LLPS-Ran-0789
Snrnp40

▼ OVERVIEW

Status: Unreviewed
Protein Name: Small nuclear ribonucleoprotein U5 subunit 40
Gene Name: Snrnp40
Ensembl Gene: ENSRNOG00000012219.7
Ensembl Protein: ENSRNOP00000016325.6
Organism: Rattus norvegicus
Taxa ID: 10116
LLPS Type: Client


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateEvidenceOrthologs
NucleolusPredicted from orthologs(View)

▼ CROSS REFERENCE

▼ SEQUENCE

Protein Sequence (FASTA)
1     MLEIDWLLSS  GSSGGRTQLK  PIAQRLLQAA  RLLAAPRVVV  AAMIEQQKRK  GPELPLVPVK  60
61    RPRHELLLGA  AGSGPGAGQQ  QATPGALLQT  GPPRCSSLQA  PIMLLSGHEG  EVYCCKFHPN  120
121   GSTLASAGFD  RLILLWSVYG  DCDNYATLKG  HSGAVMELHY  NTDGSMLFSA  STDKTVAVWD  180
181   SETGERVKRL  KGHTSFVNSC  YPARRGPQLV  CTGSDDGTVK  LWDIRKKAAI  QTFQNTYQVL  240
241   AVTFNDTSDQ  IISGGIDNDI  KVWDLRQNKL  TYTMRGHADS  VTGLSLSSEG  SYLLSNAMDN  300
301   TVRVWDVRPF  APKERCVKIF  QGNVHNFEKN  LLRCSWSPDG  SKIAAGSADR  FVYVWDTTSR  360
361   RILYKLPGHA  GSINEVAFHP  DEPIILSASS  DKRLYMGEIQ  400
Nucleotide CDS Sequence (FASTA)
1     ATGTTAGAAA  TCGATTGGTT  GCTCTCTTCC  GGAAGTTCTG  GAGGAAGAAC  TCAGTTGAAA  60
61    CCAATTGCGC  AACGCCTGCT  GCAGGCGGCG  CGGTTACTGG  CGGCGCCGAG  GGTAGTGGTT  120
121   GCCGCCATGA  TCGAGCAGCA  GAAACGCAAG  GGCCCAGAGC  TACCCCTGGT  TCCCGTCAAG  180
181   CGGCCGCGAC  ATGAGTTGCT  GTTGGGAGCC  GCAGGATCCG  GCCCCGGAGC  CGGGCAACAG  240
241   CAGGCGACTC  CGGGGGCATT  GCTGCAGACG  GGACCGCCAA  GGTGTTCGTC  CCTTCAAGCC  300
301   CCCATCATGC  TGCTCTCAGG  ACACGAAGGG  GAAGTGTATT  GCTGCAAGTT  TCACCCCAAT  360
361   GGATCTACCC  TGGCTTCTGC  AGGATTTGAC  CGACTCATAC  TACTGTGGAG  CGTCTATGGA  420
421   GACTGTGACA  ACTATGCTAC  GTTGAAGGGA  CACAGCGGAG  CAGTAATGGA  GCTGCACTAC  480
481   AACACAGACG  GCAGCATGCT  CTTCTCAGCA  TCAACAGATA  AAACTGTGGC  AGTGTGGGAT  540
541   AGTGAAACAG  GAGAGAGAGT  TAAAAGGCTA  AAAGGGCATA  CTTCCTTTGT  GAACTCCTGT  600
601   TATCCAGCCA  GGCGGGGGCC  CCAGCTTGTC  TGCACAGGCA  GCGACGATGG  CACAGTTAAG  660
661   CTTTGGGACA  TCCGGAAGAA  AGCAGCCATC  CAGACATTTC  AGAACACATA  CCAGGTGTTA  720
721   GCCGTCACCT  TCAATGACAC  GAGCGATCAG  ATCATCTCTG  GCGGAATAGA  CAATGACATC  780
781   AAGGTTTGGG  ACCTACGCCA  AAACAAGTTA  ACCTACACCA  TGAGAGGCCA  TGCCGACTCT  840
841   GTAACTGGCT  TGAGCTTGAG  TTCTGAAGGA  TCTTATCTCT  TGTCCAATGC  AATGGACAAC  900
901   ACAGTGCGTG  TCTGGGATGT  CCGGCCATTT  GCTCCCAAAG  AGAGATGTGT  GAAGATATTT  960
961   CAAGGAAATG  TCCACAACTT  TGAAAAGAAC  CTCCTGAGGT  GTTCCTGGTC  ACCAGACGGA  1020
1021  AGCAAGATAG  CAGCTGGCTC  AGCAGACAGG  TTTGTGTACG  TGTGGGACAC  CACAAGCAGA  1080
1081  AGGATCCTGT  ATAAGCTTCC  TGGTCATGCT  GGCTCCATCA  ATGAGGTGGC  CTTCCATCCC  1140
1141  GATGAGCCCA  TCATCCTCTC  AGCATCCAGT  GACAAGAGGC  TGTACATGGG  TGAGATCCAG  1200
1201  TGA  1203

