LLPS-Hos-0618
PRMT5

▼ OVERVIEW


Status: Reviewed
Protein Name: Protein arginine N-methyltransferase 5; 72 kDa ICln-binding protein; Histone-arginine N-methyltransferase PRMT5; Jak-binding protein 1; Shk1 kinase-binding protein 1 homolog; SKB1 homolog; SKB1Hs
Gene Name: PRMT5, HRMT1L5, IBP72, JBP1, SKB1
Ensembl Gene: ENSG00000100462.15
Ensembl Protein: ENSP00000452218.1
Organism: Homo sapiens
Taxa ID: 9606
LLPS Type: Regulator
PDB: 5FA5 (A, B, C) More


▼ PROPERTY



——— Disorder propensity (calculated by IUPred2A)

▼ Classification


Condensates:
CondensateDescriptionTissue/CellPMIDs
P-body
"...Depletion of PRMT5 caused decreased symmetric arginine dimethylation of WT Lsm4, as monitored with the Sym10 antibody. When HeLa cells were depleted of PRMT5 with two different siRNAs, visible PBs were strongly reduced, as monitored with two different PB markers, compared to those in cells treated with a control siRNA. This demonstrates that PRMT5 is important for PB accumulation and, together with the Lsm4 mutational studies, suggests that symmetric arginine dimethylation of the Lsm4 C-terminal RGG domain contributes to this effect."
HeLa cells27247266
Stress granule
"...Here, we examined the potent SG-nucleating protein Ras-GAP SH3-binding protein 1, and found that G3BP1 is differentially methylated on specific arginine residues by protein arginine methyltransferase 1 and PRMT5 in its RGG domain. Several genetic and biochemical interventions that increased methylation repressed SG assembly, whereas interventions that decreased methylation promoted SG assembly."
U2OS cells27601476
Stress granule
"...PRMT5 helps eliminate stress granules by autophagy."
HeLa cells30022074
Stress granule
"...By adding known stress granule components not identified by mass spectrometry to this list, we created the first stress granule proteome for a mammalian cell."
U2OS cells26777405
Postsynaptic density
"...We report the first direct comparison of the proteome of triplicate isolates of mouse and human cortical postsynaptic densities. The mouse postsynaptic density comprised 1556 proteins and the human one 1461."
Human cortex23071613

▼ FUNCTION


Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA (PubMed:10531356, PubMed:11152681, PubMed:11747828, PubMed:12411503, PubMed:15737618, PubMed:17709427, PubMed:20159986, PubMed:20810653, PubMed:21258366, PubMed:21917714, PubMed:22269951, PubMed:21081503). Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles (PubMed:12411503, PubMed:11747828, PubMed:17709427). Methylates SUPT5H and may regulate its transcriptional elongation properties (PubMed:12718890). Mono- and dimethylates arginine residues of myelin basic protein (MBP) in vitro. May play a role in cytokine-activated transduction pathways. Negatively regulates cyclin E1 promoter activity and cellular proliferation. Methylates histone H2A and H4 'Arg-3' during germ cell development. Methylates histone H3 'Arg-8', which may repress transcription. Methylates the Piwi proteins (PIWIL1, PIWIL2 and PIWIL4), methylation of Piwi proteins being required for the interaction with Tudor domain-containing proteins and subsequent localization to the meiotic nuage (By similarity). Methylates RPS10. Attenuates EGF signaling through the MAPK1/MAPK3 pathway acting at 2 levels. First, monomethylates EGFR; this enhances EGFR 'Tyr-1197' phosphorylation and PTPN6 recruitment, eventually leading to reduced SOS1 phosphorylation (PubMed:21917714, PubMed:21258366). Second, methylates RAF1 and probably BRAF, hence destabilizing these 2 signaling proteins and reducing their catalytic activity (PubMed:21917714). Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation. Methylates HOXA9 (PubMed:22269951). Methylates and regulates SRGAP2 which is involved in cell migration and differentiation (PubMed:20810653). Acts as a transcriptional corepressor in CRY1-mediated repression of the core circadian component PER1 by regulating the H4R3 dimethylation at the PER1 promoter (By similarity). Methylates GM130/GOLGA2, regulating Golgi ribbon formation (PubMed:20421892). Methylates H4R3 in genes involved in glioblastomagenesis in a CHTOP- and/or TET1-dependent manner (PubMed:25284789). Symmetrically methylates POLR2A, a modification that allows the recruitment to POLR2A of proteins including SMN1/SMN2 and SETX. This is required for resolving RNA-DNA hybrids created by RNA polymerase II, that form R-loop in transcription terminal regions, an important step in proper transcription termination (PubMed:26700805). Along with LYAR, binds the promoter of gamma-globin HBG1/HBG2 and represses its expression (PubMed:25092918). Symmetrically methylates NCL (PubMed:21081503). Methylates TP53; methylation might possibly affect TP53 target gene specificity (PubMed:19011621).

