LLPS-Ors-0310
NFYC4
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Nuclear transcription factor Y subunit C-4 |
| Gene Name: | NFYC4, HAP5B, Os06g0667100, LOC_Os06g45640, OsJ_22293, P0637D03.35 |
| Ensembl Gene: | Os06g0667100 |
| Ensembl Protein: | Os06t0667100-01 |
| Organism: | Oryza sativa |
| Taxa ID: | 39947 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | Os06t0667100-01 | Os06t0667100-01 |
| UniProt | Q655V5, NFYC4_ORYSJ | |
| GeneBank | AP008212, AK066630, AP014962, AP003633, AB288042, CM000143 | BAF64450.1, EAZ37943.1, BAS99044.1, BAF20226.1, BAG90057.1, BAD45412.1 |
| RefSeq | XM_015788859.1 | XP_015644345.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MEPSSQPQPA IGVVAGGSQV YPAYRPAATV PTAPAVIPAG SQPAPSFPAN PDQLSAQHQL 60 61 VYQQAQQFHQ QLQQQQQRQL QQFWAERLVD IEQTTDFKNH SLPLARIKKI MKADEDVRMI 120 121 SAEAPVIFAK ACEIFILELT LRSWMHTEEN KRRTLQKNDI AAAITRTDMY DFLVDIVPRD 180 181 DLKEEGVGLP RAGLPPLGVP ADSYPYGYYV PQQQVPGAGI AYGGQQGHPG YLWQDPQEQQ 240 241 EEPPAEQQSD 250 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGAGCCAT CATCACAACC TCAGCCGGCA ATTGGTGTTG TTGCTGGTGG ATCACAAGTG 60 61 TACCCTGCAT ACCGGCCTGC AGCAACAGTG CCTACAGCTC CTGCTGTCAT TCCTGCCGGT 120 121 TCACAGCCAG CACCGTCGTT CCCTGCCAAC CCTGATCAAC TGAGTGCTCA GCACCAGCTC 180 181 GTCTATCAGC AAGCCCAGCA ATTTCACCAG CAGCTTCAGC AGCAGCAACA GCGTCAACTC 240 241 CAGCAGTTTT GGGCTGAACG TCTGGTCGAT ATTGAACAAA CTACTGACTT CAAGAACCAC 300 301 AGCTTGCCAC TTGCTAGGAT AAAGAAGATC ATGAAGGCAG ATGAGGACGT TCGCATGATC 360 361 TCCGCAGAGG CTCCTGTGAT CTTTGCGAAA GCATGTGAGA TATTCATACT GGAGCTGACC 420 421 CTGAGATCAT GGATGCACAC GGAGGAGAAC AAGCGCCGTA CCTTGCAGAA GAATGACATA 480 481 GCAGCTGCCA TCACCAGGAC GGATATGTAC GATTTCTTGG TAGATATAGT TCCCAGGGAT 540 541 GACTTGAAGG AGGAGGGAGT TGGGCTCCCT AGGGCTGGAT TGCCGCCCTT GGGTGTCCCT 600 601 GCTGACTCAT ATCCGTATGG CTACTATGTG CCACAGCAGC AGGTCCCAGG TGCAGGAATA 660 661 GCGTATGGTG GTCAGCAAGG TCATCCGGGG TATCTGTGGC AGGATCCTCA GGAACAGCAG 720 721 GAAGAGCCTC CTGCAGAGCA GCAAAGTGAT TAA 753 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Cytoplasm | |
Cellular Component | Nucleus | |
Molecular Function | DNA binding | |
Molecular Function | DNA-binding transcription factor activity | |
Molecular Function | Protein heterodimerization activity | |
Biological Process | Flower development | |
Biological Process | Negative regulation of long-day photoperiodism, flowering |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Orr-1814 | Oryza rufipogon | 100.0 | 7e-114 | 334 |
| LLPS-Ori-1562 | Oryza indica | 100.0 | 7e-114 | 334 |
| LLPS-Org-0714 | Oryza glaberrima | 99.14 | 4e-113 | 332 |
| LLPS-Orni-0948 | Oryza nivara | 99.14 | 4e-113 | 332 |
