LLPS-Mum-1227
Zfr
▼ OVERVIEW
Status: | Reviewed |
Protein Name: | Zinc finger RNA-binding protein |
Gene Name: | Zfr |
Ensembl Gene: | ENSMUSG00000022201.16 |
Ensembl Protein: | ENSMUSP00000119524.1 |
Organism: | Mus musculus |
Taxa ID: | 10090 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Description | Tissue/Cell | PMIDs |
---|---|---|---|
P-body | Predicted from orthologs | N/A | (View) |
▼ FUNCTION
Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA. Involved in the nucleocytoplasmic shuttling of STAU2 (By similarity). |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | ENSMUST00000157034.7 | ENSMUSP00000119524.1 |
Ensembl | ENSMUST00000156752.1 | ENSMUSP00000119251.1 |
Ensembl | ENSMUST00000155054.1 | ENSMUSP00000114992.1 |
Ensembl | ENSMUST00000122941.7 | ENSMUSP00000118911.1 |
Ensembl | ENSMUST00000128475.8 | ENSMUSP00000117207.2 |
UniProt | O88532, ZFR_MOUSE, Q3TY30, Q8BS85, Q8CGG5, Q91VZ0, Q9CT34 | |
GeneBank | AF071059, BC038599, AK011329, BC058570, AK034963, BC006962, AK158938 | AAH06962.1, BAE34733.1, AAH58570.1, AAC25762.1, BAC28897.1, BAB27548.1, AAH38599.1 |
RefSeq | NM_011767.2 | NP_035897.2 |
Entrez | 22763 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MIPICPVVSF TYVPSRLGED AKMATGNYFG FTHSGAAAAA AAAQYSQQPA SGVAYSHPTT 60 61 VASYTVHQAP VAAHTVTAAY APAAATVAVA RPAPVAVAAA ATAAAYGGYP TAHTATDYGY 120 121 TQRQQEAPPP PPPATTQNYQ DSYSYVRSTA PAVAYDSKQY YQQPTATAAA VAAAAQPQPS 180 181 VAETYYQTAP KAGYSQGATQ YTQAQQARQV TAIKPATPSP ATTTFSIYPV SSTVQPVAAA 240 241 ATVVPSYTQS ATYSTTAVTY SGTSYSGYEA AVYSAASSYY QQQQQQQKQA AAAAAAAAAT 300 301 AAWTGTTFTK KTPFQNKQLK PKQPPKPPQI HYCDVCKISC AGPQTYKEHL EGQKHKKKEA 360 361 ALKASQNTSS SNNSTRGTQN QLRCELCDVS CTGADAYAAH IRGAKHQKVV KLHTKLGKPI 420 421 PSTEPNVVSQ ATSSTAASAS KPTASPSSIG ASNCTLNTSS IATSSVKGLS TTGNSSLNST 480 481 SNTKVSAIPT NMAAKKTSTP KINFVGGNKL QSTGNKTEDL KGIDCVKNTP AASAVQIPEV 540 541 KQDAGSEPVT PASLAALQSD VQPVGHDYVE EVRNDEGKVI RFHCKLCECS FNDPNAKEMH 600 601 LKGRRHRLQY KKKVNPDLQV EVKPSIRARK IQEEKMRKQM QKEEYWRRRE EEERWRMEIR 660 661 RYEEDMYWRR MEEEQHHWDD RRRMPDGGYP HGPPGPLGLL GVRPGMPPQP QGPAPLRRPD 720 721 SSDDRYVMTK HATIYPTEEE LQAVQKIVSI TERALKLVSD SLSEHEKSKN KEGDDKKEGG 780 781 KDRALKGVLR VGVLAKGLLL RGDRNVNLVL LCSEKPSKSL LSRIAENLPK QLAVISPEKY 840 841 DIKCAVSEAA IILNSCVEPK MQVTITLTSP IIREENMREG DVTSGMVKDP PDVLDRQKCL 900 901 DALAALRHAK WFQARANGLQ SCVIIIRILR DLCQRVPTWS DFPSWAMELL VEKAISSASS 960 961 PQSPGDALRR VFECISSGII LKGSPGLLDP CEKDPFDTLA TMTDQQREDI TSSAQFALRL 1020 1021 LAFRQIHKVL GMDPLPQMNQ RFNIHNNRKR RRDSDGVDGF EAEGKKDKKD YDNF 1074 |
Nucleotide CDS Sequence (FASTA) |
