• Disorder▼
  • Domain▼
  • PTM▼
  • Variation▼
  • Mutation▼
  • Interaction▼
  • Disease▼
  • Drug▼
  • Physicochemical▼
  • Function▼
  • Proteomics▼
  • Structure▼
  • Localization▼
  • Expression▼
  • Element▼
  • Methylation▼

LLPS-Pot-2141
POPTR_004G121500

Integrated Annotations

▼ OVERVIEW

Status: Unreviewed
Protein Name: 60S ribosomal export protein NMD3
Gene Name: POPTR_004G121500
Ensembl Gene: POPTR_004G121500v3
Ensembl Protein: PNT40828
Organism: Populus trichocarpa
Taxa ID: 3694
LLPS Type: LLPS regulator


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateEvidenceOrthologs
Nucleolus, P-bodyPredicted from orthologs(View)

▼ FUNCTION

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

▼ CROSS REFERENCE

DatabaseNucleotide IDProtein ID
EnsemblPNT40828PNT40828
UniProtB9H0C6, B9H0C6_POPTR
GeneBankCM009293PNT40828.1
RefSeqXM_002305999.2XP_002306035.2

▼ SEQUENCE

Protein Sequence (FASTA)
1     MAEEAGMFMV  HQTIGSVLCC  KCGIPMQPNA  ANMCVKCLRS  EVDITEGLKK  NVILLHCPEC  60
61    DTYLDPPSTR  IRAQLESREL  MAFCLKKLKL  KSTGVILVNA  EFIWTEPHSK  RIKLRVRVQK  120
121   EVLHGAILEQ  AYVIEYVQQD  QMCDSCTRVQ  ANPDQWVAGV  QLRQHVAHRR  TFFYLEQLIL  180
181   KHDAAARAIK  IKQMDHGIDF  FFANRSHGVK  FVDFVGKVAP  VKSRTDKQLV  SHDTKSNNYN  240
241   YKHTFSVEIS  PICREDLVCL  PPRVAVSLGN  LGPLVICSKV  TNSIALLDPF  TLRHCFLDAD  300
301   QYWRTPFKSL  LTSRQLVEYI  VFDVDFVSPE  VNIGGSRYAL  ADATVARMSD  FGKNDTMFNI  360
361   KTHLGHILKP  GDYALGYDLH  GANSNDMELD  KYKNLVIPEA  ILVKKSYEEK  RQRKRGKPRS  420
421   WKLKSLNMEV  DDTRARGDQE  KMNSEYEQFL  RDLEENPELR  FNVSLYRNKE  YQPSEMASMT  480
481   DGEDIPSIPL  EELLADLEIN  DAEDEDEGMG  E  511
Nucleotide CDS Sequence (FASTA)
1     ATGGCCGAAG  AAGCAGGCAT  GTTTATGGTT  CATCAAACAA  TTGGAAGTGT  TTTGTGTTGC  60
61    AAATGTGGTA  TTCCTATGCA  ACCAAATGCT  GCTAATATGT  GTGTTAAGTG  TTTGCGCTCT  120
121   GAAGTTGACA  TCACTGAAGG  TCTAAAGAAG  AATGTAATTC  TTTTACATTG  CCCGGAGTGT  180
181   GATACCTACT  TGGATCCACC  TAGTACGCGG  ATTAGGGCCC  AACTGGAATC  GAGGGAGTTG  240
241   ATGGCATTTT  GTCTGAAGAA  GTTGAAATTG  AAGTCCACAG  GAGTTATTTT  GGTAAATGCG  300
301   GAATTTATTT  GGACTGAACC  ACATTCCAAG  AGGATCAAGC  TCCGAGTGAG  AGTTCAGAAG  360
361   GAGGTCCTTC  ATGGTGCAAT  ACTCGAACAA  GCATATGTTA  TTGAGTATGT  TCAGCAGGAC  420
421   CAAATGTGTG  ATTCTTGCAC  AAGAGTTCAG  GCCAACCCTG  ATCAGTGGGT  TGCTGGTGTC  480
481   CAGCTCCGGC  AACATGTTGC  TCATAGAAGA  ACTTTCTTTT  ACTTGGAGCA  GCTGATTTTG  540
541   AAGCATGATG  CTGCTGCCCG  TGCCATTAAA  ATAAAGCAAA  TGGATCATGG  TATTGATTTT  600
601   TTCTTTGCAA  ATCGTAGCCA  TGGTGTTAAA  TTTGTTGACT  TTGTGGGTAA  AGTAGCTCCA  660
661   GTAAAGAGTC  GCACTGACAA  GCAACTTGTT  TCCCATGATA  CTAAGAGCAA  CAACTATAAT  720
721   TACAAACATA  CTTTCTCTGT  TGAAATCTCT  CCAATTTGCC  GTGAGGATTT  AGTCTGCTTG  780
781   CCTCCAAGGG  TTGCTGTTAG  CTTGGGGAAT  CTAGGTCCTC  TTGTGATCTG  CTCGAAAGTG  840
841   ACAAATAGCA  TTGCTTTGTT  AGATCCTTTC  ACCCTGAGAC  ACTGCTTCTT  GGATGCTGAC  900
901   CAGTACTGGA  GAACACCCTT  TAAGTCTCTT  CTCACTAGCA  GGCAACTTGT  AGAGTATATT  960
961   GTATTTGATG  TGGACTTTGT  TTCCCCTGAA  GTTAATATTG  GTGGGTCTAG  ATATGCTCTC  1020
1021  GCTGATGCCA  CTGTTGCTCG  CATGTCAGAT  TTTGGGAAGA  ATGATACCAT  GTTCAACATA  1080
1081  AAAACGCACC  TGGGGCATAT  TTTGAAACCT  GGTGATTATG  CTCTTGGTTA  TGATTTACAT  1140
1141  GGAGCTAACA  GTAATGACAT  GGAGCTTGAC  AAGTACAAAA  ATCTAGTCAT  TCCAGAAGCA  1200
1201  ATTTTGGTAA  AGAAAAGCTA  TGAAGAGAAG  CGCCAGAGGA  AACGAGGGAA  GCCTCGTTCC  1260
1261  TGGAAGCTAA  AGTCCCTCAA  TATGGAGGTT  GATGACACGA  GAGCTAGAGG  TGACCAAGAG  1320
1321  AAGATGAACT  CAGAGTATGA  ACAGTTCCTG  AGAGATCTGG  AAGAGAACCC  GGAGTTGAGG  1380
1381  TTCAATGTAT  CATTGTATCG  TAACAAAGAA  TATCAGCCTT  CTGAGATGGC  ATCTATGACT  1440
1441  GATGGGGAAG  ATATACCTTC  CATTCCTCTA  GAGGAGTTGC  TTGCTGATCT  TGAGATAAAT  1500
1501  GACGCCGAAG  ATGAGGACGA  AGGCATGGGG  GAATGA  1536

