LLPS-Scp-1036
dbp3
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | ATP-dependent RNA helicase dbp3 |
| Gene Name: | dbp3, SPBC17D1.06 |
| Ensembl Gene: | SPBC17D1.06 |
| Ensembl Protein: | SPBC17D1.06.1 |
| Organism: | Schizosaccharomyces pombe |
| Taxa ID: | 284812 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus, Stress granule, Others | Predicted from orthologs | (View) |
▼ FUNCTION
| ATP-dependent RNA helicase required for 60S ribosomal subunit synthesis. Involved in efficient pre-rRNA processing, predominantly at site A3, which is necessary for the normal formation of 25S and 5.8S rRNAs (By similarity). |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | SPBC17D1.06.1 | SPBC17D1.06.1 |
| UniProt | Q10202, DBP3_SCHPO | |
| GeneBank | CU329671 | CAA20430.1 |
| RefSeq | NM_001022309.2 | NP_596388.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MQFCFRILIL YISLSIDNNY LVTTLISLKE NVFLHIFTLT FLFKAFLLKM AKRSVEELKR 60 61 SADEEASVKR KEKKSKHEHK KHKKDKPSAD KDRISKKDKK KSKKGKSKTK EESIEINAEE 120 121 GAKIAQPAIG SANASNHNDE EAYDRYIKKH NISFADPKSS ENLLPILQFD ELDVSAKLRE 180 181 GLKNYKEPTP IQAATWPYLL AGRDVVGIAE TGSGKTVAFG IPALQYLNGL SDNKSVPRVL 240 241 VVSPTRELAI QTYENLNSLI QGTNLKAVVV YGGAPKSEQA RAAKNASVII GTPGRLLDLI 300 301 NDGSIDCSQV GYLVLDEADR MLDTGFEQDI RNIISHTPDP TRNGSRQTVF FSATWPESVR 360 361 ALAATFLKDP VKITIGSDEL AASQNITQIV EILDDPRSKE RMLDNLLRKH LSSGGKDDKI 420 421 LIFVLYKKEA ARVEGTLARK YNVVGIHGDM SQGARLQALN DFKSGKCPVL VATDVAARGL 480 481 DIPKVQLVIN VTFPLTIEDY VHRIGRTGRA NTKGTAITFF TPQDKSHAGE LVNVLRQAKQ 540 541 DIPEGLFKFG TAVKPKLNAY GSRVVDVPVK AATKIVFD 578 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGCAATTTT GTTTTAGGAT TTTAATATTG TATATATCGT TAAGCATAGA TAACAATTAC 60 61 TTGGTTACTA CGTTAATATC TCTGAAGGAA AATGTTTTTT TGCATATTTT TACTCTAACC 120 121 TTTCTCTTCA AAGCTTTCCT TTTAAAAATG GCGAAACGAT CAGTGGAAGA GTTAAAAAGA 180 181 TCGGCGGATG AAGAAGCTTC TGTTAAGCGA AAGGAGAAGA AATCAAAGCA TGAGCATAAG 240 241 AAGCATAAAA AAGATAAGCC CTCTGCCGAC AAGGATAGAA TTTCAAAAAA GGATAAAAAG 300 301 AAATCAAAGA AAGGAAAATC AAAAACTAAA GAAGAATCGA TAGAAATCAA TGCGGAAGAG 360 361 GGAGCAAAAA TCGCACAACC CGCGATCGGC TCAGCTAACG CTTCTAATCA TAATGATGAA 420 421 GAAGCGTATG ACCGTTACAT TAAGAAGCAT AATATTTCTT TTGCGGATCC TAAATCCTCT 480 481 GAAAATTTAC TTCCAATTCT TCAGTTCGAT GAACTAGACG TTTCAGCTAA GTTACGCGAG 540 541 GGTTTAAAGA ATTATAAGGA ACCTACGCCT ATTCAAGCTG CTACTTGGCC TTATTTACTA 600 601 GCTGGGAGAG ACGTGGTAGG AATTGCTGAA ACCGGTTCTG GTAAGACTGT TGCATTCGGA 660 661 