LLPS-Nia-1367
NUP88
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Nuclear pore complex protein nup88 |
| Gene Name: | NUP88, A4A49_03711 |
| Ensembl Gene: | A4A49_03711 |
| Ensembl Protein: | OIT34848 |
| Organism: | Nicotiana attenuata |
| Taxa ID: | 49451 |
| LLPS Type: | Client |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | OIT34848 | OIT34848 |
| UniProt | A0A314KZH2, A0A314KZH2_NICAT | |
| GeneBank | MJEQ01000646 | OIT34848.1 |
| RefSeq | XM_019411178.1, XM_019411179.1 | XP_019266723.1, XP_019266724.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MRYNFDLSEP RDADDGGRQS AMPTSASTPK KELEWLPLQN HPVFSSPNRD GAAHSSNFTM 60 61 PKNLLAWDGA SRLYFWDSYK SCLHRLSVRL GEPDPTSVLA ASPSKVLQAD MQLDFEVQRI 120 121 SINRNGSALF LVGLDGLYVM YLYGRTSTKE NTVICRTVSV GSEIYFDKNN SIRTLQVCWH 180 181 PYSDTHLGIL SSDSVFRVYD LSSALGQPEQ EYYLQPVEPG SSHNATSICP VDFSFGGDHL 240 241 WDRFSVFILF SDGSVYILCP VVPFGSVYKW ESILELYSDA HVFGLKSSNS KAVKNSNLAI 300 301 SWLEATFPEL ARKEVHAENA SVLRAQPYAL FDASISLQGP LRKVSHSVEE DSVHPPVCEG 360 361 RAVSFLYDLV SKDSIVVTAW SGGQLQIDAL ADEVQPVWKV GSPPRVCLDS TDSIVGLAMI 420 421 CESLSSDTSI LKLDLPPDHT LWLGHSPPLL RLAIVDLALP RRSGSIISMF VDPLISERIY 480 481 CLHDGGIDSV VLHFFPFTNQ SSGKEDMMRS PSVHPVLSTF QGEASSASPL CGFLALSDSF 540 541 GDSWIVGLTP SCECIVLEME TWNTLVPPII DKVDKLIDSE GPKDTDIPTI ISKELLTGPR 600 601 VVLLPPSSPH LRSVAADSIE GRSTLHQYFK LFHENYVEYA HKVYFELQHH APHVKKIIDD 660 661 QHSRLHKAQQ KILEVERKQE KIEDRIEHAV QFHSKLEERL QSLRHLPAAH KRSLSKAERE 720 721 FKSELDRYRG VELDALRFSI EAVNARLKRF THSPQASRSN EQRQLSVRRK SHVQENEMSL 780 781 LKASLEKLSL VNSENAKKVK VVESALKCRE IGTS 814 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGAGATACA ATTTCGACTT GTCGGAGCCC CGTGACGCCG ACGACGGTGG CCGTCAATCA 60 61 GCAATGCCAA CTTCAGCTTC AACACCCAAA AAAGAACTGG AATGGCTACC CTTACAAAAC 120 121 CACCCAGTCT TTTCTTCTCC CAACAGGGAT GGCGCCGCCC ATTCCTCCAA CTTCACAATG 180 181 CCTAAAAACC TTTTGGCGTG GGACGGAGCT TCTCGTCTCT ACTTTTGGGA CTCCTACAAA 240 241 AGTTGTCTGC ATCGGCTCTC TGTTCGGTTG GGCGAACCGG ACCCTACTTC CGTCCTTGCC 300 301 GCTTCTCCTT CTAAGGTACT GCAAGCTGAT ATGCAATTGG ATTTTGAGGT TCAGCGAATT 360 361 TCCATTAATA GAAATGGATC AGCACTTTTC CTAGTTGGCT TGGATGGTTT ATACGTCATG 420 421 TATCTCTATG GAAGGACTTC GACGAAAGAA AATACAGTTA TATGCCGGAC AGTTTCAGTT 480 481 GGTTCAGAGA TTTACTTTGA TAAAAACAAC TCAATACGCA CGTTGCAGGT TTGTTGGCAC 540 541 CCTTACAGTG ACACCCATCT GGGAATCCTC TCTTCTGATT CCGTTTTCAG GGTTTATGAT 600 601 CTGTCGTCGG CCCTTGGTCA GCCAGAACAG GAGTATTATT TGCAGCCTGT GGAGCCTGGC 660 661 AGTTCGCACA ATGCCACATC AATCTGCCCC GTCGATTTTT CTTTTGGGGG GGATCATTTG 