1 ATGATTCCCA TATGCCCTGT AGTTTCTTTC ACCTATGTGC CCAGCCGGCT GGGGGAAGAT 60 61 GCCAAAATGG CGACCGGCAA CTACTTTGGA TTCACCCACA GCGGGGCGGC GGCGGCGGCG 120 121 GCTGCGGCCC AGTATAGCCA GCAGCCAGCT TCGGGTGTAG CCTATTCCCA TCCAACTACA 180 181 GTTGCTAGCT ACACTGTCCA TCAGGCTCCA GTAGCTGCTC ACACAGTTAC TGCTGCTTAC 240 241 GCACCAGCAG CCGCCACAGT TGCAGTTGCC AGGCCTGCTC CAGTTGCTGT TGCAGCTGCT 300 301 GCAACAGCTG CTGCATATGG AGGCTACCCC ACTGCACACA CAGCAACCGA CTATGGTTAC 360 361 ACCCAGAGGC AACAAGAAGC ACCACCACCA CCACCCCCAG CTACTACACA GAACTACCAG 420 421 GACTCATATT CGTATGTAAG ATCCACAGCC CCTGCTGTAG CTTATGATAG TAAGCAGTAC 480 481 TACCAACAGC CAACAGCAAC TGCTGCTGCT GTAGCTGCTG CTGCCCAGCC TCAGCCTTCT 540 541 GTTGCTGAAA CCTACTATCA GACAGCCCCT AAAGCAGGTT ATAGCCAAGG TGCAACACAG 600 601 TATACTCAAG CGCAGCAAGC TCGGCAAGTG ACAGCCATAA AACCAGCCAC ACCAAGTCCA 660 661 GCTACCACTA CTTTCTCCAT TTATCCTGTG TCCTCCACTG TACAACCGGT GGCAGCTGCA 720 721 GCTACTGTGG TACCATCCTA TACTCAGAGT GCTACTTACA GTACCACAGC AGTTACTTAT 780 781 TCTGGTACAT CTTATTCAGG TTATGAAGCA GCCGTATATT CAGCTGCGTC TTCCTACTAC 840 841 CAACAGCAGC AGCAACAACA GAAGCAAGCA GCAGCAGCAG CTGCTGCTGC AGCAGCAACA 900 901 GCTGCCTGGA CAGGGACCAC CTTTACTAAA AAAACACCAT TCCAAAATAA ACAACTGAAA 960 961 CCAAAACAGC CTCCCAAACC ACCCCAGATT CATTATTGTG ATGTTTGTAA GATCAGCTGT 1020 1021 GCTGGACCAC AGACTTATAA AGAGCACTTA GAAGG 1055 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Chromosome | |
Cellular Component | Cytoplasm | |
Cellular Component | Nucleus | |
Molecular Function | DNA binding | |
Molecular Function | Double-stranded RNA binding | |
Molecular Function | Single-stranded RNA binding | |
Molecular Function | Zinc ion binding | |
Biological Process | Multicellular organism development |
▼ ANNOTATION
Mutation | ||||
CGAP |
Physicochemical | ||||
Compute pI/Mw | AAindex |
Localization | ||||
COMPARTMENTS |
Expression | ||||
ArrayExpress | GXD | TISSUES |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Orc-1487 | Oryctolagus cuniculus | 100.0 | 2e-51 | 201 |
LLPS-Hos-1966 | Homo sapiens | 100.0 | 2e-51 | 201 |
LLPS-Pat-0058 | Pan troglodytes | 100.0 | 2e-51 | 201 |
LLPS-Ran-1136 | Rattus norvegicus | 100.0 | 2e-51 | 201 |
LLPS-Caj-0706 | Callithrix jacchus | 100.0 | 2e-51 | 201 |
LLPS-Mea-0418 | Mesocricetus auratus | 100.0 | 2e-51 | 201 |
LLPS-Aon-1501 | Aotus nancymaae | 100.0 | 2e-51 | 201 |
LLPS-Eqc-4323 | Equus caballus | 99.56 | 6e-52 | 201 |
LLPS-Mam-2434 | Macaca mulatta | 99.56 | 2e-51 | 201 |
LLPS-Otg-0867 | Otolemur garnettii | 99.56 | 2e-51 | 201 |
LLPS-Rhb-3244 | Rhinopithecus bieti | 99.56 | 2e-51 | 201 |
LLPS-Fec-1366 | Felis catus | 99.56 | 2e-51 | 201 |
LLPS-Man-0046 | Macaca nemestrina | 99.56 | 2e-51 | 201 |
LLPS-Aim-1835 | Ailuropoda melanoleuca | 99.56 | 2e-51 | 201 |
LLPS-Bot-1051 | Bos taurus | 99.56 | 2e-51 | 201 |
LLPS-Chs-1775 | Chlorocebus sabaeus | 99.56 | 2e-51 | 201 |
LLPS-Sus-1365 | Sus scrofa | 99.56 | 2e-51 | 201 |
LLPS-Cea-1951 | Cercocebus atys | 99.56 | 2e-51 | 201 |
LLPS-Maf-0492 | Macaca fascicularis | 99.54 | 9e-43 | 174 |
