LLPS-Pat-2249
LOC461829
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | SMN1 isoform 1 |
| Gene Name: | LOC461829, SMN1, CK820_G0034203 |
| Ensembl Gene: | ENSPTRG00000016955.5 |
| Ensembl Protein: | ENSPTRP00000083515.1 |
| Organism: | Pan troglodytes |
| Taxa ID: | 9598 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Cajal body, Nuclear speckle, Perinucleolar compartment, Sam68 nuclear body, Stress granule | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | ENSPTRT00000091690.1 | ENSPTRP00000083515.1 |
| Ensembl | ENSPTRT00000101315.1 | ENSPTRP00000075974.1 |
| Ensembl | ENSPTRT00000084001.1 | ENSPTRP00000090139.1 |
| Ensembl | ENSPTRT00000090537.1 | ENSPTRP00000064572.1 |
| Ensembl | ENSPTRT00000031451.5 | ENSPTRP00000029048.5 |
| Ensembl | ENSPTRT00000088111.1 | ENSPTRP00000068113.1 |
| UniProt | A0A2I3TMK9, A0A2I3TMK9_PANTR, A0A2J8L0U2 | |
| GeneBank | GABE01006348, AACZ04069280, NBAG03000320, GABC01004110, GABF01006150 | , JAA38391.1, JAA07228.1, PNI40881.1, PNI40887.1, JAA15995.1 |
| RefSeq | XM_001156488.4 | XP_001156488.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MAMSSGGSGG GVPEQEDSVL FRRGTGQSDD SDIWDDTALI KAYDKAVASF KHALKNGDIC 60 61 ETSGKPKTTP KRKPAKKNKS QKKNTAASLQ QWKVGDKCSA IWSEDGCIYP ATIASIDFKR 120 121 ETCVVVYTGY GNREEQNLSD LLSPICEVAN NIEQNAQENE NESQVSTDES ENSRSPGNKS 180 181 DNIKPKSAPW NSFLPPPPPM PGPRLGPGKP GLKFNGPPPP LPPPPPPPPH LLSCWLPPFP 240 241 SGPPIIPPPP PICPDSLDDA DALGSMLISW YMSGYHTGYY MTGFHCVSQD GLNLLTP 297 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGCGATGA GCAGCGGCGG CAGTGGTGGC GGCGTCCCGG AGCAGGAGGA TTCCGTGCTG 60 61 TTCCGGCGCG GCACAGGCCA GAGCGATGAT TCTGACATTT GGGATGATAC AGCATTGATA 120 121 AAAGCATATG ATAAAGCTGT GGCTTCATTT AAGCATGCTC TAAAGAATGG TGACATTTGT 180 181 GAAACTTCAG GTAAACCAAA AACCACACCT AAAAGAAAAC CTGCTAAGAA GAATAAAAGC 240 241 CAAAAGAAGA ATACTGCAGC TTCCTTACAA CAGTGGAAAG TTGGGGACAA ATGTTCTGCC 300 301 ATTTGGTCAG AAGACGGTTG CATTTACCCA GCTACCATTG CTTCAATTGA TTTCAAGAGA 360 361 GAAACCTGTG TTGTGGTTTA CACTGGATAT GGAAATAGAG AGGAGCAAAA TCTGTCCGAT 420 421 CTACTTTCCC CAATCTGTGA AGTAGCTAAT AATATAGAAC AGAATGCTCA AGAGAATGAA 480 481 AATGAAAGCC AAGTTTCAAC AGATGAAAGT GAGAACTCCA GGTCTCCTGG AAATAAATCA 540 541 GATAACATCA AGCCCAAATC TGCTCCATGG AACTCTTTTC TCCCTCCACC ACCCCCCATG 600 601 CCAGGGCCAA GACTGGGACC AGGAAAGCCA GGTCTAAAAT TCAATGGCCC ACCACCGCCA 660 661 CTGCCACCAC CACCACCACC ACCACCCCAC TTACTATCAT GCTGGCTGCC TCCATTTCCT 720 721 TCTGGACCAC CAATAATTCC CCCACCACCT CCCATATGTC CAGATTCTCT TGATGATGCT 780 781 GATGCTTTGG GAAGTATGTT AATTTCATGG TACATGAGTG GCTATCATAC TGGCTATTAT 840 841 ATGCAAGCTC TGCCT 855 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Hos-0485 | Homo sapiens | 100.0 | 9e-92 | 281 |
| LLPS-Pap-3517 | Pan paniscus | 100.0 | 1e-21 | 96.7 |
| LLPS-Ict-1817 | Ictidomys tridecemlineatus | 100.0 | 8e-08 | 56.6 |
| LLPS-Gog-0952 | Gorilla gorilla | 100.0 | 4e-22 | 97.4 |
| LLPS-Ere-0076 | Erinaceus europaeus | 100.0 | 7e-10 | 62.4 |
| LLPS-Nol-2890 | Nomascus leucogenys | 98.45 | 6e-90 | 276 |
| LLPS-Poa-1891 | Pongo abelii | 98.21 | 4e-78 | 246 |
| LLPS-Man-0825 | Macaca nemestrina | 96.89 | 2e-87 | 270 |
| LLPS-Tut-2394 | Tursiops truncatus | 96.67 | 5e-10 | 63.2 |
