LLPS-Icp-3231
RBM27
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | RNA-binding protein 27 isoform X1 |
Gene Name: | RBM27, rbm27 |
Ensembl Gene: | ENSIPUG00000012280.1 |
Ensembl Protein: | ENSIPUP00000018271.1 |
Organism: | Ictalurus punctatus |
Taxa ID: | 7998 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Nucleolus | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | ENSIPUT00000019049.1 | ENSIPUP00000018271.1 |
Ensembl | ENSIPUT00000019162.1 | ENSIPUP00000018381.1 |
Ensembl | ENSIPUT00000019090.1 | ENSIPUP00000018313.1 |
UniProt | W5UES1, W5UES1_ICTPU | |
GeneBank | JT414146 | AHH40511.1 |
RefSeq | , XM_017493349.1 | , XP_017348838.1, XP_017348838.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MIIDNVDALK SWLAKLLEPI CDADPSALAN YVVALVKKDK SEKELRALCA DQLDVFLQKE 60 61 TTDFVEKLFE CLTTKNYLGN PPVKELPKEE TKAQAPKPAE TEEIPVVLQT GHVEDEKESR 120 121 RRRSPLRNRS DFNESRNRDE RRRDERRRRE PERHGKSGEM YRERERERER NERRRASSRG 180 181 RSRSRSRSSS RGKSRDREQR REHRSKFEPE RKEPEPYTPL SSGPLGKPQP PPPQLPLLPL 240 241 PHPRSPFPPS GSPSIPSAVT AHLPDSTTEN WAAYFNHGEG KSGTLKHRCR DYDEKGFCVR 300 301 GDLCPFDHGN DPLIVDDVAL PTMIPFPPPG MPPARMPPPM PPMPEPLPIM PMPIPPHGQP 360 361 PPPGIYPMAG PPLIPSSGIE TPPHARTSTS SPLAPPGVNP PPPPPPPPPP SSSAISSASL 420 421 HPQYTLSEYS YDPEAYNPES PAITGTGRVQ YRQFIPRIQT QRPNLIGLTS GDTQSSRAAN 480 481 IVIQTDPSIT NATSGEVRHG MELDSRKRSL ESADGPQAKK PWTDKQNFNN QHKPAFPKKN 540 541 HYVNTKLEVR RIPRDLNNIT KLNEHFSKFG TIVNIQVVFG GDPEAALIQY TANEEARRAI 600 601 SSTEAVLNNR FIRVYWHREN TTQNQEQNTN QSTTLGTQIP PVHKVINKPH TPGSYVLNKS 660 661 FPKQQSSSGT GPTASLDPLS PAPESSSAVA PASALQKGLY SRTAFKLLPK GLGKTAKALE 720 721 DQDVLKKKQE ALKLQQDMRK KKREMLEKQI EYQKVLINRL EKNRGMKPEE RANIMKTLKE 780 781 LTEKISQLKN EISNSNVSQA TGNAAQPKTK TDAQKELLDA ELDFHKKLTT GEDTTDLKRR 840 841 LGQLQVEAKR LGLLPGGRAK LLPSASRGRG RGRGRSGRGR GAPGHMVVDH RPRTLAILGV 900 901 TQEEKEELMP HFVKFGEVEE LRDQDATSVV MTFKTRSEAE NAANQGAKFK GRILQISWYK 960 961 PKTPSVTTEP EEEESKEEMN AESVSPFLLP EEEEEDDDED DDYESRSWRR 1010 |
Nucleotide CDS Sequence (FASTA) |