▼ SEQUENCE


Protein Sequence (FASTA)
1     MAAMAVGGAG  GSRVSSGRDL  NCVPEIADTL  GAVAKQGFDF  LCMPVFHPRF  KREFIQEPAK  60
61    NRPGPQTRSD  LLLSGRDWNT  LIVGKLSPWI  RPDSKVEKIR  RNSEAAMLQE  LNFGAYLGLP  120
121   AFLLPLNQED  NTNLARVLTN  HIHTGHHSSM  FWMRVPLVAP  EDLRDDIIEN  APTTHTEEYS  180
181   GEEKTWMWWH  NFRTLCDYSK  RIAVALEIGA  DLPSNHVIDR  WLGEPIKAAI  LPTSIFLTNK  240
241   KGFPVLSKMH  QRLIFRLLKL  EVQFIITGTN  HHSEKEFCSY  LQYLEYLSQN  RPPPNAYELF  300
301   AKGYEDYLQS  PLQPLMDNLE  SQTYEVFEKD  PIKYSQYQQA  IYKCLLDRVP  EEEKDTNVQV  360
361   LMVLGAGRGP  LVNASLRAAK  QADRRIKLYA  VEKNPNAVVT  LENWQFEEWG  SQVTVVSSDM  420
421   REWVAPEKAD  IIVSELLGSF  ADNELSPECL  DGAQHFLKDD  GVSIPGEYTS  FLAPISSSKL  480
481   YNEVRACREK  DRDPEAQFEM  PYVVRLHNFH  QLSAPQPCFT  FSHPNRDPMI  DNNRYCTLEF  540
541   PVEVNTVLHG  FAGYFETVLY  QDITLSIRPE  THSPGMFSWF  PILFPIKQPI  TVREGQTICV  600
601   RFWRCSNSKK  VWYEWAVTAP  VCSAIHNPTG  RSYTIGL  637
Nucleotide CDS Sequence (FASTA)
1     ATGCGGGGTC  CGAACTCGGG  GACGGAGAAG  GGCAGACTAG  TCATCCCGGA  GAAGCAGGGG  60
61    TTTGATTTCC  TCTGCATGCC  TGTCTTCCAT  CCGCGTTTCA  AGAGGGAGTT  CATTCAGGAA  120
121   CCTGCTAAGA  ATCGGCCCGG  TCCCCAGACA  CGATCAGACC  TACTGCTGTC  AGGAAGGGCT  180
181   TTCCTGCTGC  CCCTTAATCA  GGAAGATAAC  ACCAACCTGG  CCAGAGTTTT  GACCAACCAC  240
241   ATCCACACTG  GCCATCACTC  TTCCATGTTC  TGGATGCGGG  TACCCTTGGT  GGCACCAGAG  300
301   GACCTGAGAG  ATGATATAAT  TGAGAATGCA  CCAACTACAC  ACACAGAGGA  GTACAGTGGG  360
361   GAGGAGAAAA  CGTGGATGTG  GTGGCACAAC  TTCCGGACTT  TGTGTGACTA  TAGTAAGAGG  420
421   ATTGCAGTGG  CTCTTGAAAT  TGGGGCTGAC  CTCCCATCTA  ATCATGTCAT  TGATCGCTGG  480
481   CTTGGGGAGC  CCATCAAAGC  AGCCATTCTC  CCCACTAGCA  TTTTCCTGAC  CAATAAGAAG  540
541   GGATTTCCTG  TTCTTTCTAA  GATGCACCAG  AGGCTCATCT  TCCGGCTCCT  CAAGTTGGAG  600
601   GTGCAGTTCA  TCATCACAGG  CACCAACCAC  CACTCAGAGA  AGGAGTTCTG  CTCCTACCTC  660
661   CAATACCTGG  AATACTTAAG  CCAGAACCGT  CCTCCACCTA  ATGCCTATGA  ACTCTTTGCC  720
721   AAGGGCTATG  AAGACTATCT  GCAGTCCCCG  CTTCAGCCAC  TGATGGACAA  TCTGGAATCT  780
781   CAGACATATG  AAGTGTTTGA  AAAGGACCCC  ATCAAATACT  CTCAGTACCA  GCAGGCCATC  840
841   TATAAATGTC  TGCTAGACCG  AGTACCAGAA  GAGGAGAAGG  ATACCAATGT  CCAGGTACTG  900
901   ATGGTGCTGG  GAGCAGGACG  GGGACCCCTG  GTGAACGCTT  CCCTGCGGGC  AGCCAAGCAG  960
961   GCCGACCGGC  GGATAAAGCT  GTATGCTGTG  GAGAAAAACC  CAAATGCCGT  GGTGACGCTA  1020
1021  GAGAACTGGC  AGTTTGAAGA  ATGGGGAAGC  CAAGTGACCG  TAGTCTCATC  AGACATGAGG  1080
1081  GAATGGGTGG  CTCCAGAGAA  AGCAGACATC  ATTGTCAGTG  AGCTTCTGGG  CTCATTTGCT  1140
1141  GACAATGAAT  TGTCGCCTGA  GTGCCTGGAT  GGAGCCCAGC  ACTTCCTAAA  AGATGATGGT  1200
1201  GTGAGCATCC  CCGGGGAGTA  CACTTCCTTT  CTGGCTCCCA  TCTCTTCCTC  CAAGCTGTAC  1260
1261  AATGAGGTCC  GAGCCTGTAG  GGAGAAGGAC  CGTGACCCTG  AGGCCCAGTT  TGAGATGCCT  1320
1321  TATGTGGTAC  GGCTGCACAA  CTTCCACCAG  CTCTCTGCAC  CCCAGCCCTG  TTTCACCTTC  1380
1381  AGCCATCCCA  ACAGAGATCC  TATGATTGAC  AACAACCGCT  ATTGCACCTT  GGAATTTCCT  1440
1441  GTGGAGGTGA  ACACAGTACT  ACATGGCTTT  GCCGGCTACT  TTGAGACTGT  GCTTTATCAG  1500
1501  GACATCACTC  TGAGTATCCG  TCCAGAGACT  CACTCTCCTG  GGATGTTCTC  ATGGTTTCCC  1560
1561  ATCCTCTTCC  CTATTAAGCA  GCCCATAACG  GTACGTGAAG  GCCAAACCAT  CTGTGTGCGT  1620
1621  TTCTGGCGAT  GCAGCAATTC  CAAGAAGGTG  TGGTATGAGT  GGGCTGTGAC  AGCACCAGTC  1680
1681  TGTTCTGCTA  TTCATAACCC  CACAGGCCGC  TCATATACCA  TTGGCCTCTA  G  1731