720 721 TGGGACAGGT TCAGTGTTTT TATCTTGTTT AGTGATGGCT CAGTTTACAT CCTATGTCCT 780 781 GTTGTTCCCT TTGGAAGTGT GTACAAATGG GAATCTATAC TGGAGTTATA TAGTGATGCG 840 841 CATGTGTTTG GTCTGAAATC ATCGAATTCA AAAGCTGTGA AAAACTCAAA TTTGGCAATC 900 901 TCTTGGTTGG AAGCAACATT TCCTGAACTA GCCCGGAAAG AAGTTCATGC AGAAAATGCT 960 961 TCTGTACTTA GAGCTCAGCC TTATGCTTTA TTTGATGCGT CAATCTCATT GCAGGGGCCT 1020 1021 TTACGTAAAG TAAGTCACAG CGTTGAAGAA GACTCGGTTC ATCCTCCAGT TTGTGAAGGG 1080 1081 CGTGCTGTCA GTTTTCTTTA TGATTTAGTT AGCAAAGATT CTATTGTCGT AACTGCTTGG 1140 1141 AGTGGTGGCC AGTTGCAAAT TGATGCTTTA GCTGATGAAG TACAGCCGGT TTGGAAGGTC 1200 1201 GGTAGCCCAC CTCGGGTTTG TCTGGATTCA ACTGATAGTA TAGTTGGCCT TGCAATGATT 1260 1261 TGCGAGTCAT TGTCCAGTGA CACCTCTATT TTGAAGCTTG ACCTGCCACC TGATCATACC 1320 1321 TTATGGTTGG GGCATTCACC TCCTCTTTTA AGGCTGGCTA TTGTGGATTT AGCTCTGCCC 1380 1381 AGAAGAAGCG GTTCCATTAT ATCAATGTTT GTTGATCCCC TTATTTCAGA AAGAATATAT 1440 1441 TGCCTTCATG ATGGAGGAAT TGATTCAGTA GTGTTGCACT TTTTTCCTTT CACTAATCAG 1500 1501 AGTAGTGGCA AAGAGGACAT GATGAGAAGT CCCTCTGTGC ATCCCGTTCT TAGCACTTTC 1560 1561 CAAGGAGAAG CATCCTCAGC CTCCCCACTT TGTGGTTTCT TGGCTCTGTC AGATTCTTTC 1620 1621 GGAGATTCAT GGATTGTGGG TCTTACCCCT TCTTGTGAGT GTATAGTGTT GGAGATGGAG 1680 1681 ACTTGGAATA CACTGGTTCC CCCAATTATT GATAAGGTTG ACAAACTCAT AGACTCAGAG 1740 1741 GGGCCAAAAG ATACAGATAT TCCTACTATC ATAAGCAAAG AGCTCCTTAC TGGGCCCAGG 1800 1801 GTAGTTCTTT TGCCCCCTTC ATCGCCTCAT TTACGCTCCG TTGCCGCTGA TTCAATTGAA 1860 1861 GGCCGATCAA CACTTCATCA GTATTTCAAG CTGTTTCACG AAAATTATGT GGAATATGCC 1920 1921 CACAAGGTGT ACTTTGAACT TCAGCATCAT GCACCTCATG TAAAGAAGAT CATCGATGAC 1980 1981 CAGCACTCTC GATTGCACAA AGCACAGCAG AAGATTTTGG AAGTTGAAAG GAAACAGGAA 2040 2041 AAGATAGAGG ATCGTATTGA GCATGCAGTT CAGTTTCACA GTAAGCTAGA AGAGCGCTTG 2100 2101 CAAAGCCTGC GACACCTGCC TGCAGCACAC AAGAGATCTC TATCAAAAGC TGAACGAGAG 2160 2161 TTCAAGTCTG AACTTGACAG ATATAGGGGA GTGGAGTTGG ATGCTCTGCG CTTTTCTATT 2220 2221 GAAGCAGTAA ATGCCAGGTT GAAAAGATTC ACACATTCTC CACAGGCCAG TCGATCAAAT 2280 2281 GAACAGCGAC AATTATCAGT GAGGAGAAAG AGCCATGTTC AGGAAAATGA AATGTCACTG 2340 2341 CTTAAAGCAT CACTTGAAAA GCTCTCACTG GTGAACAGTG AAAATGCCAA GAAGGTTAAA 2400 2401 GTAGTTGAAT CCGCATTGAA ATGCCGCGAA ATAGGCACTT CATGA 2445 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Sol-1294 | Solanum lycopersicum | 88.3 | 3e-76 | 271 |
| LLPS-Viv-2209 | Vitis vinifera | 69.8 | 0.0 | 1133 |
| LLPS-Prp-0536 | Prunus persica | 67.52 | 0.0 | 1054 |
| LLPS-Mae-2004 | Manihot esculenta | 67.28 | 0.0 | 1071 |
| LLPS-Coc-1871 | Corchorus capsularis | 66.46 | 0.0 | 1082 |