1 ATGATTATAG ATAATGTGGA CGCGCTGAAG TCGTGGCTGG CCAAACTACT TGAGCCGATA 60 61 TGTGATGCGG ACCCTTCTGC TTTGGCAAAC TACGTTGTTG CTTTGGTGAA AAAGGACAAA 120 121 TCTGAGAAGG AGCTGCGGGC GTTATGTGCT GACCAGCTGG ACGTCTTCCT GCAGAAAGAA 180 181 ACCACTGACT TTGTGGAGAA ACTCTTTGAA TGTCTCACCA CCAAAAACTA CCTGGGAAAT 240 241 CCACCTGTTA AAGAACTTCC TAAAGAGGAG ACGAAAGCTC AAGCTCCAAA ACCTGCTGAA 300 301 ACAGAAGAGG TGACGTTTCT ACTCTCATTA TTATTAGTTT TATTGAATCG GGACGAGCGG 360 361 CGGAGAGACG AGCGCAGACG GCGGGAGCCT GAGCGTCACG GGAAGAGCGG CGAGATGTAC 420 421 CGAGAGAGAG AACGGGAACG AGAGAGGAAC GAGCGGAGGA GAGCGAGCTC ACGAGGACGC 480 481 AGTCGGAGTC GCAGTCGCAG CAGCAGCAGA GGGAAGAGCC GAGACCGAGA ACAGAGACGA 540 541 GAACACAGGT CCAAATTCGA GCCGGAGCGG AAAGAGCCGG AGCCGTACAC GCCGTTATCC 600 601 TCAGGTCCCT TAGGCAAACC TCAGCCACCG CCGCCGCAGC TGCCTCTGCT CCCGCTGCCC 660 661 CACCCTCGCT CGCCGTTTCC CCCCTCGGGC AGTCCCAGCA TCCCCAGCGC CGTAACGGCT 720 721 CACCTGCCCG ACAGCACCAC CGAGAACTGG GCTGCTTACT TTAACCACGG CGAGGGCAAG 780 781 AGCGGCACGC TGAAACACCG CTGCCGGGAT TACGACGAGA AAGGATTCTG TGTCCGCGGT 840 841 GACCTTTGTC CTTTCGACCA TGGCAACGAC CCTCTGATCG TGGACGACGT CGCCCTGCCC 900 901 ACGATGATTC CCTTCCCTCC CCCCGGCATG CCCCCCGCAC GCATGCCCCC TCCCATGCCC 960 961 CCCATGCCCG AGCCCCTCCC CATCATGCCC ATGCCGATAC CTCCCCATGG ACAGCCCCCG 1020 1021 CCTCCAGGCA TCTACCCCAT GAGAAATGTG ATGCAGTTTA CCATTTTGTC CCGTTTAGGA 1080 1081 CCACCTCTAA TCCCATCCAG TGGGATAGAG ACTCCGCCCC ATGCACGGAC GAGCACCTCC 1140 1141 TCCCCTCTGG CTCCGCCCGG AGTAAACCCA CCTCCACCTC CTCCTCCTCC ACCTCCTCCT 1200 1201 TCTTCCTCTG CTATTTCTTC TGCTTCTCTA CATCCTCAGT ACACTCTGTC TGAATACAGC 1260 1261 TACGATCCTG AAGCGTATAA TCCAGAATCT CCGGCCATCA CCGGGACGGG CCGAGTACAG 1320 1321 TACCGACAAT TTATTCCTCG CATTCAGACC CAGAGACCCA ACTTGATCGG TCTCACGTCA 1380 1381 GGAGACACAC AGAGCTCCCG AGCTGCTAAT ATAGTAATCC AGACTGATCC GTCGATAACC 1440 1441 AACGCCACGA GCGGTGAGGT GAGACACGGC ATGGAGCTCG ACAGCAGGAA GAGATCACTG 1500 1501 GAGTCTGCAG ATGGGCCTCA GGCCAAAAAG CCCTGGACAG ACAAGCAAAA TTTCAACAAT 1560 1561 CAGCACAAGC CGGCCTTCCC CAAGAAGAAC CACTACGTCA ACACCAAACT GGAAGTCCGC 1620 1621 AGAATTCCCC GAGATCTCAA CAACATCACC AAACTAAACG AACATTTCAG CAAGTTTGGG 1680 1681 ACCATCGTGA ATATCCAGGT GGTGTTTGGT GGCGACCCGG AGGCGGCTCT GATCCAGTAC 1740 1741 ACGGCCAACG AGGAGGCGCG GAGGGCGATC TCTAGCACCG AGGCGGTGCT CAATAACCGC 1800 1801 TTTATTAGAG TGTACTGGCA CAGAGAGAAC ACGACGCAGA ACCAGGAGCA GAACACCAAC 1860 1861 CAGAGCACCA CCCTCGGCAC ACAGATACCC CCTGTCCATA AGGTCATTAA TAAGCCACAC 1920 1921 ACACCCGGGT