LLPS-Dar-3576
pdlim4
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | PDZ and LIM domain 4 |
Gene Name: | pdlim4 |
Ensembl Gene: | ENSDARG00000068973.5 |
Ensembl Protein: | ENSDARP00000090750.4 |
Organism: | Danio rerio |
Taxa ID: | 7955 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Nucleolus, Stress granule | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | ENSDART00000099978.5 | ENSDARP00000090750.4 |
UniProt | Q0PWB9, Q0PWB9_DANRE | |
GeneBank | BC133974, CU651601, CR792441, DQ679227 | , ABG74895.1, AAI33975.1 |
RefSeq | NM_001042696.2 | NP_001036161.1 |
Entrez | 569404 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MSHTVTLSGP SPWGFRLVGG RDFSTPLTIS RITPASKAAQ SNLSPGDTIL AINGESTESM 60 61 THMEAQNRIK ACTDQLVLAI CRSGKAWSPT GMEELKTSPF SPTLESDSQT FRPISSGYSP 120 121 TPKSPSPKSP ITGAVPYNNG GSRPVYNNPA GLYSHNNGNG ALPKQMSGLS LGSPHSFSPE 180 181 PPVNSSGNRN GFDTQSDVYR MLLDYEEPVS APKQSGSFKY LQGILEAEDG GVSPVDRSGV 240 241 RGLRSPVKSP VPKLGSPITA PLAPIPGLQN LPQCTRCANG IVGVIVKARD KLYHPDCFMC 300 301 DDCGLNLKQR GYFFIDDNLY CETHAKARVQ PPEGYDVVAV YPNSKVELV 349 |
Nucleotide CDS Sequence (FASTA) |
1 ATGTCTCACA CTGTGACTCT CAGCGGTCCC TCGCCCTGGG GTTTTCGGCT GGTGGGTGGA 60 61 CGAGACTTCA GCACACCGCT CACCATTTCC AGAATAACAC CTGCGAGCAA AGCGGCGCAG 120 121 AGCAACCTGA GTCCTGGAGA CACCATCCTG GCCATCAATG GAGAAAGCAC AGAGAGCATG 180 181 ACGCACATGG AGGCTCAGAA CCGCATTAAA GCCTGCACAG ATCAGCTGGT GCTGGCCATC 240 241 TGCAGATCTG GCAAGGCTTG GTCTCCAACT GGAATGGAAG AACTCAAGAC AAGTCCATTC 300 301 AGCCCAACAC TGGAGTCTGA TTCACAGACT TTCCGACCAA TCAGCAGTGG CTACAGTCCA 360 361 ACTCCCAAAA GTCCGTCGCC CAAGAGCCCA ATCACTGGTG CTGTGCCTTA CAACAATGGT 420 421 GGATCCAGAC CAGTGTACAA CAACCCAGCA GGACTTTATT CCCACAACAA CGGCAACGGT 480 481 GCCCTGCCGA AGCAGATGTC AGGCCTCAGC CTGGGCTCTC CTCACAGTTT TAGCCCTGAG 540 541 CCGCCAGTGA ATTCATCAGG CAACCGCAAC GGTTTCGACA CACAGTCTGA CGTCTACAGG 600 601 ATGCTCCTGG ACTATGAGGA ACCGGTTTCA GCTCCCAAAC AATCCGGCTC CTTTAAATAC 660 661 CTGCAGGGAA TCCTGGAAGC TGAGGATGGG GGAGTCTCGC CGGTGGACAG ATCTGGGGTC 720 721 AGAGGCTTGC GTTCCCCTGT TAAATCACCC GTGCCGAAGC TGGGCAGCCC TATTACAGCC 780 781 CCTCTGGCAC CCATTCCTGG CCTACAGAAC CTTCCTCAGT GCACACGCTG CGCAAACGGC 840 841 ATTGTGGGAG TCATCGTGAA GGCCCGAGAC AAGCTCTACC ACCCCGACTG CTTCATGTGT 900 901 GACGACTGCG GCCTCAACCT GAAGCAGAGA GGATATTTCT TCATCGATGA CAATCTGTAT 960 961 TGTGAGACCC ACGCCAAGGC CCGCGTCCAG CCTCCTGAGG GCTACGACGT AGTGGCCGTT 1020 1021 TATCCCAACT CTAAAGTGGA ACTGGTCTAA 1050 |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Scf-2474 | Scleropages formosus | 72.24 | 5e-168 | 479 |
LLPS-Leo-0152 | Lepisosteus oculatus | 69.6 | 6e-166 | 474 |
LLPS-Pof-0376 | Poecilia formosa | 67.91 | 7e-164 | 470 |
LLPS-Xim-1481 | Xiphophorus maculatus | 66.84 | 4e-162 | 465 |
LLPS-Tar-0427 | Takifugu rubripes | 66.67 | 5e-163 | 468 |
LLPS-Scm-3301 | Scophthalmus maximus | 66.14 | 5e-161 | 463 |
LLPS-Gaa-2633 | Gasterosteus aculeatus | 64.25 | 8e-142 | 414 |
LLPS-Ten-0640 | Tetraodon nigroviridis | 64.04 | 9e-152 | 438 |
LLPS-Orl-1196 | Oryzias latipes | 63.71 | 3e-145 | 421 |
LLPS-Fia-3505 | Ficedula albicollis | 61.95 | 3e-40 | 151 |