ATTCCTGCTT TGCAATACCT CAATGGTTTG TCAGATAACA AGTCTGTCCC TCGTGTTTTG 720 721 GTAGTTAGTC CTACTCGAGA ATTAGCCATT CAAACGTATG AAAACCTCAA TAGTCTTATT 780 781 CAAGGTACCA ACTTAAAAGC TGTGGTTGTT TATGGCGGCG CCCCTAAATC GGAGCAAGCG 840 841 AGGGCTGCCA AGAACGCCAG TGTCATTATT GGTACCCCTG GTCGTTTGTT GGATCTGATT 900 901 AACGATGGCT CGATTGATTG TTCTCAAGTT GGTTACCTTG TTTTAGATGA GGCAGATCGT 960 961 ATGCTTGACA CTGGATTCGA ACAAGATATC CGTAACATCA TCAGCCATAC CCCAGATCCC 1020 1021 ACTCGTAATG GATCCAGACA AACTGTCTTT TTCAGTGCTA CTTGGCCTGA ATCCGTTCGC 1080 1081 GCTCTTGCTG CTACCTTTTT AAAGGATCCC GTTAAAATCA CTATTGGAAG TGATGAACTA 1140 1141 GCTGCTTCCC AAAATATCAC ACAGATTGTT GAAATTCTGG ATGACCCAAG AAGCAAGGAG 1200 1201 AGAATGCTTG ATAATCTTCT CAGAAAGCAT CTTTCTTCTG GAGGGAAAGA CGATAAAATC 1260 1261 CTCATATTTG TTTTGTACAA AAAAGAAGCA GCTAGAGTTG AAGGTACCTT GGCTAGGAAA 1320 1321 TATAACGTGG TGGGCATTCA TGGTGATATG TCCCAGGGAG CCCGATTACA AGCATTAAAT 1380 1381 GACTTTAAGT CTGGAAAATG TCCCGTACTA GTAGCAACTG ACGTTGCCGC CCGAGGTTTG 1440 1441 GACATTCCTA AAGTGCAACT TGTGATTAAT GTTACTTTCC CCTTGACTAT AGAAGATTAT 1500 1501 GTTCATAGAA TCGGACGTAC TGGCCGTGCC AACACAAAAG GTACTGCTAT TACATTTTTC 1560 1561 ACTCCACAAG ACAAGTCACA TGCTGGTGAG CTTGTTAATG TTCTTCGTCA AGCCAAACAA 1620 1621 GATATTCCTG AAGGACTATT CAAGTTTGGA ACAGCTGTCA AGCCCAAACT TAATGCTTAC 1680 1681 GGAAGTCGTG TAGTCGACGT TCCTGTAAAG GCTGCTACTA AGATTGTTTT TGACTAA 1737 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Nucleolus | |
Molecular Function | ATP binding | |
Molecular Function | ATP-dependent RNA helicase activity | |
Molecular Function | RNA binding | |
Biological Process | RRNA processing |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Scc-1465 | Schizosaccharomyces cryophilus | 78.23 | 0.0 | 718 |
| LLPS-Scj-0255 | Schizosaccharomyces japonicus | 75.17 | 0.0 | 692 |
| LLPS-Sac-0099 | Saccharomyces cerevisiae | 56.04 | 3e-157 | 468 |
| LLPS-Yal-0876 | Yarrowia lipolytica | 55.58 | 1e-152 | 456 |
| LLPS-Lem-0653 | Leptosphaeria maculans | 54.4 | 7e-153 | 459 |
| LLPS-Pyt-0181 | Pyrenophora teres | 54.4 | 5e-151 | 454 |
| LLPS-Zyt-0043 | Zymoseptoria tritici | 54.07 | 8e-153 | 458 |
| LLPS-Asg-0130 | Ashbya gossypii | 53.62 | 1e-150 | 451 |
| LLPS-Trr-1098 | Trichoderma reesei | 53.54 | 5e-146 | 439 |
| LLPS-Sem-0326 | Selaginella moellendorffii | 53.45 | 2e-133 | 402 |
| LLPS-Dos-0796 | Dothistroma septosporum | 53.39 | 2e-147 | 445 |
| LLPS-Nef-1479 | Neosartorya fischeri | 53.26 | 3e-151 | 452 |
| LLPS-Fuo-0598 | Fusarium oxysporum | 53.1 | 1e-149 | 451 |