▼ KEYWORD


ID
Family
3D-structure
Acetylation
Alternative splicing
Biological rhythms
Chromatin regulator
Complete proteome
Cytoplasm
Direct protein sequencing
Golgi apparatus
Methyltransferase
Nucleus
Reference proteome
Repressor
S-adenosyl-L-methionine
Transcription
Transcription regulation
Transferase

▼ GENE ONTOLOGY


ID
Classification
Description
Cellular Component
Cytoplasm
Cellular Component
Cytosol
Cellular Component
Golgi apparatus
Cellular Component
Histone methyltransferase complex
Cellular Component
Methylosome
Cellular Component
Nucleoplasm
Cellular Component
Nucleus
Molecular Function
E-box binding
Molecular Function
Histone methyltransferase activity (H4-R3 specific)
Molecular Function
Histone-arginine N-methyltransferase activity
Molecular Function
Identical protein binding
Molecular Function
Methyl-CpG binding
Molecular Function
Methyltransferase activity
Molecular Function
P53 binding
Molecular Function
Protein heterodimerization activity
Molecular Function
Protein-arginine N-methyltransferase activity
Molecular Function
Protein-arginine omega-N symmetric methyltransferase activity
Molecular Function
Ribonucleoprotein complex binding
Molecular Function
Transcription corepressor activity
Biological Process
Circadian regulation of gene expression
Biological Process
DNA-templated transcription, termination
Biological Process
Endothelial cell activation
Biological Process
Golgi ribbon formation
Biological Process
Histone arginine methylation
Biological Process
Histone H4-R3 methylation
Biological Process
Liver regeneration
Biological Process
Negative regulation of cell differentiation
Biological Process
Peptidyl-arginine methylation
Biological Process
Peptidyl-arginine N-methylation
Biological Process
Positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway
Biological Process
Positive regulation of oligodendrocyte differentiation
Biological Process
Regulation of DNA methylation
Biological Process
Regulation of ERK1 and ERK2 cascade
Biological Process
Regulation of mitotic nuclear division
Biological Process
Regulation of signal transduction by p53 class mediator
Biological Process
Spliceosomal snRNP assembly

