Amborella trichopoda      Droplet


※ Droplet introduction

    Interactions between diverse synthetic, multivalent macromolecules (including multi-domain proteins and RNA) produce sharp liquid-liquid-demixing phase separations, generating micrometre-sized liquid droplets in aqueous solution (1-2). In vitro phase separation assays with purified proteins have become the standard way to investigate proteins that form membrane-less compartments. By now, various proteins have been purified and tested for their ability to phase separate and form liquid condensates in vitro (3).

References
1. Li P., Banjade S., Cheng H.C., et al. (2012) Phase transitions in the assembly of multivalent signalling proteins. Nature, 483, 336-40. PMID: 22398450
2. Kato M., Han T.W., Xie S., et al. (2012) Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels. Cell, 149, 753-67. PMID: 22579281
3. Alberti S., Saha S., Woodruff J.B., et al. (2018) A User’s Guide for Phase Separation Assays with Purified Proteins. J. Mol. Biol., 430, 4806-4820. PMID: 29944854


There are 38 genes.  Reviewed (0 or Unreviewed (38

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Amt-0034
AMTR_s00001p00069970
W1NKZ6
AMTR_s00001p00069970
2
LLPS-Amt-0741
AMTR_s00001p00152770
W1NM08
AMTR_s00001p00152770
3
LLPS-Amt-0469
AMTR_s00001p00229100
W1NLG0
AMTR_s00001p00229100
4
LLPS-Amt-0844
AMTR_s00002p00140630
W1NTW2
AMTR_s00002p00140630
5
LLPS-Amt-1132
AMTR_s00002p00180430
W1P295
AMTR_s00002p00180430
6
LLPS-Amt-0555
AMTR_s00004p00060080
W1NDT6
AMTR_s00004p00060080
7
LLPS-Amt-1607
AMTR_s00005p00237510
W1PAC8
AMTR_s00005p00237510
8
LLPS-Amt-0701
AMTR_s00007p00226740
W1PED4
AMTR_s00007p00226740
9
LLPS-Amt-1353
AMTR_s00007p00269220
W1P6S7
AMTR_s00007p00269220
10
LLPS-Amt-1537
AMTR_s00009p00218020
W1NHJ5
AMTR_s00009p00218020
11
LLPS-Amt-0287
AMTR_s00009p00258110
W1NH37
AMTR_s00009p00258110
12
LLPS-Amt-0505
AMTR_s00009p00265680
W1NI91
AMTR_s00009p00265680
13
LLPS-Amt-1949
AMTR_s00010p00254750
W1NFZ1
AMTR_s00010p00254750
14
LLPS-Amt-1395
AMTR_s00011p00256770
W1NG44
AMTR_s00011p00256770
15
LLPS-Amt-1525
AMTR_s00012p00215820
W1PJM5
AMTR_s00012p00215820
16
LLPS-Amt-0081
AMTR_s00012p00258090
W1PDK4
AMTR_s00012p00258090
17
LLPS-Amt-0065
AMTR_s00019p00188800
W1PJH4
AMTR_s00019p00188800
18
LLPS-Amt-0827
AMTR_s00025p00204100
W1PWK1
AMTR_s00025p00204100
19
LLPS-Amt-1184
AMTR_s00040p00213340
W1PYW3
AMTR_s00040p00213340
20
LLPS-Amt-0105
AMTR_s00045p00157300
W1P2F0
AMTR_s00045p00157300
21
LLPS-Amt-0561
AMTR_s00045p00192570
W1P3H3
AMTR_s00045p00192570
22
LLPS-Amt-1256
AMTR_s00049p00211440
W1PZJ0
AMTR_s00049p00211440
23
LLPS-Amt-0654
AMTR_s00051p00026490
U5D311
AMTR_s00051p00026490
24
LLPS-Amt-1339
AMTR_s00051p00037850
U5D2G8
AMTR_s00051p00037850
25
LLPS-Amt-1788
AMTR_s00054p00039660
U5D6Q1
AMTR_s00054p00039660
26
LLPS-Amt-0593
AMTR_s00056p00185680
U5CPW7
AMTR_s00056p00185680
27
LLPS-Amt-1558
AMTR_s00057p00039750
U5D2U5
AMTR_s00057p00039750
28
LLPS-Amt-1152
AMTR_s00058p00157820
W1PF60
AMTR_s00058p00157820
29
LLPS-Amt-0188
AMTR_s00060p00199420
W1NL49
AMTR_s00060p00199420
30
LLPS-Amt-1478
AMTR_s00062p00152740
U5D205
AMTR_s00062p00152740
31
LLPS-Amt-0710
AMTR_s00066p00162800
U5DCK1
AMTR_s00066p00162800
32
LLPS-Amt-1057
AMTR_s00068p00103300
U5DIL3
AMTR_s00068p00103300
33
LLPS-Amt-1138
AMTR_s00114p00117470
W1NPV7
AMTR_s00114p00117470
34
LLPS-Amt-1828
AMTR_s00137p00107730
W1NFJ0
AMTR_s00137p00107730
35
LLPS-Amt-1409
AMTR_s00148p00018960
W1PK06
AMTR_s00148p00018960
36
LLPS-Amt-0351
AMTR_s00148p00031480
W1PEI1
AMTR_s00148p00031480
37
LLPS-Amt-0957
AMTR_s00171p00048400
W1PR98
AMTR_s00171p00048400
38
LLPS-Amt-0303
AMTR_s00045p00214370
W1P3L4
LSM4