CCTATGTGCT GAATAAGAGC TTCCCAAAAC AGCAGAGTAG CTCCGGGACC 1980 1981 GGACCTACAG CCAGTCTTGA CCCGCTCAGT CCCGCTCCAG AGTCCTCATC GGCAGTCGCT 2040 2041 CCAGCTTCTG CACTACAGAA AGGACTTTAC TCACGCACAG CATTTAAACT CCTCCCAAAG 2100 2101 GGTCTGGGGA AAACGGCCAA AGCCCTTGAG GATCAGGATG TTCTGAAAAA GAAGCAGGAG 2160 2161 GCGCTGAAGC TGCAGCAGGA TATGAGGAAA AAGAAACGAG AGATGCTGGA AAAACAGATA 2220 2221 GAGTATCAAA AAGTGTTAAT AAATCGCCTG GAGAAGAATC GTGGAATGAA GCCAGAGGAG 2280 2281 CGAGCAAACA TTATGAAGAC CTTGAAGGAG CTCACAGAGA AGATCTCTCA GCTGAAGAAC 2340 2341 GAGATCAGCA ATAGTAACGT CTCCCAGGCC ACCGGCAACG CAAGCATTCA CGTGTTCACT 2400 2401 GTGTGTGTTG TGGGGGGGGG GGTGCGATTG GAATTATTAC TGGATGCACA GAAGGAGCTG 2460 2461 CTGGATGACA CTACAGACCT GAAGAGGAGA CTGGGTCAGC TGCAGGTTGA GGCGAAACGG 2520 2521 TTAGGGCTGT TACCCGGAGG CCGAGCTAAG CTGCTTCCGA GCGCGAGTCG AGGCCGGGGC 2580 2581 CGAGGCAGAG GAAGGAGTGG AAGAGGCAGA GGAGCTCCCG GCCACATGGT GGTAGATCAC 2640 2641 CGTCCTCGCA CCCTCGCCAT CCTGGGAGTC ACGCAGGAGG AGAAGGAAGA GCTGATGCCG 2700 2701 CACTTTGTGA AATTCGGAGA GGTTGAGGAG CTTCGTGACC AGGACGCTAC CAGCGTAGTG 2760 2761 ATGACCTTCA AAACTCGCAG TGAAGCAGAG AATGCTGCAA ATCAAGGGGC GAAGTTCAAA 2820 2821 GGGCGGATTC TACAAATCTC CTGGTACAAA CCCAAAACCC CGTCTGTCAC CACTGAGCCT 2880 2881 GAAGAAGAGG AGTCAAAGGA AGAGATGAAT GCGGAATCAG TGAGCCCTTT CTTGCTGCCG 2940 2941 GAGGAAGAAG AGGAAGACGA CGATGAAGAT GATGATTATG AGAGTCGCTC ATGGAGGCGA 3000 3001 TGA 3003 |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Pes-3381 | Pelodiscus sinensis | 87.18 | 3e-34 | 146 |
LLPS-Scm-0316 | Scophthalmus maximus | 86.96 | 2e-41 | 169 |
LLPS-Anc-1066 | Anolis carolinensis | 86.08 | 6e-34 | 145 |
LLPS-Pof-3138 | Poecilia formosa | 83.7 | 1e-39 | 163 |
LLPS-Xim-0140 | Xiphophorus maculatus | 83.7 | 2e-39 | 163 |
LLPS-Fec-1764 | Felis catus | 83.13 | 7e-34 | 145 |
LLPS-Sus-0142 | Sus scrofa | 83.13 | 4e-34 | 145 |
LLPS-Ova-2577 | Ovis aries | 83.13 | 7e-34 | 145 |
LLPS-Aim-0498 | Ailuropoda melanoleuca | 83.13 | 7e-34 | 145 |
LLPS-Mup-0462 | Mustela putorius furo | 83.13 | 8e-34 | 145 |
LLPS-Bot-1466 | Bos taurus | 83.13 | 7e-34 | 145 |
LLPS-Gaa-3138 | Gasterosteus aculeatus | 82.52 | 2e-41 | 169 |
LLPS-Meg-0095 | Meleagris gallopavo | 80.95 | 3e-21 | 104 |
LLPS-Leo-3029 | Lepisosteus oculatus | 80.95 | 3e-42 | 171 |
