LLPS-Pot-0919
POPTR_005G114800
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Uncharacterized protein |
| Gene Name: | POPTR_005G114800 |
| Ensembl Gene: | POPTR_005G114800v3 |
| Ensembl Protein: | PNT36228 |
| Organism: | Populus trichocarpa |
| Taxa ID: | 3694 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| P-body, siRNA body | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | PNT36228 | PNT36228 |
| UniProt | U5GHI4, U5GHI4_POPTR | |
| GeneBank | CM009294 | PNT36228.1 |
| RefSeq | XM_006383053.1 | XP_006383115.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MTELNKSDKD DPFLVQYQPS DLNIASEFLS TWLPYLSRDL CHNCSKTLSD RIRSLSELQG 60 61 EDKSGDLPTL NINVESSNGN CGSDGNCNDN SVGSLKEDDD TNSLGSWKDG INGWSEPPVS 120 121 EASSSGVHSE WRSGMSWADM AQEDELVEEE EQEQQELNAR MVNVNDSTGG LRITKVVGKP 180 181 TTLPREQREY IRFMNVKRKK DFMCFEKING KLTNILQGLE LHTGIFSAAE QKRIVDYVYA 240 241 FQEKGKKGEL KERTYSAPQK WMRGKGRVTL QFGCCYNYTI DKNGNPPGIL QDEMVDPIPD 300 301 LFKVIIRRLV QWHVIPPTCV PDSCIVNIYE EWDCIPPHID SHDFVRPFCT VSFLSQCNIL 360 361 FGSNLKVVGA GDFDGPIAIP LPVGSVLVLN GNGADVAKHC VPSVPTKRIS ITFRKMDEAK 420 421 RPIGFVPEPD LQGIQPLSYE LDKTRKLNSP KSEPYVKRRP YGKEGQVEGR RYPEDGSQSE 480 481 SRYSSRNRWP AANQWRTKGN MGRADG 506 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGACCGAAC TCAATAAATC CGATAAAGAT GACCCGTTCC TCGTTCAATA TCAACCTTCC 60 61 GATCTTAATA TCGCATCGGA GTTTCTTTCC ACGTGGCTCC CATACCTCTC TCGGGATCTC 120 121 TGTCATAACT GCTCCAAAAC TCTCTCCGAT CGCATTCGCT CTCTCTCAGA ACTCCAAGGA 180 181 GAAGATAAGA GTGGGGATTT GCCGACTTTG AATATTAATG TGGAATCGTC AAACGGGAAT 240 241 TGTGGTTCTG ATGGTAATTG TAATGATAAT TCTGTGGGAA GTTTGAAAGA GGATGATGAC 300 301 ACGAATTCGT TAGGTAGTTG GAAAGACGGG ATAAATGGGT GGTCTGAGCC ACCTGTTTCA 360 361 GAGGCCTCCA GTAGTGGAGT TCATAGTGAA TGGCGCTCGG GGATGTCTTG GGCTGATATG 420 421 GCTCAGGAAG ATGAACTTGT GGAAGAGGAG GAACAAGAAC AGCAGGAGTT GAATGCACGG 480 481 ATGGTTAATG TGAATGATTC AACTGGTGGG TTGAGGATAA CAAAGGTTGT TGGGAAGCCT 540 541 ACTACATTAC CAAGGGAGCA AAGGGAATAC ATTCGGTTTA TGAATGTGAA GAGGAAGAAA 600 601 GACTTTATGT GTTTTGAGAA GATTAATGGA AAGCTTACTA ATATTCTCCA GGGCCTGGAG 660 661 CTTCACACGG GTATTTTCAG TGCTGCGGAG CAGAAGAGGA TTGTTGATTA TGTTTATGCA 720 721 TTTCAAGAGA AAGGGAAAAA GGGAGAGTTG AAAGAGCGCA CATATTCAGC TCCACAAAAG 780 781 TGGATGAGGG GCAAAGGGCG GGTGACCCTC CAGTTTGGTT GTTGTTACAA TTACACAATT 840 841 GATAAAAATG GTAATCCGCC AGGCATCCTC CAGGATGAAA TGGTAGATCC TATACCTGAC 900 901 CTTTTTAAAG TGATCATTAG AAGGCTGGTC CAATGGCATG TTATCCCTCC GACTTGTGTG 960 961 CCCGACAGTT GTATTGTTAA CATTTATGAA GAATGGGACT GTATACCACC TCATATTGAC 1020 1021 AGCCATGATT TTGTTCGACC TTTCTGTACT GTGTCTTTTC TTAGCCAGTG CAATATACTA 1080 1081 TTTGGATCAA ACTTAAAGGT TGTGGGTGCA GGTGACTTTG ATGGTCCAAT TGCTATCCCT 1140 1141 CTTCCTGTGG GATCTGTTCT TGTCTTAAAT GGAAATGGAG CCGATGTGGC TAAGCATTGT 1200 1201 GTGCCATCAG TTCCTACAAA GAGGATATCA ATCACATTTA GAAAAATGGA TGAAGCAAAA 1260 1261 CGTCCTATAG GTTTTGTTCC AGAACCTGAT TTGCAGGGAA TTCAGCCATT ATCATATGAA 1320 1321 CTGGATAAAA CAAGGAAGTT AAATTCTCCT AAATCAGAGC CTTATGTGAA AAGGCGGCCA 1380 1381 TATGGTAAAG AGGGTCAGGT GGAAGGGAGG AGATATCCTG AGGATGGTTC CCAATCAGAA 1440 1441 TCTCGTTACT CAAGTCGGAA TCGATGGCCA GCTGCAAATC AGTGGAGGAC TAAGGGGAAT 1500 1501 ATGGGCAGAG CTGATGGATG A 1521 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Orm-2093 | Oryza meridionalis | 72.9 | 2e-138 | 428 |