| LLPS-Rhb-1342 | Rhinopithecus bieti | 96.37 | 6e-86 | 266 |
| LLPS-Chs-0484 | Chlorocebus sabaeus | 96.37 | 2e-86 | 268 |
| LLPS-Mal-2532 | Mandrillus leucophaeus | 96.37 | 7e-85 | 263 |
| LLPS-Paa-0669 | Papio anubis | 96.37 | 2e-87 | 270 |
| LLPS-Otg-2085 | Otolemur garnettii | 96.3 | 1e-08 | 59.3 |
| LLPS-Maf-3887 | Macaca fascicularis | 96.18 | 6e-66 | 216 |
| LLPS-Cea-4124 | Cercocebus atys | 95.85 | 2e-86 | 268 |
| LLPS-Caj-0153 | Callithrix jacchus | 94.82 | 1e-85 | 266 |
| LLPS-Mup-3631 | Mustela putorius furo | 92.86 | 4e-09 | 60.5 |
| LLPS-Mea-1185 | Mesocricetus auratus | 92.59 | 3e-08 | 57.8 |
| LLPS-Aon-0019 | Aotus nancymaae | 92.23 | 2e-83 | 259 |
| LLPS-Mam-0214 | Macaca mulatta | 91.19 | 2e-78 | 247 |
| LLPS-Urm-1004 | Ursus maritimus | 88.52 | 3e-78 | 250 |
| LLPS-Cas-0024 | Carlito syrichta | 88.46 | 6e-80 | 251 |
| LLPS-Fec-0229 | Felis catus | 87.98 | 3e-77 | 244 |
| LLPS-Mod-0917 | Monodelphis domestica | 87.5 | 2e-06 | 52.4 |
| LLPS-Dar-1484 | Danio rerio | 87.5 | 8e-06 | 50.4 |
| LLPS-Sah-0025 | Sarcophilus harrisii | 87.5 | 2e-06 | 52.4 |
| LLPS-Caf-0389 | Canis familiaris | 87.43 | 6e-79 | 248 |
| LLPS-Aim-0369 | Ailuropoda melanoleuca | 87.43 | 9e-78 | 246 |
| LLPS-Sus-1869 | Sus scrofa | 87.11 | 2e-76 | 242 |
| LLPS-Myl-3312 | Myotis lucifugus | 86.89 | 4e-74 | 236 |
| LLPS-Eqc-2070 | Equus caballus | 84.62 | 2e-74 | 236 |
| LLPS-Orc-2571 | Oryctolagus cuniculus | 84.02 | 3e-74 | 236 |
| LLPS-Pes-0290 | Pelodiscus sinensis | 83.33 | 4e-06 | 51.6 |
| LLPS-Loa-3573 | Loxodonta africana | 82.89 | 2e-74 | 237 |
| LLPS-Anc-3538 | Anolis carolinensis | 81.48 | 9e-07 | 53.5 |
| LLPS-Icp-1479 | Ictalurus punctatus | 81.48 | 3e-06 | 52.0 |
| LLPS-Ova-0134 | Ovis aries | 81.08 | 3e-10 | 63.5 |
| LLPS-Cap-2043 | Cavia porcellus | 80.41 | 1e-64 | 211 |
| LLPS-Bot-0998 | Bos taurus | 80.22 | 1e-68 | 223 |
| LLPS-Fud-3452 | Fukomys damarensis | 78.38 | 3e-09 | 61.2 |
| LLPS-Dio-2420 | Dipodomys ordii | 78.38 | 6e-10 | 62.8 |
| LLPS-Fia-0221 | Ficedula albicollis | 77.78 | 2e-06 | 52.4 |
| LLPS-Tag-0168 | Taeniopygia guttata | 77.78 | 3e-06 | 52.0 |
| LLPS-Mum-0797 | Mus musculus | 76.67 | 3e-69 | 223 |
| LLPS-Ran-2546 | Rattus norvegicus | 75.68 | 1e-08 | 59.3 |
| LLPS-Xet-3829 | Xenopus tropicalis | 74.07 | 6e-06 | 50.8 |
| LLPS-Orn-0518 | Oreochromis niloticus | 68.99 | 2e-41 | 150 |
| LLPS-Pof-1673 | Poecilia formosa | 67.72 | 3e-39 | 145 |
| LLPS-Gaa-0563 | Gasterosteus aculeatus | 67.72 | 3e-38 | 142 |
| LLPS-Xim-1477 | Xiphophorus maculatus | 67.44 | 5e-40 | 147 |
| LLPS-Orl-0840 | Oryzias latipes | 66.93 | 4e-39 | 144 |
| LLPS-Ora-0303 | Ornithorhynchus anatinus | 65.73 | 8e-52 | 177 |
| LLPS-Scf-0923 | Scleropages formosus | 64.8 | 9e-35 | 132 |
| LLPS-Tar-2310 | Takifugu rubripes | 64.62 | 9e-40 | 146 |
| LLPS-Leo-2903 | Lepisosteus oculatus | 64.57 | 2e-35 | 134 |
| LLPS-Asm-1652 | Astyanax mexicanus | 63.56 | 1e-28 | 117 |
| LLPS-Scm-3047 | Scophthalmus maximus | 61.42 | 2e-34 | 132 |
| LLPS-Gaga-0804 | Gallus gallus | 60.8 | 1e-47 | 166 |
| LLPS-Anp-2311 | Anas platyrhynchos | 56.73 | 6e-22 | 95.9 |
| LLPS-Lac-1863 | Latimeria chalumnae | 48.78 | 2e-06 | 52.0 |
| LLPS-Ten-0863 | Tetraodon nigroviridis | 48.0 | 1e-07 | 55.8 |