LLPS-Orc-1966 | Oryctolagus cuniculus | 80.9 | 4e-34 | 146 |
LLPS-Cas-0157 | Carlito syrichta | 80.9 | 7e-34 | 145 |
LLPS-Scf-3966 | Scleropages formosus | 80.77 | 8e-31 | 135 |
LLPS-Orl-0506 | Oryzias latipes | 80.37 | 3e-41 | 169 |
LLPS-Anp-2724 | Anas platyrhynchos | 78.69 | 1e-20 | 102 |
LLPS-Mod-2133 | Monodelphis domestica | 78.69 | 2e-20 | 101 |
LLPS-Nol-2894 | Nomascus leucogenys | 78.69 | 3e-20 | 101 |
LLPS-Eqc-2727 | Equus caballus | 78.69 | 4e-20 | 100 |
LLPS-Xet-1806 | Xenopus tropicalis | 78.05 | 1e-31 | 137 |
LLPS-Fia-1234 | Ficedula albicollis | 77.78 | 1e-30 | 134 |
LLPS-Man-1874 | Macaca nemestrina | 77.78 | 2e-30 | 134 |
LLPS-Pap-3029 | Pan paniscus | 77.78 | 3e-30 | 133 |
LLPS-Pat-0937 | Pan troglodytes | 77.78 | 3e-30 | 133 |
LLPS-Hos-1502 | Homo sapiens | 77.78 | 2e-30 | 134 |
LLPS-Ict-1617 | Ictidomys tridecemlineatus | 77.78 | 2e-30 | 134 |
LLPS-Tag-0287 | Taeniopygia guttata | 77.78 | 2e-30 | 134 |
LLPS-Mam-2481 | Macaca mulatta | 77.78 | 2e-30 | 134 |
LLPS-Caf-1593 | Canis familiaris | 77.78 | 2e-30 | 134 |
LLPS-Poa-2996 | Pongo abelii | 77.78 | 3e-30 | 133 |
LLPS-Cap-0069 | Cavia porcellus | 77.78 | 6e-30 | 132 |
LLPS-Fud-1084 | Fukomys damarensis | 77.78 | 2e-30 | 134 |
LLPS-Caj-4137 | Callithrix jacchus | 77.78 | 2e-30 | 134 |
LLPS-Gog-1021 | Gorilla gorilla | 77.78 | 2e-30 | 134 |
LLPS-Aon-1716 | Aotus nancymaae | 77.78 | 2e-30 | 134 |
LLPS-Cea-0020 | Cercocebus atys | 77.78 | 3e-30 | 133 |
LLPS-Mea-1139 | Mesocricetus auratus | 77.78 | 2e-30 | 134 |
LLPS-Mum-1032 | Mus musculus | 77.78 | 3e-30 | 133 |
LLPS-Maf-0521 | Macaca fascicularis | 77.78 | 2e-30 | 134 |
LLPS-Chs-1304 | Chlorocebus sabaeus | 77.78 | 2e-30 | 134 |
LLPS-Mal-0991 | Mandrillus leucophaeus | 77.78 | 3e-30 | 133 |
LLPS-Paa-0858 | Papio anubis | 77.78 | 3e-30 | 133 |
LLPS-Ran-2779 | Rattus norvegicus | 77.78 | 3e-30 | 133 |
LLPS-Dar-2575 | Danio rerio | 77.71 | 0.0 | 771 |
LLPS-Sah-1768 | Sarcophilus harrisii | 77.42 | 2e-20 | 102 |
LLPS-Lac-1579 | Latimeria chalumnae | 76.92 | 2e-29 | 130 |
LLPS-Orn-2665 | Oreochromis niloticus | 76.72 | 6e-43 | 174 |
LLPS-Urm-0653 | Ursus maritimus | 76.62 | 1e-27 | 125 |
LLPS-Asm-0574 | Astyanax mexicanus | 76.54 | 1e-30 | 135 |