| LLPS-Sei-0876 | Setaria italica | 72.52 | 3e-137 | 417 |
| LLPS-Tru-0082 | Triticum urartu | 71.86 | 1e-121 | 372 |
| LLPS-Orni-0205 | Oryza nivara | 71.38 | 1e-139 | 423 |
| LLPS-Orp-1150 | Oryza punctata | 71.0 | 7e-140 | 424 |
| LLPS-Hov-1476 | Hordeum vulgare | 70.82 | 9e-132 | 403 |
| LLPS-Thc-1582 | Theobroma cacao | 66.34 | 0.0 | 660 |
| LLPS-Mae-1876 | Manihot esculenta | 65.88 | 0.0 | 634 |
| LLPS-Coc-1925 | Corchorus capsularis | 65.83 | 0.0 | 649 |
| LLPS-Gor-2012 | Gossypium raimondii | 65.57 | 0.0 | 626 |
| LLPS-Prp-2019 | Prunus persica | 65.31 | 0.0 | 598 |
| LLPS-Phv-2454 | Phaseolus vulgaris | 64.68 | 0.0 | 568 |
| LLPS-Viv-0000 | Vitis vinifera | 64.43 | 0.0 | 612 |
| LLPS-Glm-1324 | Glycine max | 63.52 | 0.0 | 555 |
| LLPS-Vir-1793 | Vigna radiata | 63.41 | 0.0 | 566 |
| LLPS-Met-1332 | Medicago truncatula | 63.39 | 0.0 | 552 |
| LLPS-Orgl-0679 | Oryza glumaepatula | 63.37 | 4e-115 | 360 |
| LLPS-Cus-1747 | Cucumis sativus | 63.24 | 0.0 | 583 |
| LLPS-Amt-0213 | Amborella trichopoda | 61.21 | 1e-142 | 424 |
| LLPS-Dac-1568 | Daucus carota | 61.12 | 0.0 | 538 |
| LLPS-Arl-2619 | Arabidopsis lyrata | 59.69 | 8e-170 | 496 |
| LLPS-Via-1730 | Vigna angularis | 59.64 | 0.0 | 556 |
| LLPS-Art-0009 | Arabidopsis thaliana | 59.56 | 1e-172 | 504 |
| LLPS-Bro-1983 | Brassica oleracea | 58.69 | 6e-168 | 490 |
| LLPS-Nia-1228 | Nicotiana attenuata | 57.96 | 0.0 | 575 |
| LLPS-Brn-0893 | Brassica napus | 57.55 | 5e-170 | 497 |
| LLPS-Brr-1045 | Brassica rapa | 56.79 | 2e-168 | 493 |
| LLPS-Sot-1724 | Solanum tuberosum | 56.55 | 0.0 | 541 |
| LLPS-Mua-2328 | Musa acuminata | 56.53 | 4e-163 | 484 |
| LLPS-Sol-1280 | Solanum lycopersicum | 56.34 | 0.0 | 535 |
| LLPS-Hea-1008 | Helianthus annuus | 55.89 | 0.0 | 527 |
| LLPS-Ori-0377 | Oryza indica | 54.67 | 1e-148 | 446 |
| LLPS-Orr-0161 | Oryza rufipogon | 54.38 | 2e-149 | 449 |
| LLPS-Ors-0226 | Oryza sativa | 54.16 | 8e-149 | 447 |
| LLPS-Gaga-0951 | Gallus gallus | 31.5 | 2e-14 | 79.0 |
| LLPS-Tag-2736 | Taeniopygia guttata | 31.5 | 2e-14 | 79.3 |
| LLPS-Fia-3183 | Ficedula albicollis | 31.5 | 2e-14 | 78.6 |
| LLPS-Anc-3761 | Anolis carolinensis | 31.0 | 3e-13 | 75.5 |
| LLPS-Anp-2458 | Anas platyrhynchos | 30.88 | 3e-13 | 75.1 |
| LLPS-Pes-3228 | Pelodiscus sinensis | 30.81 | 1e-13 | 76.6 |
| LLPS-Tut-0846 | Tursiops truncatus | 30.0 | 1e-12 | 73.9 |
| LLPS-Sah-0463 | Sarcophilus harrisii | 30.0 | 2e-12 | 73.2 |
| LLPS-Orc-3538 | Oryctolagus cuniculus | 30.0 | 2e-12 | 73.2 |
| LLPS-Scf-0651 | Scleropages formosus | 29.85 | 4e-14 | 77.4 |
| LLPS-Nol-2980 | Nomascus leucogenys | 29.5 | 2e-12 | 73.2 |
| LLPS-Tar-2025 | Takifugu rubripes | 28.71 | 4e-11 | 68.9 |