LLPS-Ran-3603
Sorbs3
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | Sorbin and SH3 domain containing 3, isoform CRA_b |
Gene Name: | Sorbs3, rCG_36878 |
Ensembl Gene: | ENSRNOG00000008829.4 |
Ensembl Protein: | ENSRNOP00000012056.4 |
Organism: | Rattus norvegicus |
Taxa ID: | 10116 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Stress granule | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | ENSRNOT00000012056.4 | ENSRNOP00000012056.4 |
UniProt | Q5XIL4, Q5XIL4_RAT | |
GeneBank | BC083666, CH473951, AC111804, AC126842 | , AAH83666.1, EDM02209.1 |
RefSeq | NM_001005762.1, XM_006252241.3, XM_006252242.1 | NP_001005762.1, XP_006252303.1, XP_006252304.1 |
Entrez | 282843 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MARIPGVGRS STSSLDNKED SESDVALLSP KDPDRVHTKE QLAHPVSSNL DPSMQGLPAG 60 61 LSLDDFIPGH LRAHIGASSR GTRVPVIRNG GSNTLNFQFH DPAPRTVCNG CPPPRRDGSQ 120 121 HPDPAWYQTW PGPGSQPSVS PKQPAPQNAQ NWSATWTKDS KRRDKRWVKY EGIGPVDESG 180 181 MPIAPRSSVD SPRDWYRRMF QQIHRKMPDL QLDWTLEDPP KVVSSRASSA DPRHPGPQQR 240 241 PASRPGTTGT SSGRNWNHSE ETSRNTLNYN LGPSSRLHAS NQVPRHREKV ENVWTEDSWN 300 301 QFLHELETGH KPKKSLVDDP VEKPAQPIEV LLERELAKLS AELDKDLRAI ETRLPSPKNS 360 361 QAPRRPLEQP GPEQQPSARL SSAWRPNSPH APYFGSSRPL SPHRMADGGG SPFLGRRDFV 420 421 YPSSAREPSA SERGSSPARK EEKKRKAARL KFDFQAQSPK ELTLQKGDIV YIHKEVDKNW 480 481 LEGEHHGRLG IFPANYVEVL PADEIPKPIK PPTYQVLEYG DAVAQYTFKG DLDVELSFRK 540 541 GERICLIRKV NEHWYEGRIT GTGRQGIFPA SYVQINREPR LRLCDDSPQL PTSPHLTTTA 600 601 HLGSHSQPSS IPVDPTDWGG RTSPRRSAFP FPITLQEPRS QPQSLSTPGP TLSHPRGTSH 660 661 PTNLGSSSLN TTEIHWTPYR AMYQYRPQNE DELELREGDR VDVMQQCDDG WFVGVSRRTQ 720 721 KFGTFPGNYV APV 733 |
Nucleotide CDS Sequence (FASTA) |
1 ATGGCCAGGA TTCCCGGAGT GGGAAGATCT TCAACTTCGT CTTTGGACAA CAAAGAAGAC 60 61 AGTGAAAGTG ATGTGGCCCT TCTTAGTCCC AAGGACCCTG ACAGAGTACA CACGAAGGAG 120 121 CAGCTGGCAC ATCCTGTGTC CTCCAACCTT GACCCAAGCA TGCAAGGCCT CCCTGCTGGG 180 181 CTCAGCCTGG ATGATTTCAT CCCTGGCCAC CTCCGGGCCC ATATAGGTGC ATCTTCCCGG 240 241 GGGACAAGGG TGCCTGTGAT CCGGAATGGT GGCTCCAACA CCCTTAATTT CCAGTTTCAT 300 301 GACCCTGCAC CCAGGACTGT GTGCAACGGC TGTCCCCCGC CCAGGAGAGA TGGTTCCCAG 360 361 CATCCAGACC CAGCATGGTA TCAGACCTGG CCAGGCCCTG GGAGTCAGCC CTCTGTGAGC 420 421 CCTAAGCAGC CTGCCCCCCA GAATGCCCAG AACTGGTCAG