▼ ANNOTATION

Disorder
D2P2IUPred2A
Interaction
RAINIIDMIST
Physicochemical
Compute pI/MwAAindex
Function
iEKPD
Localization
COMPARTMENTS

▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Dio-1970Dipodomys ordii99.160.0 660
LLPS-Sus-1684Sus scrofa98.880.0 659
LLPS-Bot-4714Bos taurus98.880.0 659
LLPS-Otg-0033Otolemur garnettii98.880.0 657
LLPS-Ict-1481Ictidomys tridecemlineatus98.880.0 657
LLPS-Aon-2580Aotus nancymaae98.60.0 657
LLPS-Fec-3308Felis catus98.60.0 659
LLPS-Caf-2950Canis familiaris98.60.0 659
LLPS-Eqc-4178Equus caballus98.60.0 659
LLPS-Mum-4619Mus musculus98.320.0 659
LLPS-Fud-1992Fukomys damarensis98.320.0 658
LLPS-Caj-0917Callithrix jacchus98.320.0 654
LLPS-Mup-3641Mustela putorius furo98.320.0 657
LLPS-Cas-3723Carlito syrichta98.320.0 652
LLPS-Ova-1355Ovis aries98.060.0 653
LLPS-Urm-3401Ursus maritimus98.040.0 657
LLPS-Myl-4130Myotis lucifugus97.950.0 625
LLPS-Pes-0868Pelodiscus sinensis97.740.0 614
LLPS-Cap-0888Cavia porcellus97.490.0 655
LLPS-Meg-1761Meleagris gallopavo97.420.0 612
LLPS-Fia-2229Ficedula albicollis96.770.0 609
LLPS-Loa-4299Loxodonta africana96.650.0 652
LLPS-Mea-2553Mesocricetus auratus95.530.0 627
LLPS-Aim-3671Ailuropoda melanoleuca94.740.0 622
LLPS-Chs-1323Chlorocebus sabaeus94.410.0 653
LLPS-Gog-2237Gorilla gorilla94.410.0 653
LLPS-Mal-0809Mandrillus leucophaeus94.410.0 653
LLPS-Pat-3372Pan troglodytes94.410.0 653
LLPS-Pap-0566Pan paniscus94.410.0 653
LLPS-Hos-3840Homo sapiens94.410.0 653
LLPS-Man-4782Macaca nemestrina94.410.0 653
LLPS-Poa-1727Pongo abelii94.410.0 653
LLPS-Nol-3726Nomascus leucogenys94.410.0 653
LLPS-Sah-2995Sarcophilus harrisii93.910.0 644
LLPS-Orc-0699Oryctolagus cuniculus93.750.0 682
LLPS-Mod-0839Monodelphis domestica93.070.0 644
LLPS-Paa-1175Papio anubis91.520.0 662
LLPS-Maf-1345Macaca fascicularis90.250.0 674
LLPS-Cea-3769Cercocebus atys90.250.0 674
LLPS-Rhb-2628Rhinopithecus bieti90.250.0 674
LLPS-Mam-4028Macaca mulatta90.250.0 674
LLPS-Gaga-3459Gallus gallus89.490.0 621
LLPS-Tag-3616Taeniopygia guttata87.140.0 588
LLPS-Lac-4033Latimeria chalumnae86.630.0 617
LLPS-Leo-3585Lepisosteus oculatus85.360.0 610
LLPS-Xet-0424Xenopus tropicalis85.280.0 598
LLPS-Scf-1912Scleropages formosus84.440.0 602
LLPS-Scm-0223Scophthalmus maximus83.610.0 595
