LLPS-Hos-a1021
CACNB4
▼ Classification
Condensates:
Condensate | Description | Tissue/Cell | PMIDs |
---|---|---|---|
Postsynaptic density | "...We report the first direct comparison of the proteome of triplicate isolates of mouse and human cortical postsynaptic densities. The mouse postsynaptic density comprised 1556 proteins and the human one 1461." | Human cortex | 23071613 |
▼ FUNCTION
The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting. |
▼ CROSS REFERENCE
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MSSSSYAKNG TADGPHSPTS QVARGTTTRR SRLKRSDGST TSTSFILRQG SADSYTSRPS 60 61 DSDVSLEEDR EAIRQEREQQ AAIQLERAKS KPVAFAVKTN VSYCGALDED VPVPSTAISF 120 121 DAKDFLHIKE KYNNDWWIGR LVKEGCEIGF IPSPLRLENI RIQQEQKRGR FHGGKSSGNS 180 181 SSSLGEMVSG TFRATPTSTA KQKQKVTEHI PPYDVVPSMR PVVLVGPSLK GYEVTDMMQK 240 241 ALFDFLKHRF DGRISITRVT ADISLAKRSV LNNPSKRAII ERSNTRSSLA EVQSEIERIF 300 301 ELARSLQLVV LDADTINHPA QLIKTSLAPI IVHVKVSSPK VLQRLIKSRG KSQSKHLNVQ 360 361 LVAADKLAQC PPEMFDVILD ENQLEDACEH LGEYLEAYWR ATHTTSSTPM TPLLGRNLGS 420 421 TALSPYPTAI SGLQSQRMRH SNHSTENSPI ERRSLMTSDE NYHNERARKS RNRLSSSSQH 480 481 SRDHYPLVEE DYPDSYQDTY KPHRNRGSPG GYSHDSRHRL 520 |
Nucleotide CDS Sequence (FASTA) |
1 ATGTCCTCCT CCTCCTACGC CAAGAACGGG ACCGCGGACG GGCCGCACTC CCCCACCTCG 60 61 CAGGTGGCCC GAGGCACCAC AACCCGGAGG AGCAGGTTGA AAAGATCCGA TGGCAGCACC 120 121 ACTTCGACCA GCTTCATCCT CAGACAGGGT TCAGCGGATT CCTACACAAG CAGGCCGTCT 180 181 GACTCCGATG TCTCTTTGGA AGAGGACCGG GAAGCAATTC GACAGGAGAG AGAACAGCAA 240 241 GCAGCTATCC AGCTTGAGAG AGCAAAGTCC AAACCTGTAG CATTTGCCGT GAAGACAAAT 300 301 GTGAGCTACT GCGGCGCCCT GGACGAGGAT GTGCCTGTTC CAAGCACAGC TATCTCCTTT 360 361 GATGCTAAAG ACTTTCTACA TATTAAAGAG AAATATAACA ATGATTGGTG GATAGGAAGG 420 421 CTGGTGAAAG AGGGCTGTGA AATTGGCTTC ATTCCAAGTC CACTCAGATT GGAGAACATA 480 481 CGGATCCAGC AAGAACAAAA AAGAGGACGT TTTCACGGAG GGAAATCAAG TGGAAATTCT 540 541 TCTTCAAGTC TTGGAGAAAT GGTATCTGGG ACATTCCGAG CAACTCCCAC ATCAACAGCA 600 601 AAACAGAAGC AAAAAGTGAC GGAGCACATT CCTCCTTACG ATGTTGTACC GTCAATGCGT 660 661 CCGGTGGTGT TAGTGGGGCC GTCACTGAAA GGTTACGAGG TAACAGACAT GATGCAGAAA 720 721 GCCCTCTTTG ATTTCCTGAA GCACAGGTTT GATGGGAGGA TTTCAATAAC GAGAGTGACA 780 781 GCTGACATTT CTCTTGCTAA GAGGTCTGTC CTAAATAATC CCAGCAAGAG AGCAATAATT 840 841 GAACGTTCGA ACACCCGGTC CAGCTTAGCG GAAGTACAAA GTGAAATTGA AAGAATCTTT 900 901 GAGTTGGCAA GATCTTTGCA ACTGGTTGTT CTTGATGCAG ACACCATCAA TCACCCAGCA 960 961 CAACTTATAA AGACTTCCTT AGCACCAATT ATTGTTCATG TAAAAGTCTC ATCTCCAAAG 1020 1021 GTTTTACAGC GGTTGATTAA