▼ KEGG



▼ ORTHOLOGY


DrLLPS IDOrganismIdentityE-valueScore
LLPS-Paa-1254Papio anubis100.00.01296
LLPS-Gog-0149Gorilla gorilla100.00.01296
LLPS-Cas-0265Carlito syrichta100.00.01261
LLPS-Pap-1578Pan paniscus100.00.01261
LLPS-Pat-0966Pan troglodytes100.00.01261
LLPS-Man-2564Macaca nemestrina100.00.01297
LLPS-Chs-0486Chlorocebus sabaeus99.840.01295
LLPS-Poa-1903Pongo abelii99.840.01295
LLPS-Mal-1962Mandrillus leucophaeus99.830.01258
LLPS-Maf-0042Macaca fascicularis99.830.01258
LLPS-Cea-0799Cercocebus atys99.830.01258
LLPS-Mup-3238Mustela putorius furo99.520.01291
LLPS-Aon-2172Aotus nancymaae99.520.01293
LLPS-Caj-2555Callithrix jacchus99.520.01291
LLPS-Ict-2113Ictidomys tridecemlineatus99.520.01290
LLPS-Fec-0660Felis catus99.520.01291
LLPS-Urm-2098Ursus maritimus99.520.01291
LLPS-Tut-0450Tursiops truncatus99.50.01250
LLPS-Bot-0625Bos taurus99.350.01291
LLPS-Ova-0382Ovis aries99.350.01291
LLPS-Eqc-0130Equus caballus99.350.01290
LLPS-Caf-0303Canis familiaris99.350.01291
LLPS-Otg-0110Otolemur garnettii99.350.01291
LLPS-Aim-2349Ailuropoda melanoleuca99.190.01290
LLPS-Cap-3222Cavia porcellus99.190.01287
LLPS-Loa-1157Loxodonta africana99.190.01287
LLPS-Sus-2626Sus scrofa99.160.01232
LLPS-Myl-3059Myotis lucifugus99.030.01289
LLPS-Dio-2685Dipodomys ordii98.870.01283
LLPS-Fud-1857Fukomys damarensis98.710.01281
LLPS-Orc-2162Oryctolagus cuniculus98.550.01283
LLPS-Mam-1811Macaca mulatta98.210.01251
LLPS-Rhb-2129Rhinopithecus bieti98.210.01251
LLPS-Mum-1487Mus musculus97.90.01271
LLPS-Nol-0930Nomascus leucogenys97.90.01254
LLPS-Ran-1579Rattus norvegicus97.740.01271
LLPS-Mod-0908Monodelphis domestica95.640.01247
LLPS-Sah-0320Sarcophilus harrisii94.590.01183
LLPS-Ora-2124Ornithorhynchus anatinus89.472e-129 397
LLPS-Anc-0448Anolis carolinensis85.160.01116
LLPS-Xet-2625Xenopus tropicalis84.190.01129
LLPS-Lac-0169Latimeria chalumnae83.580.0 976
LLPS-Leo-1656Lepisosteus oculatus79.837e-59 199
LLPS-Scf-2089Scleropages formosus79.810.01061
LLPS-Asm-0720Astyanax mexicanus79.810.01060
LLPS-Orn-0808Oreochromis niloticus79.480.01056
LLPS-Xim-0596Xiphophorus maculatus79.320.01058
LLPS-Pof-1963Poecilia formosa79.00.01058
LLPS-Dar-2641Danio rerio79.00.01046
LLPS-Icp-2781Ictalurus punctatus78.680.01045
LLPS-Gaa-1151Gasterosteus aculeatus78.350.01040
LLPS-Orl-2141Oryzias latipes78.350.01039
LLPS-Ten-0432Tetraodon nigroviridis78.350.01050