CCACATGGAC CAAGGACAGC 480 481 AAGCGGCGGG ACAAGCGCTG GGTGAAGTAC GAGGGAATCG GGCCCGTGGA TGAGAGCGGC 540 541 ATGCCCATTG CCCCCCGATC AAGTGTCGAC AGCCCCAGAG ACTGGTATCG GAGAATGTTC 600 601 CAGCAAATTC ACCGGAAAAT GCCAGACCTG CAGCTGGACT GGACCTTGGA AGACCCACCC 660 661 AAAGTGGTTT CCTCACGTGC CTCTTCTGCA GACCCCAGGC ATCCAGGGCC CCAACAAAGA 720 721 CCTGCCTCCA GGCCTGGCAC AACTGGGACT TCGAGCGGAA GAAACTGGAA CCACTCTGAA 780 781 GAGACATCTA GAAATACCTT GAACTATAAT CTTGGACCAT CCTCAAGGCT TCATGCCTCA 840 841 AATCAGGTGC CTAGACATCG AGAGAAAGTA GAGAATGTCT GGACAGAAGA CTCCTGGAAC 900 901 CAGTTTCTGC ACGAACTAGA AACTGGGCAT AAGCCCAAGA AATCACTGGT GGATGACCCT 960 961 GTTGAGAAAC CTGCACAGCC CATTGAGGTC CTGCTAGAGA GAGAACTGGC CAAGCTGAGC 1020 1021 GCAGAGCTGG ACAAGGACCT GCGGGCCATT GAGACCCGCC TGCCATCCCC CAAGAACTCT 1080 1081 CAGGCTCCAC GACGGCCCCT TGAGCAGCCC GGCCCGGAGC AGCAGCCCTC CGCCCGACTG 1140 1141 TCCTCAGCCT GGAGGCCCAA CTCACCGCAT GCACCTTACT TCGGTTCCTC CCGACCCCTG 1200 1201 AGCCCCCACA GAATGGCAGA TGGAGGAGGA AGCCCCTTTC TGGGACGTAG AGATTTTGTC 1260 1261 TACCCTTCCT CAGCCCGAGA GCCTAGTGCC TCTGAAAGGG GTAGCAGCCC TGCGAGGAAG 1320 1321 GAGGAGAAGA AGAGGAAGGC TGCCCGGCTC AAGTTTGACT TCCAGGCGCA GTCCCCCAAG 1380 1381 GAGCTGACTC TGCAGAAGGG TGACATTGTC TATATCCATA AAGAAGTGGA CAAGAACTGG 1440 1441 CTGGAGGGGG AACACCATGG CCGACTGGGC ATCTTCCCAG CTAATTATGT GGAGGTTCTG 1500 1501 CCTGCAGATG AGATTCCCAA GCCCATCAAG CCGCCCACAT ACCAGGTGCT GGAGTATGGA 1560 1561 GATGCTGTAG CCCAGTATAC CTTCAAGGGA GACCTGGATG TGGAGCTGTC CTTCCGAAAG 1620 1621 GGGGAACGCA TCTGCCTGAT CCGCAAAGTG AATGAACATT GGTACGAGGG GCGCATCACG 1680 1681 GGCACGGGAC GCCAAGGCAT CTTCCCTGCC AGCTACGTGC AGATAAACCG GGAGCCCCGG 1740 1741 CTCAGGCTCT GCGACGATAG TCCCCAGCTC CCTACATCAC CTCACCTGAC AACCACTGCT 1800 1801 CATCTAGGCA GCCACTCCCA ACCCTCCTCA ATACCTGTGG ACCCCACTGA CTGGGGAGGT 1860 1861 CGGACCTCCC CCCGACGCTC TGCCTTCCCC TTCCCCATCA CCCTTCAGGA GCCCAGATCC 1920 1921 CAACCCCAGA GTCTCAGTAC CCCTGGACCA ACCCTGTCCC ATCCACGAGG CACCAGCCAT 1980 1981 CCCACAAACC TGGGGTCCTC CTCCCTAAAC ACCACAGAGA TACACTGGAC TCCGTACCGG 2040 2041 GCCATGTACC AGTACAGACC CCAGAATGAA GATGAGCTGG AACTTCGTGA GGGAGACCGT 2100 2101 GTGGATGTCA TGCAGCAGTG TGATGATGGC TGGTTTGTGG GTGTCTCCCG GAGAACTCAG 2160 2161 AAATTTGGGA CATTCCCTGG AAATTATGTA GCCCCGGTGT GA 2202 |
▼ ANNOTATION
Physicochemical | ||||
Compute pI/Mw | AAindex |