| LLPS-Beb-0691 | Beauveria bassiana | 53.1 | 1e-142 | 433 |
| LLPS-Asfu-0716 | Aspergillus fumigatus | 53.03 | 5e-152 | 454 |
| LLPS-Kop-0593 | Komagataella pastoris | 52.81 | 1e-148 | 445 |
| LLPS-Trv-0361 | Trichoderma virens | 52.65 | 2e-146 | 439 |
| LLPS-Asc-0407 | Aspergillus clavatus | 52.58 | 1e-148 | 445 |
| LLPS-Pytr-1302 | Pyrenophora triticirepentis | 52.52 | 2e-153 | 461 |
| LLPS-Mel-0268 | Melampsora laricipopulina | 52.32 | 2e-142 | 429 |
| LLPS-Blg-0024 | Blumeria graminis | 52.24 | 8e-158 | 473 |
| LLPS-Cogr-1362 | Colletotrichum graminicola | 52.11 | 1e-142 | 433 |
| LLPS-Phn-1262 | Phaeosphaeria nodorum | 52.1 | 3e-152 | 457 |
| LLPS-Cog-0756 | Colletotrichum gloeosporioides | 52.01 | 4e-141 | 429 |
| LLPS-Fus-0706 | Fusarium solani | 51.99 | 2e-148 | 447 |
| LLPS-Abg-0547 | Absidia glauca | 51.79 | 3e-142 | 429 |
| LLPS-Ast-1013 | Aspergillus terreus | 51.79 | 3e-139 | 421 |
| LLPS-Php-0137 | Physcomitrella patens | 51.6 | 4e-122 | 379 |
| LLPS-Fuv-0419 | Fusarium verticillioides | 51.55 | 1e-139 | 424 |
| LLPS-Orbr-0950 | Oryza brachyantha | 51.48 | 3e-126 | 386 |
| LLPS-Hea-0692 | Helianthus annuus | 51.39 | 3e-126 | 389 |
| LLPS-Bro-2852 | Brassica oleracea | 51.3 | 2e-128 | 394 |
| LLPS-Ved-0558 | Verticillium dahliae | 51.27 | 3e-148 | 447 |
| LLPS-Spr-0125 | Sporisorium reilianum | 51.21 | 9e-135 | 412 |
| LLPS-Put-0729 | Puccinia triticina | 51.12 | 1e-139 | 428 |
| LLPS-Usm-0468 | Ustilago maydis | 50.99 | 5e-136 | 415 |
| LLPS-Coo-0606 | Colletotrichum orbiculare | 50.95 | 8e-141 | 428 |
| LLPS-Osl-0952 | Ostreococcus lucimarinus | 50.94 | 4e-133 | 403 |
| LLPS-Asni-0533 | Aspergillus niger | 50.79 | 1e-141 | 427 |
| LLPS-Asf-0935 | Aspergillus flavus | 50.75 | 2e-143 | 431 |
| LLPS-Aso-1471 | Aspergillus oryzae | 50.75 | 2e-143 | 431 |
| LLPS-Asn-0589 | Aspergillus nidulans | 50.75 | 2e-119 | 366 |
| LLPS-Gag-0006 | Gaeumannomyces graminis | 50.75 | 5e-136 | 418 |
| LLPS-Amt-1783 | Amborella trichopoda | 50.71 | 1e-130 | 402 |
| LLPS-Viv-1627 | Vitis vinifera | 50.71 | 8e-127 | 393 |
| LLPS-Phv-1456 | Phaseolus vulgaris | 50.61 | 1e-124 | 384 |
| LLPS-Nia-1219 | Nicotiana attenuata | 50.61 | 1e-125 | 387 |
| LLPS-Sei-1138 | Setaria italica | 50.59 | 2e-132 | 404 |
| LLPS-Prp-2436 | Prunus persica | 50.48 | 4e-129 | 396 |
| LLPS-Chr-1454 | Chlamydomonas reinhardtii | 50.47 | 7e-134 | 411 |
| LLPS-Brr-2518 | Brassica rapa | 50.46 | 1e-126 | 390 |