LLPS-Asm-3908 | Astyanax mexicanus | 61.25 | 1e-23 | 106 |
LLPS-Meg-0440 | Meleagris gallopavo | 60.98 | 5e-26 | 111 |
LLPS-Tag-1438 | Taeniopygia guttata | 60.76 | 1e-24 | 107 |
LLPS-Lac-1109 | Latimeria chalumnae | 60.0 | 5e-24 | 105 |
LLPS-Icp-2876 | Ictalurus punctatus | 59.76 | 1e-24 | 108 |
LLPS-Anc-2530 | Anolis carolinensis | 59.55 | 1e-129 | 381 |
LLPS-Orn-0678 | Oreochromis niloticus | 59.26 | 8e-33 | 130 |
LLPS-Sah-2629 | Sarcophilus harrisii | 58.29 | 1e-123 | 367 |
LLPS-Xet-2294 | Xenopus tropicalis | 58.24 | 1e-125 | 372 |
LLPS-Pes-3593 | Pelodiscus sinensis | 57.68 | 1e-115 | 344 |
LLPS-Mod-1219 | Monodelphis domestica | 57.14 | 4e-121 | 361 |
LLPS-Gog-1601 | Gorilla gorilla | 56.1 | 1e-23 | 105 |
LLPS-Fud-4129 | Fukomys damarensis | 56.1 | 2e-23 | 103 |
LLPS-Gaga-1246 | Gallus gallus | 55.68 | 2e-124 | 368 |
LLPS-Mea-1934 | Mesocricetus auratus | 55.56 | 6e-23 | 102 |
LLPS-Otg-3205 | Otolemur garnettii | 54.88 | 3e-23 | 103 |
LLPS-Rhb-4027 | Rhinopithecus bieti | 54.88 | 4e-23 | 103 |
LLPS-Hos-2252 | Homo sapiens | 54.88 | 3e-23 | 103 |
LLPS-Pat-0474 | Pan troglodytes | 54.88 | 3e-23 | 103 |
LLPS-Pap-3350 | Pan paniscus | 54.88 | 4e-23 | 103 |
LLPS-Man-0308 | Macaca nemestrina | 54.88 | 3e-23 | 103 |
LLPS-Ict-2638 | Ictidomys tridecemlineatus | 54.88 | 2e-23 | 103 |
LLPS-Poa-2679 | Pongo abelii | 54.88 | 2e-23 | 103 |
LLPS-Mam-2137 | Macaca mulatta | 54.88 | 4e-23 | 103 |
LLPS-Caj-4495 | Callithrix jacchus | 54.88 | 4e-23 | 103 |
LLPS-Maf-1209 | Macaca fascicularis | 54.88 | 3e-23 | 103 |
LLPS-Mum-0821 | Mus musculus | 54.88 | 8e-23 | 102 |
LLPS-Chs-2271 | Chlorocebus sabaeus | 54.88 | 3e-23 | 103 |
LLPS-Aon-3433 | Aotus nancymaae | 54.88 | 4e-23 | 103 |
LLPS-Mal-3814 | Mandrillus leucophaeus | 54.88 | 3e-23 | 103 |
LLPS-Aim-1646 | Ailuropoda melanoleuca | 54.32 | 8e-22 | 100 |
LLPS-Anp-2854 | Anas platyrhynchos | 54.24 | 4e-117 | 349 |
LLPS-Sus-2231 | Sus scrofa | 54.11 | 2e-113 | 340 |
LLPS-Loa-2005 | Loxodonta africana | 54.08 | 4e-103 | 313 |
LLPS-Nol-3598 | Nomascus leucogenys | 54.06 | 1e-105 | 320 |
LLPS-Ran-0848 | Rattus norvegicus | 54.02 | 2e-23 | 103 |
LLPS-Ova-0041 | Ovis aries | 53.66 | 2e-22 | 102 |
LLPS-Caf-1489 | Canis familiaris | 53.22 | 2e-108 | 327 |
LLPS-Fec-2889 | Felis catus | 53.09 | 3e-106 | 322 |
LLPS-Eqc-2634 | Equus caballus | 52.87 | 9e-23 | 102 |
LLPS-Cea-0369 | Cercocebus atys | 52.71 | 2e-105 | 320 |
LLPS-Paa-2184 | Papio anubis | 52.71 | 2e-105 | 319 |
LLPS-Bot-1920 | Bos taurus | 52.71 | 5e-104 | 316 |
LLPS-Mup-0695 | Mustela putorius furo | 52.2 | 1e-109 | 330 |
LLPS-Myl-2390 | Myotis lucifugus | 51.99 | 1e-107 | 325 |
LLPS-Tut-1939 | Tursiops truncatus | 51.85 | 5e-20 | 95.1 |
LLPS-Urm-3018 | Ursus maritimus | 51.69 | 3e-20 | 94.0 |
LLPS-Ere-0823 | Erinaceus europaeus | 51.69 | 2e-21 | 96.7 |
LLPS-Dio-3256 | Dipodomys ordii | 48.52 | 4e-82 | 259 |
LLPS-Orc-3220 | Oryctolagus cuniculus | 47.67 | 7e-19 | 89.7 |
LLPS-Cap-4370 | Cavia porcellus | 45.87 | 5e-87 | 271 |
LLPS-Cas-2137 | Carlito syrichta | 44.38 | 5e-73 | 235 |
LLPS-Ora-2175 | Ornithorhynchus anatinus | 37.46 | 2e-61 | 206 |