▼ KEYWORD

ID
Family
Complete proteome
Cytoplasm
Nucleus
Protein transport
Reference proteome
Transport

▼ GENE ONTOLOGY

ID
Classification
Description
Cellular Component
Cytoplasm
Cellular Component
Nucleus
Molecular Function
Ribosomal large subunit binding
Biological Process
Ribosomal large subunit export from nucleus

▼ KEGG


▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Mae-0255Manihot esculenta82.640.0 903
LLPS-Viv-1455Vitis vinifera80.350.0 875
LLPS-Prp-1683Prunus persica80.160.0 847
LLPS-Via-1955Vigna angularis79.020.0 820
LLPS-Phv-1755Phaseolus vulgaris78.820.0 820
LLPS-Hea-1437Helianthus annuus78.350.0 827
LLPS-Vir-1814Vigna radiata77.510.0 805
LLPS-Glm-0638Glycine max77.390.0 802
LLPS-Thc-1065Theobroma cacao76.910.0 819
LLPS-Sot-2252Solanum tuberosum76.760.0 833
LLPS-Cus-1649Cucumis sativus76.680.0 814
LLPS-Nia-0541Nicotiana attenuata76.370.0 825
LLPS-Sol-1385Solanum lycopersicum75.980.0 823
LLPS-Gor-0130Gossypium raimondii75.540.0 810
LLPS-Coc-0622Corchorus capsularis75.440.0 811
LLPS-Dac-0942Daucus carota75.390.0 847
LLPS-Mua-0272Musa acuminata73.681e-53 186
LLPS-Met-1106Medicago truncatula72.990.0 779
LLPS-Amt-0102Amborella trichopoda69.150.0 760
LLPS-Arl-0195Arabidopsis lyrata66.070.0 709
LLPS-Art-2849Arabidopsis thaliana65.870.0 711
LLPS-Brn-0908Brassica napus64.550.0 675
LLPS-Brr-2220Brassica rapa64.170.0 681
LLPS-Bro-2608Brassica oleracea63.620.0 663
LLPS-Sem-2402Selaginella moellendorffii62.480.0 680
LLPS-Php-1355Physcomitrella patens60.670.0 672
LLPS-Orbr-0162Oryza brachyantha58.646e-154 460
LLPS-Lep-0963Leersia perrieri57.060.0 582
LLPS-Sob-1616Sorghum bicolor56.940.0 573
LLPS-Tra-0575Triticum aestivum56.750.0 583
LLPS-Zem-1291Zea mays56.750.0 578
LLPS-Tru-0616Triticum urartu56.75e-169 495
LLPS-Sei-1442Setaria italica56.540.0 575
LLPS-Brd-0528Brachypodium distachyon56.260.0 575
LLPS-Orp-0419Oryza punctata56.180.0 572
LLPS-Orgl-0073Oryza glumaepatula55.980.0 572
LLPS-Orni-1093Oryza nivara55.980.0 570
LLPS-Orb-1021Oryza barthii55.980.0 570
LLPS-Ori-2206Oryza indica55.980.0 571
LLPS-Org-0110Oryza glaberrima55.980.0 570
LLPS-Orr-0648Oryza rufipogon55.980.0 571
LLPS-Ors-2308Oryza sativa55.980.0 571
LLPS-Ora-1164Ornithorhynchus anatinus53.624e-44 158
LLPS-Mod-1088Monodelphis domestica53.413e-108 339
LLPS-Osl-0992Ostreococcus lucimarinus48.77e-163 479
LLPS-Tag-0190Taeniopygia guttata47.21e-156 463
LLPS-Scf-3059Scleropages formosus46.864e-143 429
LLPS-Icp-1649Ictalurus punctatus46.865e-161 474
LLPS-Asm-1353Astyanax mexicanus46.793e-153 454
LLPS-Tar-0587Takifugu rubripes46.595e-159 469
LLPS-Gaga-1353Gallus gallus46.522e-156 462