LLPS-Scm-0582Scophthalmus maximus78.190.01040
LLPS-Tar-1160Takifugu rubripes72.780.0 962
LLPS-Meg-2279Meleagris gallopavo72.222e-31 122
LLPS-Coc-0442Corchorus capsularis69.323e-34 130
LLPS-Gaga-0042Gallus gallus58.123e-31 123
LLPS-Cii-1029Ciona intestinalis51.820.0 651
LLPS-Via-0079Vigna angularis49.440.0 583
LLPS-Vir-0993Vigna radiata49.240.0 543
LLPS-Phv-1208Phaseolus vulgaris48.790.0 573
LLPS-Glm-1282Glycine max48.630.0 572
LLPS-Sob-0482Sorghum bicolor48.560.0 574
LLPS-Sei-0761Setaria italica48.330.0 578
LLPS-Lep-0834Leersia perrieri48.280.0 581
LLPS-Tra-0128Triticum aestivum48.10.0 581
LLPS-Mua-1482Musa acuminata48.070.0 549
LLPS-Brd-0612Brachypodium distachyon47.850.0 568
LLPS-Hov-0748Hordeum vulgare47.780.0 570
LLPS-Org-1142Oryza glaberrima47.720.0 578
LLPS-Ors-0541Oryza sativa47.720.0 578
LLPS-Orbr-1438Oryza brachyantha47.720.0 582
LLPS-Php-0614Physcomitrella patens47.610.0 571
LLPS-Nia-1149Nicotiana attenuata47.540.0 576
LLPS-Art-2120Arabidopsis thaliana47.360.0 565
LLPS-Viv-0349Vitis vinifera47.290.0 572
LLPS-Prp-0360Prunus persica47.150.0 577
LLPS-Arl-1465Arabidopsis lyrata47.120.0 561
LLPS-Brn-0505Brassica napus47.120.0 574
LLPS-Tru-1384Triticum urartu47.120.0 553
LLPS-Brr-2383Brassica rapa47.120.0 572
LLPS-Bro-0554Brassica oleracea46.880.0 569
LLPS-Sem-0040Selaginella moellendorffii46.620.0 561
LLPS-Met-0698Medicago truncatula46.570.0 551
LLPS-Mae-1072Manihot esculenta46.520.0 566
LLPS-Sol-1680Solanum lycopersicum46.280.0 558
LLPS-Chc-0345Chondrus crispus46.080.0 543
LLPS-Amt-0332Amborella trichopoda45.890.0 550
LLPS-Abg-1003Absidia glauca45.850.0 551
LLPS-Hea-1061Helianthus annuus45.820.0 558
LLPS-Gor-0339Gossypium raimondii45.570.0 549
LLPS-Pot-0794Populus trichocarpa45.480.0 548
LLPS-Thc-0586Theobroma cacao45.250.0 546
LLPS-Cus-0571Cucumis sativus44.860.0 538
LLPS-Ori-0676Oryza indica44.788e-165 492
LLPS-Orp-0505Oryza punctata44.692e-171 509
LLPS-Zem-0028Zea mays44.593e-179 532
LLPS-Dac-0792Daucus carota44.460.0 535
LLPS-Orm-0569Oryza meridionalis44.385e-170 506
LLPS-Usm-0303Ustilago maydis43.765e-119 379
LLPS-Crn-0252Cryptococcus neoformans43.01e-114 370
LLPS-Map-0456Magnaporthe poae42.865e-1887.8
LLPS-Orb-1542Oryza barthii42.264e-164 492
LLPS-Orni-0479Oryza nivara42.264e-164 492
LLPS-Orr-0037Oryza rufipogon42.115e-164 491
LLPS-Blg-0864Blumeria graminis42.058e-1479.0
