Takifugu rubripes      Cajal body


※ Cajal body introduction

    Cajal bodies is a kind of non-membrane-bound nuclear bodies, formation of such sub-organelles usually involves dynamic processes, which can move within the nucleoplasm except when transiently immobilized through interaction with chromatin (1). The Cajal body has been suggested to be associated with telomere maintenance and maturation of the splicing machinery and processing of histone mRNA (2;3), it is rich in ribonucleoprotein (RNP) complexes and characterized by the marker protein coilin that interacts with many factors and thereby serves as a platform for the assembly of Cajal bodies (1). WRAP53β has been demonstrated to be an essential Cajal Body Component, it guides SMN across the cell to Cajal Bodies, and phosphorylation of WRAP53β by ATM promotes its involvement in the DNA damage response (4). besides, Fam118 is a newly identified component of Cajal bodies that is required for Cajal body formation (5). Defects in Cajal body formation are linked to impaired cell proliferation and splicing (6). In fact, Cajal bodies are not essential in telomerase function and telomere elongation ,whereas certain Cajal body factors such as WRAP53β clearly play important roles in telomere homeostasis (1).

References
1. Henriksson, S., & Farnebo, M. (2015) On the road with WRAP53beta: guardian of Cajal bodies and genome integrity. Front Genet, 6, 91. PMID: 25852739
2. Machyna, M., Heyn, P., & Neugebauer, K. M. (2013) Cajal bodies: where form meets function. Wiley Interdiscip Rev RNA, 4(1), 17-34. PMID: 23042601
3. Hutten, S., Chachami, G., Winter, U., Melchior, F., & Lamond, A. I. (2014) A role for the Cajal-body-associated SUMO isopeptidase USPL1 in snRNA transcription mediated by RNA polymerase II. J. Cell. Sci., 127(Pt 5), 1065-1078. PMID: 24413172
4. Coucoravas, C., Dhanjal, S., Henriksson, S., Bohm, S., & Farnebo, M. (2017) Phosphorylation of the Cajal body protein WRAP53beta by ATM promotes its involvement in the DNA damage response. RNA Biol., 14(6), 804-813. PMID: 27715493
5. Li, Y., Fong, K. W., Tang, M., Han, X., Gong, Z., Ma, W, Chen, J. (2014) Fam118B, a newly identified component of Cajal bodies, is required for Cajal body formation, snRNP biogenesis and cell viability. J. Cell Sci., 127(Pt 9), 2029-2039. PMID:24569877
6. Lemm, I., Girard, C., Kuhn, A. N., Watkins, N. J., Schneider, M., Bordonne, R., & Luhrmann, R. (2006) Ongoing U snRNP biogenesis is required for the integrity of Cajal bodies. Mol. Biol. Cell, 17(7), 3221-3231. PMID:16687569


There are 42 genes.  Reviewed (0 or Unreviewed (42

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Tar-0720
ENSTRUG00000017325.2
H2V599
2
LLPS-Tar-3135
ENSTRUG00000021308.1
A0A3B5KN99
3
LLPS-Tar-3339
ENSTRUG00000019952.1
A0A3B5KNS3
4
LLPS-Tar-0832
ENSTRUG00000003059.2
H2S418
cdk1
5
LLPS-Tar-3261
ENSTRUG00000010187.2
A0A3B5K9X3
cirbp
6
LLPS-Tar-1363
ENSTRUG00000005067.2
H2SIC7
crebbp
7
LLPS-Tar-2663
ENSTRUG00000023712.1
A0A3B5K2Q9
ddx20
8
LLPS-Tar-2882
ENSTRUG00000006706.2
H2SVP1
fam118b
9
LLPS-Tar-1433
ENSTRUG00000002671.2
H2S1F7
fam192a
10
LLPS-Tar-0017
ENSTRUG00000004408.2
A0A3B5KQ98
fbl
11
LLPS-Tar-0233
ENSTRUG00000021514.1
A0A3B5KD82
LOC101062751
12
LLPS-Tar-3023
ENSTRUG00000010045.2
H2TKR9
LOC101062801
13
LLPS-Tar-1183
ENSTRUG00000006586.2
H2SUT9
LOC101065968
14
LLPS-Tar-0445
ENSTRUG00000025934.1
A0A3B5KAI4
LOC101067277
15
LLPS-Tar-1264
ENSTRUG00000005571.2
A0A3B5KIP3
LOC101073809
16
LLPS-Tar-1683
ENSTRUG00000021863.1
H2S5K6
LOC101080055
17
LLPS-Tar-1068
ENSTRUG00000015355.2
H2UQL9
nop56
18
LLPS-Tar-0284
ENSTRUG00000005053.2
H2SI87
nop58
19
LLPS-Tar-2878
ENSTRUG00000023256.1
A0A3B5KBM8
NPAT
20
LLPS-Tar-0747
ENSTRUG00000000709.2
H2RNJ3
patl1
21
LLPS-Tar-2652
ENSTRUG00000002210.2
H2RY50
polr1a
22
LLPS-Tar-0511
ENSTRUG00000006170.2
H2SRH5
psme3
23
LLPS-Tar-0399
ENSTRUG00000010451.2
H2TNQ1
ruvbl1
24
LLPS-Tar-0411
ENSTRUG00000005100.2
H2SIJ9
ruvbl2
25
LLPS-Tar-2128
ENSTRUG00000014173.2
H2UH25
sart3
26
LLPS-Tar-1685
ENSTRUG00000016874.2
H2V213
slc39a1
27
LLPS-Tar-2310
ENSTRUG00000000736.2
H2RNQ5
smn
28
LLPS-Tar-1957
ENSTRUG00000000065.2
H2RJ37
snrpa1
29
LLPS-Tar-1402
ENSTRUG00000009060.2
H2TDM7
snrpb2
30
LLPS-Tar-2365
ENSTRUG00000008977.2
H2TD27
snrpd1
31
LLPS-Tar-1588
ENSTRUG00000004040.2
H2SB02
snrpg
32
LLPS-Tar-3200
ENSTRUG00000008272.2
H2T7P6
spopl
33
LLPS-Tar-1392
ENSTRUG00000019611.1
A0A3B5KAP8
sumo1
34
LLPS-Tar-0125
ENSTRUG00000012070.2
A0A3B5K5V3
tardbp
35
LLPS-Tar-0447
ENSTRUG00000014198.2
H2UH84
tert
36
LLPS-Tar-0552
ENSTRUG00000025603.1
A0A3B5KKT7
toe1
37
LLPS-Tar-0636
ENSTRUG00000016692.2
H2V0H7
ubtf
38
LLPS-Tar-1228
ENSTRUG00000007835.2
A0A3B5KKX4
vrk1
39
LLPS-Tar-3228
ENSTRUG00000004309.2
H2SCT1
wrap53
40
LLPS-Tar-2337
ENSTRUG00000024170.1
A0A3B5K6C0
ybx1
41
LLPS-Tar-0560
ENSTRUG00000010488.2
H2TP48
zgpat
42
LLPS-Tar-1428
ENSTRUG00000014570.2
H2UJX1
znf277