LLPS-Otg-1996 | Otolemur garnettii | 75.61 | 2e-28 | 127 |
LLPS-Ora-1557 | Ornithorhynchus anatinus | 75.34 | 7e-24 | 112 |
LLPS-Gaga-2851 | Gallus gallus | 75.29 | 2e-30 | 134 |
LLPS-Loa-1225 | Loxodonta africana | 72.64 | 1e-34 | 147 |
LLPS-Myl-1819 | Myotis lucifugus | 72.64 | 2e-34 | 147 |
LLPS-Dio-2158 | Dipodomys ordii | 72.62 | 3e-27 | 123 |
LLPS-Rhb-1849 | Rhinopithecus bieti | 71.7 | 5e-34 | 145 |
LLPS-Ten-3693 | Tetraodon nigroviridis | 71.43 | 2e-11 | 72.4 |
LLPS-Tar-1955 | Takifugu rubripes | 71.43 | 2e-11 | 72.4 |
LLPS-Cii-0419 | Ciona intestinalis | 66.67 | 3e-25 | 117 |
LLPS-Zyt-1225 | Zymoseptoria tritici | 61.76 | 4e-07 | 58.5 |
LLPS-Cae-0922 | Caenorhabditis elegans | 58.23 | 3e-17 | 91.3 |
LLPS-Tum-0911 | Tuber melanosporum | 58.06 | 2e-06 | 55.8 |
LLPS-Drm-0005 | Drosophila melanogaster | 58.02 | 7e-16 | 87.0 |
LLPS-Art-2721 | Arabidopsis thaliana | 55.56 | 4e-08 | 62.0 |
LLPS-Bro-1216 | Brassica oleracea | 55.56 | 5e-08 | 61.6 |
LLPS-Mua-2218 | Musa acuminata | 55.56 | 9e-08 | 60.8 |
LLPS-Brn-0479 | Brassica napus | 55.56 | 5e-08 | 61.6 |
LLPS-Arl-0936 | Arabidopsis lyrata | 55.56 | 4e-08 | 61.6 |
LLPS-Viv-1004 | Vitis vinifera | 54.55 | 7e-07 | 57.8 |
LLPS-Met-0540 | Medicago truncatula | 54.55 | 7e-07 | 57.8 |
LLPS-Amt-0204 | Amborella trichopoda | 52.78 | 4e-07 | 58.5 |
LLPS-Mae-0919 | Manihot esculenta | 52.78 | 5e-07 | 58.5 |
LLPS-Nia-0625 | Nicotiana attenuata | 52.78 | 3e-07 | 58.9 |
LLPS-Sob-1149 | Sorghum bicolor | 52.78 | 9e-08 | 60.5 |
LLPS-Pot-2132 | Populus trichocarpa | 52.78 | 3e-07 | 58.9 |
LLPS-Gor-2221 | Gossypium raimondii | 52.78 | 4e-07 | 58.5 |
LLPS-Zem-2549 | Zea mays | 52.78 | 9e-08 | 60.5 |
LLPS-Coc-1993 | Corchorus capsularis | 52.78 | 2e-07 | 59.3 |
LLPS-Thc-2080 | Theobroma cacao | 52.78 | 3e-07 | 58.9 |
LLPS-Hea-1573 | Helianthus annuus | 52.78 | 3e-07 | 58.9 |
LLPS-Sei-0853 | Setaria italica | 52.78 | 1e-07 | 60.5 |
LLPS-Cus-0483 | Cucumis sativus | 52.78 | 5e-07 | 58.2 |
LLPS-Sot-2238 | Solanum tuberosum | 52.78 | 3e-07 | 58.9 |
LLPS-Usm-0995 | Ustilago maydis | 50.68 | 5e-14 | 80.9 |
LLPS-Spr-0656 | Sporisorium reilianum | 50.0 | 5e-14 | 80.9 |
LLPS-Prp-1133 | Prunus persica | 47.62 | 2e-07 | 59.3 |