LLPS-Icp-0688Ictalurus punctatus83.060.0 592
LLPS-Gaa-3472Gasterosteus aculeatus83.060.0 592
LLPS-Ten-0115Tetraodon nigroviridis83.060.0 592
LLPS-Tar-3759Takifugu rubripes82.850.0 563
LLPS-Pof-0011Poecilia formosa82.220.0 588
LLPS-Orn-4038Oreochromis niloticus81.990.0 582
LLPS-Xim-0600Xiphophorus maculatus81.940.0 587
LLPS-Dar-0026Danio rerio81.390.0 585
LLPS-Anc-4019Anolis carolinensis81.160.0 582
LLPS-Ora-0961Ornithorhynchus anatinus79.610.0 531
LLPS-Asm-1935Astyanax mexicanus76.730.0 578
LLPS-Orl-2216Oryzias latipes76.170.0 574
LLPS-Nia-1920Nicotiana attenuata63.116e-145 423
LLPS-Arl-2086Arabidopsis lyrata62.461e-140 412
LLPS-Gor-1227Gossypium raimondii62.466e-142 415
LLPS-Sol-0847Solanum lycopersicum62.141e-141 416
LLPS-Brn-1161Brassica napus62.141e-139 412
LLPS-Sot-1714Solanum tuberosum62.148e-143 417
LLPS-Brr-2997Brassica rapa62.148e-140 412
LLPS-Thc-0808Theobroma cacao61.815e-141 413
LLPS-Drm-0662Drosophila melanogaster61.812e-140 411
LLPS-Art-0243Arabidopsis thaliana61.814e-140 410
LLPS-Coc-1033Corchorus capsularis61.816e-141 412
LLPS-Prp-1852Prunus persica61.817e-140 410
LLPS-Hea-0107Helianthus annuus61.499e-138 404
LLPS-Pot-2469Populus trichocarpa61.492e-141 414
LLPS-Bro-3036Brassica oleracea61.495e-137 404
LLPS-Glm-0135Glycine max60.844e-139 408
LLPS-Viv-1869Vitis vinifera60.846e-140 410
LLPS-Phv-2529Phaseolus vulgaris60.841e-139 409
LLPS-Vir-0345Vigna radiata60.522e-137 405
LLPS-Mae-2141Manihot esculenta60.522e-137 404
LLPS-Cus-1305Cucumis sativus60.464e-138 405
LLPS-Dac-1966Daucus carota60.192e-138 406
LLPS-Via-0638Vigna angularis60.191e-136 402
LLPS-Met-2203Medicago truncatula59.872e-138 407
LLPS-Orbr-1204Oryza brachyantha59.872e-134 399
LLPS-Org-1769Oryza glaberrima59.876e-136 400
LLPS-Orb-0292Oryza barthii59.556e-136 399
LLPS-Ori-2400Oryza indica59.554e-136 400
LLPS-Orni-1990Oryza nivara59.554e-136 400
LLPS-Orgl-2182Oryza glumaepatula59.554e-136 400
LLPS-Lep-0191Leersia perrieri59.551e-133 399
LLPS-Ors-1566Oryza sativa59.551e-135 399
LLPS-Orp-0388Oryza punctata59.554e-136 400
LLPS-Orm-0252Oryza meridionalis59.552e-135 398
LLPS-Orr-0872Oryza rufipogon59.551e-134 399
LLPS-Brd-0020Brachypodium distachyon59.221e-134 397
LLPS-Tra-2112Triticum aestivum59.224e-136 400
LLPS-Amt-2098Amborella trichopoda59.053e-137 404