| LLPS-Thc-2454 | Theobroma cacao | 65.81 | 0.0 | 1065 |
| LLPS-Gor-1226 | Gossypium raimondii | 65.81 | 0.0 | 1026 |
| LLPS-Pot-1720 | Populus trichocarpa | 65.72 | 0.0 | 1038 |
| LLPS-Dac-1485 | Daucus carota | 65.19 | 0.0 | 1043 |
| LLPS-Glm-2266 | Glycine max | 64.77 | 0.0 | 999 |
| LLPS-Phv-1667 | Phaseolus vulgaris | 64.55 | 0.0 | 996 |
| LLPS-Via-2444 | Vigna angularis | 63.79 | 0.0 | 985 |
| LLPS-Met-2296 | Medicago truncatula | 63.21 | 0.0 | 969 |
| LLPS-Hea-0483 | Helianthus annuus | 62.92 | 0.0 | 1006 |
| LLPS-Cus-1712 | Cucumis sativus | 61.02 | 0.0 | 966 |
| LLPS-Vir-2228 | Vigna radiata | 59.85 | 0.0 | 897 |
| LLPS-Art-1162 | Arabidopsis thaliana | 57.86 | 0.0 | 911 |
| LLPS-Arl-2957 | Arabidopsis lyrata | 57.51 | 0.0 | 910 |
| LLPS-Brr-1512 | Brassica rapa | 57.37 | 0.0 | 887 |
| LLPS-Brn-3092 | Brassica napus | 57.25 | 0.0 | 884 |
| LLPS-Bro-2810 | Brassica oleracea | 54.9 | 0.0 | 857 |
| LLPS-Amt-0215 | Amborella trichopoda | 52.01 | 0.0 | 708 |
| LLPS-Tru-0717 | Triticum urartu | 50.07 | 0.0 | 652 |
| LLPS-Mua-1173 | Musa acuminata | 49.82 | 0.0 | 695 |
| LLPS-Orb-0293 | Oryza barthii | 49.24 | 0.0 | 644 |
| LLPS-Orbr-1921 | Oryza brachyantha | 48.97 | 0.0 | 630 |
| LLPS-Ors-0137 | Oryza sativa | 48.7 | 0.0 | 664 |
| LLPS-Tra-0219 | Triticum aestivum | 48.19 | 0.0 | 682 |
| LLPS-Orp-1322 | Oryza punctata | 48.06 | 0.0 | 674 |
| LLPS-Brd-1569 | Brachypodium distachyon | 47.69 | 0.0 | 664 |
| LLPS-Hov-0980 | Hordeum vulgare | 47.57 | 0.0 | 674 |
| LLPS-Orgl-0668 | Oryza glumaepatula | 47.5 | 0.0 | 674 |
| LLPS-Orni-1606 | Oryza nivara | 47.5 | 0.0 | 674 |
| LLPS-Ori-0518 | Oryza indica | 47.5 | 0.0 | 671 |
| LLPS-Org-2148 | Oryza glaberrima | 47.5 | 0.0 | 674 |
| LLPS-Orr-1303 | Oryza rufipogon | 47.5 | 0.0 | 671 |
| LLPS-Orm-0839 | Oryza meridionalis | 47.31 | 0.0 | 668 |
| LLPS-Sei-0083 | Setaria italica | 47.25 | 0.0 | 672 |
| LLPS-Lep-0578 | Leersia perrieri | 47.05 | 0.0 | 649 |
| LLPS-Sob-0380 | Sorghum bicolor | 47.05 | 0.0 | 651 |
| LLPS-Zem-2143 | Zea mays | 45.54 | 0.0 | 633 |
| LLPS-Php-0084 | Physcomitrella patens | 34.61 | 7e-134 | 426 |
| LLPS-Gas-1067 | Galdieria sulphuraria | 30.95 | 6e-11 | 70.5 |
| LLPS-Miv-1238 | Microbotryum violaceum | 28.73 | 7e-10 | 67.0 |
| LLPS-Abg-1378 | Absidia glauca | 28.57 | 3e-11 | 71.6 |
| LLPS-Lac-0220 | Latimeria chalumnae | 27.56 | 2e-10 | 68.6 |
| LLPS-Xet-1020 | Xenopus tropicalis | 27.43 | 4e-07 | 57.8 |
| LLPS-Osl-1159 | Ostreococcus lucimarinus | 24.09 | 3e-25 | 116 |