LLPS-Loa-3042 | Loxodonta africana | 99.51 | 1e-36 | 154 |
LLPS-Mup-2131 | Mustela putorius furo | 99.49 | 7e-52 | 200 |
LLPS-Gog-1165 | Gorilla gorilla | 99.49 | 2e-51 | 201 |
LLPS-Urm-2179 | Ursus maritimus | 99.46 | 2e-27 | 124 |
LLPS-Myl-0512 | Myotis lucifugus | 99.46 | 5e-28 | 126 |
LLPS-Pap-0409 | Pan paniscus | 99.34 | 9e-27 | 122 |
LLPS-Mod-0394 | Monodelphis domestica | 99.12 | 5e-51 | 200 |
LLPS-Fud-1428 | Fukomys damarensis | 99.07 | 2e-42 | 172 |
LLPS-Poa-0922 | Pongo abelii | 98.92 | 8e-27 | 122 |
LLPS-Ora-0575 | Ornithorhynchus anatinus | 98.91 | 4e-26 | 120 |
LLPS-Meg-0291 | Meleagris gallopavo | 98.68 | 9e-27 | 122 |
LLPS-Cap-0394 | Cavia porcellus | 98.59 | 0.0 | 697 |
LLPS-Caf-3814 | Canis familiaris | 98.47 | 3e-49 | 194 |
LLPS-Cas-0561 | Carlito syrichta | 98.37 | 4e-26 | 120 |
LLPS-Sah-0284 | Sarcophilus harrisii | 98.37 | 3e-26 | 120 |
LLPS-Ict-2840 | Ictidomys tridecemlineatus | 97.54 | 0.0 | 1215 |
LLPS-Dio-2403 | Dipodomys ordii | 97.54 | 0.0 | 1210 |
LLPS-Mal-0680 | Mandrillus leucophaeus | 97.28 | 0.0 | 1210 |
LLPS-Paa-0395 | Papio anubis | 97.28 | 0.0 | 1208 |
LLPS-Anp-1557 | Anas platyrhynchos | 97.27 | 2e-24 | 114 |
LLPS-Nol-0112 | Nomascus leucogenys | 97.15 | 0.0 | 1211 |
LLPS-Ova-1142 | Ovis aries | 97.02 | 0.0 | 1210 |
LLPS-Gaga-3181 | Gallus gallus | 96.49 | 2e-49 | 195 |
LLPS-Anc-1105 | Anolis carolinensis | 96.49 | 4e-49 | 194 |
LLPS-Fia-0252 | Ficedula albicollis | 96.49 | 3e-49 | 194 |
LLPS-Tag-1035 | Taeniopygia guttata | 94.91 | 4e-40 | 165 |
LLPS-Pes-0268 | Pelodiscus sinensis | 93.15 | 0.0 | 890 |
LLPS-Leo-1310 | Lepisosteus oculatus | 90.62 | 8e-43 | 174 |
LLPS-Xet-0175 | Xenopus tropicalis | 88.27 | 5e-45 | 181 |
LLPS-Icp-2252 | Ictalurus punctatus | 85.2 | 2e-40 | 166 |
LLPS-Dar-1837 | Danio rerio | 84.62 | 3e-43 | 176 |
LLPS-Orl-3311 | Oryzias latipes | 83.59 | 6e-42 | 171 |
LLPS-Orn-3291 | Oreochromis niloticus | 82.05 | 6e-38 | 158 |
LLPS-Tar-0137 | Takifugu rubripes | 78.97 | 1e-38 | 160 |
LLPS-Asm-1169 | Astyanax mexicanus | 78.61 | 3e-26 | 120 |
LLPS-Lac-0639 | Latimeria chalumnae | 77.25 | 5e-41 | 168 |
LLPS-Ten-0917 | Tetraodon nigroviridis | 76.77 | 2e-38 | 160 |
LLPS-Scm-2024 | Scophthalmus maximus | 74.81 | 0.0 | 926 |
LLPS-Scf-2217 | Scleropages formosus | 74.19 | 1e-72 | 253 |
LLPS-Drm-0099 | Drosophila melanogaster | 72.92 | 6e-34 | 145 |
LLPS-Gaa-0638 | Gasterosteus aculeatus | 72.6 | 0.0 | 902 |
LLPS-Xim-3663 | Xiphophorus maculatus | 71.68 | 0.0 | 939 |
LLPS-Pof-1062 | Poecilia formosa | 70.37 | 0.0 | 926 |
LLPS-Cae-1523 | Caenorhabditis elegans | 55.1 | 4e-25 | 116 |
LLPS-Tut-1798 | Tursiops truncatus | 53.99 | 3e-106 | 353 |
LLPS-Cis-0641 | Ciona savignyi | 48.34 | 1e-29 | 124 |
LLPS-Cii-1804 | Ciona intestinalis | 44.62 | 8e-74 | 268 |