LLPS-Hov-0427Hordeum vulgare58.98e-135 397
LLPS-Cii-1515Ciona intestinalis58.849e-145 423
LLPS-Sei-2507Setaria italica58.582e-133 397
LLPS-Sob-2144Sorghum bicolor58.582e-134 396
LLPS-Zem-2127Zea mays58.582e-134 395
LLPS-Cae-1476Caenorhabditis elegans57.522e-127 378
LLPS-Abg-1482Absidia glauca57.339e-129 382
LLPS-Php-0503Physcomitrella patens57.224e-138 406
LLPS-Mua-1456Musa acuminata56.311e-122 365
LLPS-Chr-1507Chlamydomonas reinhardtii54.783e-121 363
LLPS-Tum-1627Tuber melanosporum51.464e-112 340
LLPS-Aso-0646Aspergillus oryzae50.04e-106 324
LLPS-Ved-0583Verticillium dahliae49.844e-105 322
LLPS-Scs-0668Sclerotinia sclerotiorum49.512e-105 322
LLPS-Asf-0937Aspergillus flavus49.333e-100 307
LLPS-Asc-1430Aspergillus clavatus49.038e-105 321
LLPS-Nef-1359Neosartorya fischeri49.039e-105 321
LLPS-Pytr-1511Pyrenophora triticirepentis48.868e-104 320
LLPS-Asn-1010Aspergillus nidulans48.74e-106 324
LLPS-Asfu-0188Aspergillus fumigatus48.72e-104 320
LLPS-Coo-0273Colletotrichum orbiculare48.548e-106 323
LLPS-Phn-0850Phaeosphaeria nodorum48.473e-96 301
LLPS-Mao-1040Magnaporthe oryzae48.222e-102 315
LLPS-Nec-1114Neurospora crassa48.223e-104 319
LLPS-Cogr-0542Colletotrichum graminicola48.221e-105 323
LLPS-Asni-1373Aspergillus niger48.182e-99 307
LLPS-Pyt-0687Pyrenophora teres48.055e-104 319
LLPS-Zyt-0154Zymoseptoria tritici47.872e-103 317
LLPS-Map-0981Magnaporthe poae45.952e-97 302
LLPS-Gas-1360Galdieria sulphuraria45.661e-90 284
LLPS-Trr-1107Trichoderma reesei45.638e-102 313
LLPS-Ast-1199Aspergillus terreus45.454e-90 282
LLPS-Trv-1232Trichoderma virens44.822e-94 294
LLPS-Dos-1460Dothistroma septosporum44.592e-94 294
LLPS-Lem-0393Leptosphaeria maculans44.522e-93 292
LLPS-Mel-0333Melampsora laricipopulina43.267e-75 244
LLPS-Pug-1228Puccinia graminis42.322e-75 245
LLPS-Crn-0752Cryptococcus neoformans42.091e-69 231
LLPS-Scc-1016Schizosaccharomyces cryophilus42.096e-90 282
LLPS-Put-0799Puccinia triticina42.014e-75 244
LLPS-Osl-1346Ostreococcus lucimarinus41.641e-64 215
LLPS-Miv-0798Microbotryum violaceum39.086e-64 216
LLPS-Scj-0598Schizosaccharomyces japonicus38.264e-66 220
LLPS-Cis-1325Ciona savignyi33.451e-37 145
LLPS-Kop-0204Komagataella pastoris33.335e-40 150
LLPS-Anp-3344Anas platyrhynchos33.12e-36 141
LLPS-Gag-1017Gaeumannomyces graminis32.681e-32 136