ATCTAGAGGA AAGTCACAAA GTAAACACTT GAATGTTCAA 1080 1081 CTGGTGGCAG CTGATAAACT TGCACAATGC CCCCCAAGTC AGCGAATGAG GCACAGCAAC 1140 1141 CACTCCACAG AGAACTCTCC AATTGAAAGA CGAAGTCTAA TGACCTCTGA TGAAAATTAT 1200 1201 CACAATGAAA GGGCTCGGAA GAGTAGGAAC CGCTTGTCTT CCAGTTCTCA GCATAGCCGA 1260 1261 GATCATTACC CTCTTGTGGA AGAAGATTAC CCTGACTCAT ACCAGGACAC TTACAAACCC 1320 1321 CATAGGAACC GAGGATCACC TGGGGGATAT AGCCATGACT CCCGACATAG GCTTTGA 1377 |
▼ KEYWORD
ID | Family |
3D-structure | |
Alternative splicing | |
Calcium | |
Calcium channel | |
Calcium transport | |
Complete proteome | |
Disease mutation | |
Epilepsy | |
Ion channel | |
Ion transport | |
Methylation | |
Phosphoprotein | |
Reference proteome | |
SH3 domain | |
Transport | |
Voltage-gated channel
|
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Cytoplasmic side of plasma membrane | |
Cellular Component | Cytosol | |
Cellular Component | Plasma membrane | |
Cellular Component | Synapse | |
Cellular Component | Voltage-gated calcium channel complex | |
Molecular Function | High voltage-gated calcium channel activity | |
Biological Process | Cardiac conduction | |
Biological Process | Chemical synaptic transmission | |
Biological Process | Membrane depolarization | |
Biological Process | Neuromuscular junction development | |
Biological Process | Regulation of voltage-gated calcium channel activity |
▼ ANNOTATION
Disorder | ||||
IUPred2A |
Physicochemical | ||||
Compute pI/Mw | AAindex |
Function | ||||
CellMarker |
Localization | ||||
COMPARTMENTS |
Methylation | ||||
TCGA | ICGC | COSMIC | MethyCancer |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Pat-a1007 | Pan troglodytes | 100.0 | 0.0 | 1075 |
LLPS-Caf-a982 | Canis familiaris | 100.0 | 0.0 | 981 |
LLPS-Aon-a1007 | Aotus nancymaae | 100.0 | 0.0 | 1075 |
LLPS-Otg-a988 | Otolemur garnettii | 100.0 | 0.0 | 981 |
LLPS-Chs-a994 | Chlorocebus sabaeus | 100.0 | 0.0 | 978 |
LLPS-Maf-a1001 | Macaca fascicularis | 100.0 | 0.0 | 1075 |
LLPS-Caj-a993 | Callithrix jacchus | 100.0 | 0.0 | 1075 |
LLPS-Pap-a977 | Pan paniscus | 100.0 | 0.0 | 1075 |
LLPS-Eqc-a1001 | Equus caballus | 100.0 | 0.0 | 979 |
LLPS-Gog-a994 | Gorilla gorilla | 100.0 | 0.0 | 1075 |
LLPS-Man-a1005 | Macaca nemestrina | 100.0 | 0.0 | 1075 |
LLPS-Paa-a1005 | Papio anubis | 100.0 | 0.0 | 1075 |
LLPS-Mam-a987 | Macaca mulatta | 100.0 | 0.0 | 1075 |
LLPS-Cea-a1001 | Cercocebus atys | 100.0 | 0.0 | 1075 |
LLPS-Rhb-a992 | Rhinopithecus bieti | 99.81 | 0.0 | 1073 |