| LLPS-Orm-1580 | Oryza meridionalis | 98.71 | 2e-110 | 330 |
| LLPS-Orb-2240 | Oryza barthii | 98.71 | 2e-113 | 333 |
| LLPS-Orp-0295 | Oryza punctata | 97.0 | 3e-109 | 322 |
| LLPS-Lep-0395 | Leersia perrieri | 94.87 | 3e-107 | 317 |
| LLPS-Orbr-1582 | Oryza brachyantha | 94.85 | 2e-107 | 318 |
| LLPS-Cus-1633 | Cucumis sativus | 83.33 | 3e-67 | 216 |
| LLPS-Amt-1676 | Amborella trichopoda | 83.19 | 1e-62 | 204 |
| LLPS-Prp-0895 | Prunus persica | 82.5 | 1e-66 | 214 |
| LLPS-Thc-0495 | Theobroma cacao | 82.5 | 2e-66 | 214 |
| LLPS-Bro-2937 | Brassica oleracea | 82.08 | 1e-57 | 191 |
| LLPS-Brn-2330 | Brassica napus | 82.08 | 5e-57 | 191 |
| LLPS-Coc-2355 | Corchorus capsularis | 81.67 | 3e-66 | 213 |
| LLPS-Php-0599 | Physcomitrella patens | 81.58 | 2e-61 | 202 |
| LLPS-Vir-2034 | Vigna radiata | 81.55 | 1e-49 | 168 |
| LLPS-Brr-1188 | Brassica rapa | 80.87 | 6e-64 | 204 |
| LLPS-Pot-0346 | Populus trichocarpa | 80.83 | 5e-66 | 213 |
| LLPS-Art-1359 | Arabidopsis thaliana | 80.53 | 2e-62 | 201 |
| LLPS-Hea-2100 | Helianthus annuus | 80.33 | 3e-63 | 204 |
| LLPS-Viv-2097 | Vitis vinifera | 80.17 | 1e-66 | 214 |
| LLPS-Phv-2478 | Phaseolus vulgaris | 80.0 | 5e-65 | 210 |
| LLPS-Via-1156 | Vigna angularis | 80.0 | 4e-65 | 210 |
| LLPS-Nia-1169 | Nicotiana attenuata | 79.82 | 4e-59 | 194 |
| LLPS-Sol-1425 | Solanum lycopersicum | 79.82 | 5e-59 | 193 |
| LLPS-Sot-0549 | Solanum tuberosum | 79.82 | 4e-59 | 194 |
| LLPS-Gor-2719 | Gossypium raimondii | 79.17 | 4e-64 | 207 |
| LLPS-Glm-0781 | Glycine max | 79.17 | 2e-64 | 208 |
| LLPS-Arl-1149 | Arabidopsis lyrata | 78.95 | 3e-59 | 194 |
| LLPS-Sob-0350 | Sorghum bicolor | 78.3 | 3e-86 | 264 |
| LLPS-Tru-1037 | Triticum urartu | 78.24 | 3e-77 | 244 |
| LLPS-Met-0844 | Medicago truncatula | 77.87 | 5e-59 | 196 |
| LLPS-Sei-2033 | Setaria italica | 77.56 | 8e-75 | 234 |
| LLPS-Dac-1891 | Daucus carota | 77.05 | 1e-59 | 196 |
| LLPS-Hov-0859 | Hordeum vulgare | 76.89 | 5e-79 | 246 |
| LLPS-Sem-1936 | Selaginella moellendorffii | 76.58 | 9e-58 | 186 |
| LLPS-Tra-2187 | Triticum aestivum | 76.27 | 5e-90 | 273 |
| LLPS-Mae-0783 | Manihot esculenta | 73.55 | 3e-57 | 189 |
| LLPS-Zem-2279 | Zea mays | 73.42 | 1e-76 | 239 |
| LLPS-Brd-1485 | Brachypodium distachyon | 70.46 | 2e-79 | 246 |
| LLPS-Gog-3312 | Gorilla gorilla | 69.51 | 2e-30 | 120 |
| LLPS-Man-3976 | Macaca nemestrina | 63.51 | 4e-24 | 102 |
| LLPS-Cea-4852 | Cercocebus atys | 62.34 | 3e-25 | 105 |
| LLPS-Paa-3397 | Papio anubis | 62.34 | 3e-25 | 105 |
| LLPS-Maf-4405 | Macaca fascicularis | 62.16 | 6e-24 | 102 |
| LLPS-Dos-1514 | Dothistroma septosporum | 62.0 | 1e-39 | 145 |
