ARALYDRAFT_661613
26
LLPS-Arl-0244
Al_scaffold_0002_1857
D7KYY3
ARALYDRAFT_676707
27
LLPS-Arl-1124
scaffold_101937.1
D7KFE8
ARALYDRAFT_889143
28
LLPS-Arl-1649
scaffold_202994.1
D7KX31
ARALYDRAFT_895920
29
LLPS-Arl-0881
scaffold_301629.1
D7L2B3
ARALYDRAFT_897659
30
LLPS-Arl-0535
scaffold_303734.1
D7L4D0
ARALYDRAFT_899764
31
LLPS-Arl-0149
scaffold_303989.1
D7L890
ARALYDRAFT_900019
32
LLPS-Arl-1032
scaffold_503249.1
D7LRN0
ARALYDRAFT_907545
33
LLPS-Arl-0378
scaffold_601746.1
D7LWW2
ARALYDRAFT_909689
34
LLPS-Arl-0431
scaffold_704070.1
D7MJI8
ARALYDRAFT_916328
35
LLPS-Arl-1133
scaffold_803064.1
D7MPR7
ARALYDRAFT_919664
36
LLPS-Arl-1749
scaffold_803533.1
D7MNH0
ARALYDRAFT_920133
37
LLPS-Arl-1916
fgenesh2_kg.1__1975__AT1G18040.1
D7KGA1
AT_CDCKD_3
38
LLPS-Arl-0189
fgenesh1_pm.C_scaffold_6002153
D7M5I4
LSM4