Localization | ||||
COMPARTMENTS |
Expression | ||||
ArrayExpress | TISSUES |
Element | ||||
miRWalk | RAID | microRNA.org |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Mum-4596 | Mus musculus | 93.32 | 0.0 | 1345 |
LLPS-Mea-3693 | Mesocricetus auratus | 90.2 | 0.0 | 1319 |
LLPS-Tag-0277 | Taeniopygia guttata | 81.32 | 1e-43 | 157 |
LLPS-Hos-2419 | Homo sapiens | 80.38 | 0.0 | 1068 |
LLPS-Pap-2511 | Pan paniscus | 80.09 | 0.0 | 1068 |
LLPS-Lac-3058 | Latimeria chalumnae | 80.0 | 2e-21 | 104 |
LLPS-Poa-2529 | Pongo abelii | 79.94 | 0.0 | 1048 |
LLPS-Gog-2313 | Gorilla gorilla | 79.83 | 0.0 | 1036 |
LLPS-Sus-4379 | Sus scrofa | 79.82 | 0.0 | 1008 |
LLPS-Nol-1045 | Nomascus leucogenys | 79.8 | 0.0 | 1048 |
LLPS-Cea-1466 | Cercocebus atys | 79.65 | 0.0 | 1049 |
LLPS-Paa-3077 | Papio anubis | 79.65 | 0.0 | 1059 |
LLPS-Mam-3739 | Macaca mulatta | 79.65 | 0.0 | 1060 |
LLPS-Maf-2791 | Macaca fascicularis | 79.51 | 0.0 | 1045 |
LLPS-Aon-1699 | Aotus nancymaae | 79.36 | 0.0 | 1054 |
LLPS-Pat-0208 | Pan troglodytes | 79.36 | 0.0 | 1051 |
LLPS-Fec-2421 | Felis catus | 79.35 | 0.0 | 916 |
LLPS-Caj-3888 | Callithrix jacchus | 79.13 | 0.0 | 1053 |
LLPS-Man-3903 | Macaca nemestrina | 79.11 | 0.0 | 1118 |
LLPS-Rhb-3145 | Rhinopithecus bieti | 79.07 | 0.0 | 1062 |
LLPS-Chs-4031 | Chlorocebus sabaeus | 78.98 | 0.0 | 1110 |
LLPS-Mup-1293 | Mustela putorius furo | 78.81 | 0.0 | 1117 |
LLPS-Aim-2712 | Ailuropoda melanoleuca | 78.46 | 0.0 | 1098 |
LLPS-Ict-0595 | Ictidomys tridecemlineatus | 78.28 | 0.0 | 1125 |
LLPS-Loa-2377 | Loxodonta africana | 77.79 | 0.0 | 1090 |
LLPS-Otg-2268 | Otolemur garnettii | 77.79 | 0.0 | 1098 |
LLPS-Eqc-3749 | Equus caballus | 77.67 | 0.0 | 1089 |
LLPS-Bot-2872 | Bos taurus | 77.62 | 0.0 | 1014 |
LLPS-Cap-1088 | Cavia porcellus | 77.38 | 0.0 | 1031 |
LLPS-Meg-3252 | Meleagris gallopavo | 76.92 | 7e-20 | 99.4 |
LLPS-Anp-0240 | Anas platyrhynchos | 76.92 | 8e-20 | 99.4 |
LLPS-Fia-2012 | Ficedula albicollis | 76.92 | 6e-20 | 99.8 |
LLPS-Orc-2128 | Oryctolagus cuniculus | 75.74 | 0.0 | 1067 |
LLPS-Xim-2407 | Xiphophorus maculatus | 75.47 | 6e-20 | 99.8 |
LLPS-Xet-1067 | Xenopus tropicalis | 75.47 | 3e-20 | 100 |
LLPS-Ova-3911 | Ovis aries | 75.34 | 0.0 | 1031 |
LLPS-Cas-2935 | Carlito syrichta | 75.14 | 0.0 | 969 |