LLPS-Mup-a964 | Mustela putorius furo | 99.79 | 0.0 | 977 |
LLPS-Fec-a1001 | Felis catus | 99.61 | 0.0 | 1068 |
LLPS-Cap-a998 | Cavia porcellus | 99.42 | 0.0 | 1064 |
LLPS-Myl-a928 | Myotis lucifugus | 99.36 | 0.0 | 973 |
LLPS-Bot-a1004 | Bos taurus | 99.23 | 0.0 | 1068 |
LLPS-Sus-a1004 | Sus scrofa | 99.16 | 0.0 | 946 |
LLPS-Ran-a999 | Rattus norvegicus | 99.15 | 0.0 | 971 |
LLPS-Fud-a960 | Fukomys damarensis | 98.95 | 0.0 | 974 |
LLPS-Poa-a980 | Pongo abelii | 98.94 | 0.0 | 963 |
LLPS-Mod-a958 | Monodelphis domestica | 98.73 | 0.0 | 967 |
LLPS-Mum-a1005 | Mus musculus | 98.65 | 0.0 | 1059 |
LLPS-Mea-a958 | Mesocricetus auratus | 98.65 | 0.0 | 1061 |
LLPS-Sah-a901 | Sarcophilus harrisii | 98.51 | 0.0 | 543 |
LLPS-Anc-a902 | Anolis carolinensis | 98.0 | 0.0 | 1016 |
LLPS-Mal-a984 | Mandrillus leucophaeus | 96.52 | 0.0 | 967 |
LLPS-Ova-a962 | Ovis aries | 96.34 | 0.0 | 979 |
LLPS-Lac-a868 | Latimeria chalumnae | 94.96 | 0.0 | 920 |
LLPS-Gaga-a897 | Gallus gallus | 92.93 | 0.0 | 888 |
LLPS-Ict-a989 | Ictidomys tridecemlineatus | 92.04 | 0.0 | 961 |
LLPS-Leo-a857 | Lepisosteus oculatus | 91.73 | 0.0 | 944 |
LLPS-Scf-a840 | Scleropages formosus | 91.68 | 0.0 | 899 |
LLPS-Fia-a874 | Ficedula albicollis | 91.58 | 0.0 | 885 |
LLPS-Xet-a848 | Xenopus tropicalis | 90.53 | 0.0 | 835 |
LLPS-Urm-a894 | Ursus maritimus | 90.41 | 0.0 | 854 |
LLPS-Loa-a971 | Loxodonta africana | 88.91 | 0.0 | 928 |
LLPS-Orc-a933 | Oryctolagus cuniculus | 88.26 | 0.0 | 850 |
LLPS-Dar-a871 | Danio rerio | 87.14 | 0.0 | 886 |
LLPS-Asm-a861 | Astyanax mexicanus | 86.76 | 0.0 | 889 |
LLPS-Orn-a863 | Oreochromis niloticus | 86.21 | 0.0 | 910 |
LLPS-Tar-a824 | Takifugu rubripes | 85.6 | 0.0 | 906 |
LLPS-Xim-a870 | Xiphophorus maculatus | 85.06 | 0.0 | 902 |
LLPS-Ten-a821 | Tetraodon nigroviridis | 84.39 | 0.0 | 807 |
LLPS-Tag-a856 | Taeniopygia guttata | 83.94 | 0.0 | 602 |
LLPS-Gaa-a841 | Gasterosteus aculeatus | 82.06 | 0.0 | 866 |
LLPS-Orl-a851 | Oryzias latipes | 80.93 | 0.0 | 797 |
LLPS-Icp-a871 | Ictalurus punctatus | 80.34 | 0.0 | 814 |
LLPS-Scm-a829 | Scophthalmus maximus | 80.07 | 0.0 | 858 |
LLPS-Pof-a861 | Poecilia formosa | 79.11 | 0.0 | 853 |
LLPS-Ora-a821 | Ornithorhynchus anatinus | 69.16 | 0.0 | 586 |
LLPS-Pes-a854 | Pelodiscus sinensis | 68.08 | 2e-130 | 392 |
LLPS-Dio-a962 | Dipodomys ordii | 66.27 | 0.0 | 617 |
LLPS-Cas-a862 | Carlito syrichta | 63.98 | 0.0 | 614 |
LLPS-Aim-a955 | Ailuropoda melanoleuca | 61.97 | 0.0 | 543 |
LLPS-Nol-a975 | Nomascus leucogenys | 54.13 | 8e-161 | 479 |