| LLPS-Art-0845 | Arabidopsis thaliana | 50.24 | 2e-127 | 391 |
| LLPS-Arl-0106 | Arabidopsis lyrata | 50.12 | 5e-128 | 393 |
| LLPS-Org-1426 | Oryza glaberrima | 50.12 | 3e-128 | 393 |
| LLPS-Ors-1501 | Oryza sativa | 50.12 | 3e-128 | 393 |
| LLPS-Nec-0844 | Neurospora crassa | 50.0 | 1e-137 | 421 |
| LLPS-Dac-0679 | Daucus carota | 50.0 | 8e-129 | 396 |
| LLPS-Mua-1218 | Musa acuminata | 49.88 | 6e-128 | 394 |
| LLPS-Ori-0890 | Oryza indica | 49.88 | 2e-127 | 391 |
| LLPS-Thc-1521 | Theobroma cacao | 49.77 | 3e-126 | 389 |
| LLPS-Gor-0172 | Gossypium raimondii | 49.76 | 5e-129 | 397 |
| LLPS-Pug-0509 | Puccinia graminis | 49.57 | 3e-139 | 428 |
| LLPS-Via-0259 | Vigna angularis | 49.41 | 2e-125 | 387 |
| LLPS-Crn-1335 | Cryptococcus neoformans | 49.37 | 2e-140 | 427 |
| LLPS-Hov-1630 | Hordeum vulgare | 49.31 | 2e-128 | 394 |
| LLPS-Tra-1079 | Triticum aestivum | 49.31 | 1e-128 | 394 |
| LLPS-Lep-0229 | Leersia perrieri | 49.31 | 7e-126 | 387 |
| LLPS-Sot-0324 | Solanum tuberosum | 49.28 | 1e-124 | 385 |
| LLPS-Sol-1293 | Solanum lycopersicum | 49.28 | 1e-126 | 387 |
| LLPS-Miv-0431 | Microbotryum violaceum | 49.26 | 3e-137 | 420 |
| LLPS-Brn-1856 | Brassica napus | 49.1 | 8e-125 | 385 |
| LLPS-Sob-1632 | Sorghum bicolor | 49.07 | 5e-128 | 392 |
| LLPS-Brd-1085 | Brachypodium distachyon | 48.85 | 2e-127 | 391 |
| LLPS-Vir-1176 | Vigna radiata | 48.85 | 2e-126 | 386 |
| LLPS-Coc-1671 | Corchorus capsularis | 48.82 | 4e-124 | 384 |
| LLPS-Cus-1772 | Cucumis sativus | 48.24 | 9e-118 | 367 |
| LLPS-Pot-0244 | Populus trichocarpa | 47.86 | 1e-123 | 382 |
| LLPS-Met-0376 | Medicago truncatula | 47.79 | 2e-125 | 386 |
| LLPS-Glm-1010 | Glycine max | 47.71 | 1e-124 | 384 |
| LLPS-Orgl-1319 | Oryza glumaepatula | 47.63 | 4e-117 | 363 |
| LLPS-Orb-1319 | Oryza barthii | 47.63 | 2e-116 | 362 |
| LLPS-Mae-1415 | Manihot esculenta | 47.53 | 3e-122 | 378 |
| LLPS-Orr-0317 | Oryza rufipogon | 47.28 | 7e-116 | 360 |
| LLPS-Orni-0041 | Oryza nivara | 47.16 | 3e-115 | 358 |
| LLPS-Zem-0283 | Zea mays | 46.75 | 2e-128 | 393 |
| LLPS-Orp-2172 | Oryza punctata | 46.58 | 3e-96 | 310 |
| LLPS-Tru-1592 | Triticum urartu | 46.45 | 5e-96 | 320 |
| LLPS-Tar-1129 | Takifugu rubripes | 45.45 | 1e-98 | 320 |
| LLPS-Map-0030 | Magnaporthe poae | 45.45 | 3e-100 | 322 |
| LLPS-Pof-0560 | Poecilia formosa | 45.41 | 2e-98 | 319 |
| LLPS-Scs-0309 | Sclerotinia sclerotiorum | 45.39 | 4e-103 | 330 |
| LLPS-Gaa-3087 | Gasterosteus aculeatus | 45.38 | 2e-97 | 317 |