LLPS-Orl-1485Oryzias latipes46.311e-146 437
LLPS-Leo-2692Lepisosteus oculatus46.232e-150 447
LLPS-Ten-0791Tetraodon nigroviridis46.222e-153 455
LLPS-Pof-1807Poecilia formosa46.185e-146 436
LLPS-Xim-3444Xiphophorus maculatus45.985e-150 446
LLPS-Anp-0182Anas platyrhynchos45.924e-152 451
LLPS-Scm-3072Scophthalmus maximus45.787e-160 471
LLPS-Fia-0254Ficedula albicollis45.748e-144 429
LLPS-Anc-0676Anolis carolinensis45.637e-157 464
LLPS-Pes-0036Pelodiscus sinensis45.635e-156 461
LLPS-Gaa-2125Gasterosteus aculeatus45.583e-155 459
LLPS-Dar-1984Danio rerio45.441e-137 414
LLPS-Orm-1188Oryza meridionalis45.275e-27 116
LLPS-Drm-1533Drosophila melanogaster45.243e-145 434
LLPS-Xet-1195Xenopus tropicalis45.249e-148 440
LLPS-Gas-0442Galdieria sulphuraria45.223e-143 428
LLPS-Meg-2794Meleagris gallopavo45.063e-153 454
LLPS-Crn-1409Cryptococcus neoformans45.042e-138 419
LLPS-Orn-1219Oreochromis niloticus44.784e-148 441
LLPS-Chr-0848Chlamydomonas reinhardtii44.732e-158 471
LLPS-Scc-1012Schizosaccharomyces cryophilus44.691e-139 419
LLPS-Cap-1343Cavia porcellus44.328e-135 405
LLPS-Lac-2859Latimeria chalumnae44.255e-131 397
LLPS-Otg-0572Otolemur garnettii44.222e-148 442
LLPS-Fec-2176Felis catus43.982e-148 443
LLPS-Pap-2643Pan paniscus43.943e-147 440
LLPS-Chc-0793Chondrus crispus43.93e-146 437
LLPS-Cii-0383Ciona intestinalis43.89e-145 432
LLPS-Fud-1778Fukomys damarensis43.793e-150 446
LLPS-Paa-1285Papio anubis43.747e-148 441
LLPS-Gog-4335Gorilla gorilla43.741e-147 441
LLPS-Maf-2708Macaca fascicularis43.741e-147 441
LLPS-Aon-2273Aotus nancymaae43.741e-148 444
LLPS-Cea-2946Cercocebus atys43.744e-148 442
LLPS-Mam-0949Macaca mulatta43.741e-147 441
LLPS-Hos-0847Homo sapiens43.741e-147 441
LLPS-Man-0195Macaca nemestrina43.741e-147 441
LLPS-Sus-0724Sus scrofa43.75e-148 442
LLPS-Poa-0790Pongo abelii43.651e-148 442
LLPS-Orc-1349Oryctolagus cuniculus43.657e-148 441
LLPS-Loa-1231Loxodonta africana43.632e-135 409
LLPS-Mup-0192Mustela putorius furo43.591e-149 445
LLPS-Bot-3654Bos taurus43.552e-144 432
LLPS-Caj-1494Callithrix jacchus43.558e-146 436
LLPS-Nol-0491Nomascus leucogenys43.548e-147 439
LLPS-Pat-4121Pan troglodytes43.542e-146 437
LLPS-Cas-0589Carlito syrichta43.482e-149 444
LLPS-Eqc-2685Equus caballus43.446e-148 441
LLPS-Aim-2338Ailuropoda melanoleuca43.319e-147 438
LLPS-Tum-0013Tuber melanosporum43.273e-139 419
LLPS-Cis-0192Ciona savignyi43.271e-124 379
LLPS-Chs-4393Chlorocebus sabaeus43.255e-148 441
LLPS-Ict-2069Ictidomys tridecemlineatus43.251e-148 442
LLPS-Dos-0219Dothistroma septosporum43.173e-134 406
LLPS-Asg-0840Ashbya gossypii43.163e-141 424