| LLPS-Anc-3877 | Anolis carolinensis | 61.9 | 4e-35 | 133 |
| LLPS-Mua-1494 | Musa acuminata | 61.76 | 4e-64 | 209 |
| LLPS-Pat-0225 | Pan troglodytes | 58.42 | 6e-30 | 119 |
| LLPS-Mam-0539 | Macaca mulatta | 58.11 | 1e-19 | 89.7 |
| LLPS-Pap-4148 | Pan paniscus | 57.43 | 1e-27 | 112 |
| LLPS-Ict-2615 | Ictidomys tridecemlineatus | 40.24 | 6e-12 | 65.1 |
| LLPS-Orgl-1710 | Oryza glumaepatula | 39.74 | 8e-10 | 61.6 |
| LLPS-Cap-4649 | Cavia porcellus | 39.24 | 7e-11 | 62.0 |
| LLPS-Mea-1782 | Mesocricetus auratus | 39.02 | 4e-10 | 60.1 |
| LLPS-Ran-3395 | Rattus norvegicus | 39.02 | 2e-10 | 60.8 |
| LLPS-Mel-0779 | Melampsora laricipopulina | 38.67 | 6e-09 | 56.2 |
| LLPS-Pug-0036 | Puccinia graminis | 38.46 | 4e-10 | 60.1 |
| LLPS-Nol-3128 | Nomascus leucogenys | 37.97 | 2e-10 | 60.8 |
| LLPS-Fud-0953 | Fukomys damarensis | 37.97 | 2e-10 | 61.2 |
| LLPS-Hos-4866 | Homo sapiens | 37.8 | 1e-10 | 61.6 |
| LLPS-Fec-2811 | Felis catus | 37.8 | 9e-11 | 62.0 |
| LLPS-Otg-4217 | Otolemur garnettii | 37.8 | 3e-10 | 60.5 |
| LLPS-Poa-1454 | Pongo abelii | 37.8 | 3e-10 | 60.5 |
| LLPS-Chs-1262 | Chlorocebus sabaeus | 37.8 | 3e-10 | 60.5 |
| LLPS-Aon-3691 | Aotus nancymaae | 37.8 | 2e-10 | 61.2 |
| LLPS-Dio-3308 | Dipodomys ordii | 37.8 | 1e-10 | 61.2 |
| LLPS-Sus-0776 | Sus scrofa | 36.59 | 2e-10 | 60.8 |
| LLPS-Tut-0017 | Tursiops truncatus | 36.59 | 8e-10 | 59.3 |
| LLPS-Bot-4655 | Bos taurus | 36.59 | 5e-10 | 59.7 |
| LLPS-Aim-2903 | Ailuropoda melanoleuca | 36.59 | 2e-10 | 60.8 |
| LLPS-Myl-3447 | Myotis lucifugus | 36.59 | 4e-10 | 60.1 |
| LLPS-Ova-0209 | Ovis aries | 36.59 | 2e-09 | 58.5 |
| LLPS-Lem-0946 | Leptosphaeria maculans | 36.14 | 8e-11 | 62.8 |
| LLPS-Icp-3504 | Ictalurus punctatus | 35.96 | 1e-11 | 63.9 |
| LLPS-Caj-0089 | Callithrix jacchus | 35.9 | 2e-08 | 55.8 |
| LLPS-Scp-0257 | Schizosaccharomyces pombe | 35.9 | 5e-09 | 58.5 |
| LLPS-Scj-1550 | Schizosaccharomyces japonicus | 35.9 | 2e-09 | 58.5 |
| LLPS-Leo-0551 | Lepisosteus oculatus | 35.87 | 8e-10 | 58.9 |
| LLPS-Pytr-0193 | Pyrenophora triticirepentis | 35.71 | 9e-12 | 65.1 |
| LLPS-Pyt-0704 | Pyrenophora teres | 35.71 | 1e-11 | 65.1 |
| LLPS-Ved-0288 | Verticillium dahliae | 35.56 | 3e-09 | 60.8 |
| LLPS-Pof-3688 | Poecilia formosa | 35.44 | 4e-10 | 60.1 |
| LLPS-Xim-3486 | Xiphophorus maculatus | 35.44 | 4e-10 | 60.1 |
| LLPS-Lac-0147 | Latimeria chalumnae | 35.37 | 2e-10 | 61.2 |
| LLPS-Ten-3676 | Tetraodon nigroviridis | 35.37 | 1e-10 | 61.2 |
| LLPS-Tar-3977 | Takifugu rubripes | 35.37 | 3e-10 | 60.5 |
| LLPS-Mum-0631 | Mus musculus | 35.35 | 3e-10 | 60.1 |
| LLPS-Asm-4003 | Astyanax mexicanus | 35.23 | 4e-10 | 60.1 |