| LLPS-Orn-2634 | Oreochromis niloticus | 45.15 | 1e-98 | 320 |
| LLPS-Xim-0594 | Xiphophorus maculatus | 44.87 | 5e-97 | 315 |
| LLPS-Scf-0561 | Scleropages formosus | 44.87 | 6e-98 | 317 |
| LLPS-Cae-1903 | Caenorhabditis elegans | 44.59 | 3e-100 | 322 |
| LLPS-Icp-3499 | Ictalurus punctatus | 44.42 | 3e-96 | 313 |
| LLPS-Leo-3900 | Lepisosteus oculatus | 44.42 | 3e-97 | 316 |
| LLPS-Chc-1090 | Chondrus crispus | 44.15 | 6e-103 | 330 |
| LLPS-Orl-2612 | Oryzias latipes | 44.0 | 8e-97 | 315 |
| LLPS-Asm-1391 | Astyanax mexicanus | 43.88 | 3e-97 | 316 |
| LLPS-Xet-0034 | Xenopus tropicalis | 43.88 | 1e-96 | 314 |
| LLPS-Ora-0025 | Ornithorhynchus anatinus | 43.62 | 3e-96 | 313 |
| LLPS-Ran-1250 | Rattus norvegicus | 43.37 | 1e-96 | 314 |
| LLPS-Paa-0207 | Papio anubis | 43.37 | 1e-96 | 314 |
| LLPS-Mal-0429 | Mandrillus leucophaeus | 43.37 | 1e-96 | 314 |
| LLPS-Tut-1728 | Tursiops truncatus | 43.37 | 1e-96 | 314 |
| LLPS-Dio-2971 | Dipodomys ordii | 43.37 | 1e-96 | 314 |
| LLPS-Gog-0777 | Gorilla gorilla | 43.37 | 9e-97 | 314 |
| LLPS-Fud-0422 | Fukomys damarensis | 43.37 | 9e-97 | 314 |
| LLPS-Caj-2559 | Callithrix jacchus | 43.37 | 2e-97 | 314 |
| LLPS-Mea-2737 | Mesocricetus auratus | 43.37 | 1e-96 | 314 |
| LLPS-Maf-0229 | Macaca fascicularis | 43.37 | 9e-97 | 314 |
| LLPS-Mum-1264 | Mus musculus | 43.37 | 1e-96 | 314 |
| LLPS-Chs-2023 | Chlorocebus sabaeus | 43.37 | 1e-96 | 314 |
| LLPS-Cea-0422 | Cercocebus atys | 43.37 | 9e-97 | 314 |
| LLPS-Aon-0857 | Aotus nancymaae | 43.37 | 4e-96 | 314 |
| LLPS-Sus-0455 | Sus scrofa | 43.37 | 1e-96 | 314 |
| LLPS-Cas-1616 | Carlito syrichta | 43.37 | 9e-97 | 314 |
| LLPS-Ict-1065 | Ictidomys tridecemlineatus | 43.37 | 1e-96 | 314 |
| LLPS-Nol-2345 | Nomascus leucogenys | 43.37 | 1e-96 | 314 |
| LLPS-Poa-1446 | Pongo abelii | 43.37 | 1e-96 | 314 |
| LLPS-Eqc-0127 | Equus caballus | 43.37 | 1e-96 | 314 |
| LLPS-Cap-0368 | Cavia porcellus | 43.37 | 8e-97 | 314 |
| LLPS-Mam-2901 | Macaca mulatta | 43.37 | 9e-97 | 314 |
| LLPS-Orc-0988 | Oryctolagus cuniculus | 43.37 | 6e-97 | 314 |
| LLPS-Rhb-2701 | Rhinopithecus bieti | 43.37 | 1e-96 | 314 |
| LLPS-Pat-0455 | Pan troglodytes | 43.37 | 1e-96 | 314 |
| LLPS-Urm-0935 | Ursus maritimus | 43.37 | 1e-96 | 314 |
| LLPS-Pap-2497 | Pan paniscus | 43.37 | 1e-96 | 314 |
| LLPS-Hos-0055 | Homo sapiens | 43.37 | 1e-96 | 314 |
| LLPS-Fec-1536 | Felis catus | 43.37 | 2e-96 | 314 |
| LLPS-Dar-0275 | Danio rerio | 42.86 | 4e-96 | 313 |