LLPS-Pug-0724 | Puccinia graminis | 47.37 | 2e-12 | 75.9 |
LLPS-Abg-0351 | Absidia glauca | 44.23 | 4e-07 | 58.5 |
LLPS-Yal-1156 | Yarrowia lipolytica | 42.86 | 2e-08 | 62.4 |
LLPS-Scp-0698 | Schizosaccharomyces pombe | 42.71 | 2e-14 | 82.0 |
LLPS-Asc-0733 | Aspergillus clavatus | 41.67 | 1e-09 | 66.6 |
LLPS-Nef-0851 | Neosartorya fischeri | 40.28 | 1e-08 | 63.2 |
LLPS-Asfu-0934 | Aspergillus fumigatus | 40.28 | 2e-08 | 62.8 |
LLPS-Sol-2383 | Solanum lycopersicum | 40.0 | 4e-08 | 61.2 |
LLPS-Php-0307 | Physcomitrella patens | 38.67 | 9e-07 | 57.4 |
LLPS-Tru-1345 | Triticum urartu | 37.97 | 2e-08 | 62.4 |
LLPS-Hov-1537 | Hordeum vulgare | 37.97 | 2e-08 | 62.8 |
LLPS-Tra-1279 | Triticum aestivum | 37.97 | 2e-08 | 62.4 |
LLPS-Dos-0427 | Dothistroma septosporum | 37.5 | 3e-06 | 55.5 |
LLPS-Dac-1243 | Daucus carota | 37.14 | 1e-06 | 57.0 |
LLPS-Glm-2206 | Glycine max | 37.14 | 1e-06 | 56.6 |
LLPS-Fus-1531 | Fusarium solani | 36.84 | 2e-10 | 69.3 |
LLPS-Beb-0061 | Beauveria bassiana | 36.67 | 1e-10 | 70.1 |
LLPS-Asf-0389 | Aspergillus flavus | 36.49 | 2e-06 | 56.6 |
LLPS-Aso-1480 | Aspergillus oryzae | 36.49 | 2e-06 | 56.6 |
LLPS-Scc-1151 | Schizosaccharomyces cryophilus | 36.08 | 2e-08 | 62.0 |
LLPS-Sem-2372 | Selaginella moellendorffii | 35.96 | 4e-10 | 68.2 |
LLPS-Orbr-2217 | Oryza brachyantha | 35.44 | 1e-07 | 60.1 |
LLPS-Trr-1541 | Trichoderma reesei | 35.44 | 7e-08 | 60.8 |
LLPS-Crn-0923 | Cryptococcus neoformans | 34.92 | 3e-12 | 74.7 |
LLPS-Fuo-0389 | Fusarium oxysporum | 34.83 | 8e-09 | 63.9 |
LLPS-Fuv-0758 | Fusarium verticillioides | 34.83 | 7e-09 | 63.9 |
LLPS-Ast-0846 | Aspergillus terreus | 34.78 | 5e-09 | 64.7 |
LLPS-Brr-1068 | Brassica rapa | 34.29 | 6e-07 | 57.8 |
LLPS-Orp-1335 | Oryza punctata | 34.18 | 2e-07 | 59.7 |
LLPS-Ors-1248 | Oryza sativa | 34.18 | 2e-07 | 59.7 |
LLPS-Org-1509 | Oryza glaberrima | 34.18 | 2e-07 | 59.7 |
LLPS-Orr-1808 | Oryza rufipogon | 34.18 | 2e-07 | 59.7 |
LLPS-Orm-0474 | Oryza meridionalis | 34.18 | 2e-07 | 59.7 |
LLPS-Orni-1467 | Oryza nivara | 34.18 | 2e-07 | 59.3 |
LLPS-Orb-1066 | Oryza barthii | 34.18 | 2e-07 | 59.7 |
LLPS-Lep-0501 | Leersia perrieri | 34.18 | 2e-07 | 59.3 |
LLPS-Orgl-1796 | Oryza glumaepatula | 34.18 | 2e-07 | 60.1 |