LLPS-Scm-0194 | Scophthalmus maximus | 75.0 | 5e-19 | 96.3 |
LLPS-Fud-0693 | Fukomys damarensis | 74.6 | 2e-146 | 438 |
LLPS-Ora-3090 | Ornithorhynchus anatinus | 74.55 | 2e-20 | 101 |
LLPS-Gaa-0624 | Gasterosteus aculeatus | 74.55 | 2e-20 | 100 |
LLPS-Myl-1378 | Myotis lucifugus | 74.55 | 1e-20 | 101 |
LLPS-Caf-0708 | Canis familiaris | 74.55 | 2e-20 | 101 |
LLPS-Asm-1319 | Astyanax mexicanus | 74.29 | 2e-09 | 65.5 |
LLPS-Leo-2872 | Lepisosteus oculatus | 73.58 | 6e-19 | 96.3 |
LLPS-Icp-3937 | Ictalurus punctatus | 73.58 | 6e-19 | 96.3 |
LLPS-Mod-3628 | Monodelphis domestica | 73.58 | 1e-19 | 98.6 |
LLPS-Urm-0313 | Ursus maritimus | 73.07 | 0.0 | 1011 |
LLPS-Mal-3584 | Mandrillus leucophaeus | 73.0 | 0.0 | 938 |
LLPS-Orn-0186 | Oreochromis niloticus | 72.22 | 2e-09 | 65.9 |
LLPS-Ten-2316 | Tetraodon nigroviridis | 72.22 | 1e-09 | 65.5 |
LLPS-Dar-3033 | Danio rerio | 71.43 | 9e-09 | 62.8 |
LLPS-Dio-2383 | Dipodomys ordii | 70.27 | 0.0 | 974 |
LLPS-Orl-2120 | Oryzias latipes | 69.44 | 3e-09 | 64.7 |
LLPS-Tar-0060 | Takifugu rubripes | 69.44 | 3e-09 | 64.7 |
LLPS-Sah-0670 | Sarcophilus harrisii | 68.57 | 4e-08 | 61.2 |
LLPS-Tut-1991 | Tursiops truncatus | 68.57 | 9e-08 | 60.1 |
LLPS-Pes-2678 | Pelodiscus sinensis | 68.57 | 4e-08 | 61.2 |
LLPS-Gaga-3120 | Gallus gallus | 68.57 | 4e-08 | 61.2 |
LLPS-Anc-1890 | Anolis carolinensis | 68.57 | 3e-08 | 61.6 |
LLPS-Scf-2198 | Scleropages formosus | 68.12 | 3e-21 | 103 |
LLPS-Pof-3842 | Poecilia formosa | 64.58 | 3e-12 | 74.3 |
LLPS-Cii-1468 | Ciona intestinalis | 60.53 | 5e-07 | 57.0 |
LLPS-Drm-1958 | Drosophila melanogaster | 56.0 | 4e-09 | 64.7 |
LLPS-Scc-0314 | Schizosaccharomyces cryophilus | 46.94 | 2e-07 | 58.9 |
LLPS-Miv-0904 | Microbotryum violaceum | 34.03 | 2e-16 | 87.4 |
LLPS-Blg-1241 | Blumeria graminis | 32.09 | 8e-11 | 69.7 |
LLPS-Asfu-1479 | Aspergillus fumigatus | 31.72 | 1e-10 | 69.3 |
LLPS-Nef-1172 | Neosartorya fischeri | 30.34 | 2e-10 | 68.2 |
LLPS-Nec-0049 | Neurospora crassa | 29.61 | 3e-11 | 71.2 |
LLPS-Phn-0943 | Phaeosphaeria nodorum | 29.25 | 9e-11 | 69.7 |
LLPS-Asc-1177 | Aspergillus clavatus | 29.14 | 4e-11 | 70.9 |
LLPS-Asni-0527 | Aspergillus niger | 29.14 | 4e-10 | 67.8 |
LLPS-Pug-1460 | Puccinia graminis | 28.97 | 2e-11 | 71.6 |