LLPS-Abg-0664Absidia glauca43.111e-134 407
LLPS-Urm-0721Ursus maritimus43.117e-148 441
LLPS-Caf-1330Canis familiaris43.061e-145 435
LLPS-Scs-0143Sclerotinia sclerotiorum43.035e-141 424
LLPS-Pug-0065Puccinia graminis42.991e-146 439
LLPS-Ova-0875Ovis aries42.944e-146 437
LLPS-Kop-1242Komagataella pastoris42.868e-135 407
LLPS-Zyt-0383Zymoseptoria tritici42.81e-138 418
LLPS-Scp-1420Schizosaccharomyces pombe42.82e-136 411
LLPS-Pyt-0087Pyrenophora teres42.86e-135 408
LLPS-Pytr-0527Pyrenophora triticirepentis42.84e-135 408
LLPS-Mel-0375Melampsora laricipopulina42.697e-141 424
LLPS-Ran-1923Rattus norvegicus42.631e-147 440
LLPS-Mal-1414Mandrillus leucophaeus42.631e-121 372
LLPS-Miv-0540Microbotryum violaceum42.593e-145 436
LLPS-Cym-0872Cyanidioschyzon merolae42.583e-138 419
LLPS-Yal-1271Yarrowia lipolytica42.483e-133 403
LLPS-Lem-0774Leptosphaeria maculans42.467e-133 402
LLPS-Mea-2130Mesocricetus auratus42.447e-148 441
LLPS-Mum-3612Mus musculus42.448e-148 440
LLPS-Sah-1012Sarcophilus harrisii42.388e-138 415
LLPS-Aso-0313Aspergillus oryzae42.192e-136 412
LLPS-Spr-0816Sporisorium reilianum42.095e-132 401
LLPS-Trr-1337Trichoderma reesei41.92e-133 404
LLPS-Cae-0177Caenorhabditis elegans41.864e-138 416
LLPS-Usm-0489Ustilago maydis41.831e-138 419
LLPS-Asn-1401Aspergillus nidulans41.772e-125 383
LLPS-Blg-0138Blumeria graminis41.723e-133 404
LLPS-Fuv-1301Fusarium verticillioides41.678e-135 407
LLPS-Ast-0633Aspergillus terreus41.675e-126 384
LLPS-Sac-0875Saccharomyces cerevisiae41.621e-132 402
LLPS-Trv-0779Trichoderma virens41.584e-133 403
LLPS-Fus-1009Fusarium solani41.589e-134 405
LLPS-Fuo-0630Fusarium oxysporum41.474e-134 405
LLPS-Myl-2694Myotis lucifugus41.272e-132 401
LLPS-Scj-0144Schizosaccharomyces japonicus41.056e-125 381
LLPS-Phn-1322Phaeosphaeria nodorum40.914e-126 385
LLPS-Ved-1244Verticillium dahliae40.761e-124 381
LLPS-Asfu-0403Aspergillus fumigatus40.612e-138 417
LLPS-Nef-1509Neosartorya fischeri40.619e-139 418
LLPS-Cog-0412Colletotrichum gloeosporioides40.541e-121 373
LLPS-Nec-1074Neurospora crassa40.434e-130 395
LLPS-Cogr-0613Colletotrichum graminicola40.376e-124 379
LLPS-Rhb-3162Rhinopithecus bieti40.282e-129 393
LLPS-Dio-1220Dipodomys ordii40.07e-127 386
LLPS-Coo-1208Colletotrichum orbiculare39.962e-123 378
LLPS-Mao-0721Magnaporthe oryzae39.962e-123 379
LLPS-Beb-0771Beauveria bassiana39.884e-127 388
LLPS-Put-1216Puccinia triticina39.811e-72 241
LLPS-Asc-1108Aspergillus clavatus39.57e-135 408
LLPS-Gag-0904Gaeumannomyces graminis39.183e-126 386
LLPS-Asni-0558Aspergillus niger39.071e-132 402
LLPS-Map-0977Magnaporthe poae38.482e-118 365