LLPS-Pytr-1046Pyrenophora triticirepentis42.03e-88 298
LLPS-Phn-0208Phaeosphaeria nodorum41.759e-87 294
LLPS-Chr-0175Chlamydomonas reinhardtii41.74e-158 479
LLPS-Orgl-1122Oryza glumaepatula41.288e-160 481
LLPS-Miv-0667Microbotryum violaceum40.914e-132 413
LLPS-Drm-0147Drosophila melanogaster40.588e-139 426
LLPS-Osl-0306Ostreococcus lucimarinus39.551e-121 379
LLPS-Put-0042Puccinia triticina39.334e-82 275
LLPS-Pug-0420Puccinia graminis38.382e-104 342
LLPS-Gas-0383Galdieria sulphuraria37.845e-135 417
LLPS-Scp-0983Schizosaccharomyces pombe37.714e-117 370
LLPS-Mel-0778Melampsora laricipopulina37.76e-108 348
LLPS-Scc-0416Schizosaccharomyces cryophilus37.335e-113 359
LLPS-Spr-0978Sporisorium reilianum37.287e-122 391
LLPS-Tum-0849Tuber melanosporum37.276e-126 394
LLPS-Asni-0847Aspergillus niger37.187e-109 351
LLPS-Scj-0634Schizosaccharomyces japonicus36.933e-124 389
LLPS-Yal-0367Yarrowia lipolytica35.644e-110 357
LLPS-Fuo-0332Fusarium oxysporum34.921e-91 306
LLPS-Fus-0097Fusarium solani34.828e-95 315
LLPS-Aso-0504Aspergillus oryzae34.642e-96 321
LLPS-Asf-1071Aspergillus flavus34.644e-96 321
LLPS-Asfu-0724Aspergillus fumigatus34.556e-106 347
LLPS-Nef-0257Neosartorya fischeri34.553e-107 350
LLPS-Ved-0647Verticillium dahliae34.272e-93 311
LLPS-Pyt-0374Pyrenophora teres34.18e-91 304
LLPS-Cae-0617Caenorhabditis elegans34.061e-96 319
LLPS-Dos-0139Dothistroma septosporum33.853e-112 360
LLPS-Fuv-0193Fusarium verticillioides33.83e-93 311
LLPS-Beb-0007Beauveria bassiana33.382e-96 320
LLPS-Trr-0450Trichoderma reesei33.338e-95 315
LLPS-Coo-0561Colletotrichum orbiculare32.818e-87 293
LLPS-Asn-0377Aspergillus nidulans32.818e-99 328
LLPS-Asc-0280Aspergillus clavatus32.694e-97 323
LLPS-Asg-0253Ashbya gossypii32.517e-66 236
LLPS-Cogr-0495Colletotrichum graminicola32.411e-96 320
LLPS-Zyt-0742Zymoseptoria tritici32.394e-102 334
LLPS-Lem-1201Leptosphaeria maculans32.256e-99 327
LLPS-Cog-0105Colletotrichum gloeosporioides31.816e-98 323
LLPS-Scs-0480Sclerotinia sclerotiorum31.492e-93 312
LLPS-Ast-0030Aspergillus terreus31.42e-73 258
LLPS-Gag-0220Gaeumannomyces graminis31.356e-88 297
LLPS-Nec-0518Neurospora crassa31.23e-94 314
LLPS-Trv-0541Trichoderma virens30.81e-93 312
LLPS-Mao-0881Magnaporthe oryzae30.787e-86 291
LLPS-Kop-0391Komagataella pastoris30.192e-73 257
LLPS-Sac-0321Saccharomyces cerevisiae27.253e-68 244
LLPS-Sot-0117Solanum tuberosum27.18e-0755.8