| LLPS-Mod-2372 | Monodelphis domestica | 35.16 | 9e-11 | 62.0 |
| LLPS-Abg-0498 | Absidia glauca | 35.06 | 2e-07 | 52.4 |
| LLPS-Cog-1128 | Colletotrichum gloeosporioides | 34.67 | 8e-08 | 53.9 |
| LLPS-Gaa-1734 | Gasterosteus aculeatus | 34.57 | 6e-08 | 55.5 |
| LLPS-Xet-1825 | Xenopus tropicalis | 34.25 | 3e-07 | 51.6 |
| LLPS-Loa-3124 | Loxodonta africana | 34.18 | 3e-09 | 58.9 |
| LLPS-Orn-1382 | Oreochromis niloticus | 34.18 | 6e-09 | 58.5 |
| LLPS-Rhb-0127 | Rhinopithecus bieti | 34.18 | 4e-09 | 58.5 |
| LLPS-Eqc-4060 | Equus caballus | 34.18 | 9e-09 | 58.5 |
| LLPS-Gaga-2977 | Gallus gallus | 34.18 | 3e-09 | 58.9 |
| LLPS-Orl-1027 | Oryzias latipes | 34.18 | 7e-09 | 58.5 |
| LLPS-Scf-2807 | Scleropages formosus | 34.18 | 2e-09 | 59.7 |
| LLPS-Meg-0152 | Meleagris gallopavo | 34.15 | 2e-08 | 55.5 |
| LLPS-Fia-3701 | Ficedula albicollis | 34.15 | 7e-08 | 53.9 |
| LLPS-Tag-1051 | Taeniopygia guttata | 34.15 | 3e-08 | 54.7 |
| LLPS-Scm-3461 | Scophthalmus maximus | 33.71 | 9e-09 | 58.2 |
| LLPS-Cii-1812 | Ciona intestinalis | 33.68 | 1e-09 | 61.6 |
| LLPS-Orc-3168 | Oryctolagus cuniculus | 33.33 | 2e-07 | 53.9 |
| LLPS-Usm-1261 | Ustilago maydis | 33.33 | 7e-08 | 53.9 |
| LLPS-Spr-0220 | Sporisorium reilianum | 33.33 | 4e-08 | 54.7 |
| LLPS-Fus-0343 | Fusarium solani | 32.94 | 1e-08 | 58.5 |
| LLPS-Fuo-1385 | Fusarium oxysporum | 32.94 | 2e-08 | 57.8 |
| LLPS-Fuv-0321 | Fusarium verticillioides | 32.94 | 2e-08 | 57.8 |
| LLPS-Ast-1452 | Aspergillus terreus | 32.89 | 2e-09 | 60.5 |
| LLPS-Tum-0653 | Tuber melanosporum | 32.89 | 6e-09 | 59.7 |
| LLPS-Dar-2377 | Danio rerio | 32.58 | 1e-09 | 58.9 |
| LLPS-Asc-0947 | Aspergillus clavatus | 32.18 | 5e-09 | 58.9 |
| LLPS-Asn-0347 | Aspergillus nidulans | 32.18 | 6e-09 | 58.9 |
| LLPS-Cas-3265 | Carlito syrichta | 32.14 | 4e-07 | 51.6 |
| LLPS-Phn-0639 | Phaeosphaeria nodorum | 32.0 | 2e-10 | 61.6 |
| LLPS-Cogr-1364 | Colletotrichum graminicola | 31.87 | 2e-07 | 55.5 |
| LLPS-Beb-0992 | Beauveria bassiana | 31.76 | 2e-08 | 57.8 |
| LLPS-Aso-1020 | Aspergillus oryzae | 31.58 | 8e-09 | 58.5 |
| LLPS-Asf-1358 | Aspergillus flavus | 31.58 | 8e-09 | 58.5 |
| LLPS-Nef-0876 | Neosartorya fischeri | 31.46 | 5e-09 | 57.8 |
| LLPS-Asni-1266 | Aspergillus niger | 31.46 | 4e-09 | 60.1 |
| LLPS-Nec-0097 | Neurospora crassa | 31.4 | 3e-07 | 55.1 |
| LLPS-Asfu-0381 | Aspergillus fumigatus | 31.11 | 5e-09 | 58.9 |
| LLPS-Cis-0930 | Ciona savignyi | 30.85 | 3e-08 | 57.4 |
| LLPS-Yal-1362 | Yarrowia lipolytica | 30.77 | 1e-07 | 53.1 |
| LLPS-Gag-1545 | Gaeumannomyces graminis | 30.77 | 4e-07 | 54.3 |
| LLPS-Kop-1331 | Komagataella pastoris | 28.42 | 2e-07 | 52.0 |