LLPS-Dar-1924
pdlim1

▼ OVERVIEW

Status: Unreviewed
Protein Name: PDZ and LIM domain 1 (elfin)
Gene Name: pdlim1
Ensembl Gene: ENSDARG00000019845.9
Ensembl Protein: ENSDARP00000114036.1
Organism: Danio rerio
Taxa ID: 7955
LLPS Type: Others


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateEvidenceOrthologs
Nucleolus, Stress granulePredicted from orthologs(View)

▼ CROSS REFERENCE

▼ SEQUENCE

Protein Sequence (FASTA)
1     MPQRVVLQGP  GPWGFRLVGG  KDFEQPLTIS  RVTPGSKAAQ  ADLCMGDMIL  AIDGESTDGM  60
61    THLEAQNKIK  ACGDEMALSI  DRSESKMWSP  LVTEDGKTNP  YKMNLAKTNT  QEEKHIGSAH  120
121   NRSAMPFNSA  SPRVVTNQYN  NPAGLYSSEN  IKNFNSAVDE  VQTTAASSEA  SRNSDPSKPG  180
181   HTKAAIAADS  EVYKMLQENQ  ESNEPPRQSA  SFKVLQEILE  TGDSEKPSGF  RSVKAPTTKI  240
241   GASVGNPEKL  SLCDKCGSGI  VGMIVKLRDK  FRHPECYVCT  DCGINLKQKG  HFFVEDQIYC  300
301   EKHARERITP  PEGYDVVTVF  PK  322
Nucleotide CDS Sequence (FASTA)
1     ATGCCTCAGC  GGGTTGTTTT  ACAAGGTCCC  GGGCCATGGG  GATTCCGTCT  GGTCGGGGGT  60
61    AAAGATTTCG  AGCAGCCTCT  GACTATCTCG  AGGGTAACCC  CAGGAAGTAA  AGCAGCTCAG  120
121   GCTGACCTCT  GCATGGGGGA  CATGATCCTG  GCCATAGATG  GAGAGTCCAC  TGATGGCATG  180
181   ACCCATCTGG  AGGCACAGAA  TAAAATCAAA  GCCTGCGGGG  ATGAAATGGC  ACTTTCCATT  240
241   GACAGATCAG  AATCAAAAAT  GTGGTCGCCT  CTAGTCACTG  AAGACGGAAA  GACGAATCCA  300
301   TACAAGATGA  ATCTGGCAAA  AACCAACACA  CAGGAGGAGA  AGCATATAGG  CTCTGCTCAT  360
361   AACAGAAGTG  CTATGCCATT  TAATTCTGCC  AGTCCTAGAG  TCGTCACCAA  CCAGTACAAC  420
421   AACCCGGCTG  GCCTGTACTC  CTCTGAAAAC  ATCAAGAACT  TCAACAGCGC  AGTGGATGAA  480
481   GTCCAGACGA  CCGCTGCCTC  CAGTGAAGCT  AGCAGGAACT  CAGATCCCAG  TAAACCAGGC  540
541   CACACAAAAG  CTGCTATAGC  TGCAGATTCA  GAGGTGTACA  AAATGCTGCA  GGAGAATCAG  600
601   GAATCCAATG  AACCTCCTCG  CCAGTCGGCC  TCTTTTAAAG  TTCTGCAGGA  GATCCTGGAA  660
661   ACTGGTGATT  CAGAGAAACC  CTCAGGCTTC  AGAAGCGTCA  AGGCTCCTAC  CACAAAAATT  720
721   GGAGCTTCCG  TTGGGAATCC  TGAAAAGCTC  TCTCTTTGTG  ACAAATGTGG  ATCAGGGATT  780
781   GTAGGAATGA  TTGTCAAACT  TCGAGATAAG  TTTCGTCACC  CAGAATGCTA  CGTCTGCACA  840
841   GACTGCGGGA  TCAATCTGAA  GCAAAAAGGA  CACTTTTTTG  TTGAGGACCA  GATTTACTGC  900
901   GAGAAGCACG  CACGCGAACG  CATCACTCCT  CCAGAGGGTT  ATGATGTTGT  CACCGTTTTT  960
961   CCAAAATAG  969

▼ ANNOTATION

Disorder
D2P2IUPred2A
Interaction
RAINMIST
Physicochemical
AAindex

▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Asm-1342Astyanax mexicanus82.610.0 564
LLPS-Icp-1328Ictalurus punctatus80.80.0 523
LLPS-Orl-0995Oryzias latipes78.640.0 535
LLPS-Scf-2007Scleropages formosus78.40.0 533
LLPS-Tar-3373Takifugu rubripes78.40.0 532
LLPS-Leo-3123Lepisosteus oculatus77.850.0 518
LLPS-Scm-2967Scophthalmus maximus77.780.0 526
LLPS-Gaa-3457Gasterosteus aculeatus77.40.0 523
LLPS-Xim-0962Xiphophorus maculatus76.010.0 513
LLPS-Pof-0057Poecilia formosa75.690.0 514
LLPS-Ran-3156Rattus norvegicus73.564e-171 486
LLPS-Mum-0698Mus musculus73.311e-170 484
LLPS-Rhb-2191Rhinopithecus bieti72.424e-170 483
LLPS-Otg-3726Otolemur garnettii72.341e-170 484
LLPS-Loa-4218Loxodonta africana72.346e-171 485
LLPS-Cap-3837Cavia porcellus72.266e-172 488
LLPS-Paa-3780Papio anubis71.822e-168 479
LLPS-Fud-1390Fukomys damarensis71.824e-167 475
LLPS-Maf-1805Macaca fascicularis71.822e-168 479
LLPS-Mam-1495Macaca mulatta71.822e-168 479
LLPS-Man-1446Macaca nemestrina71.822e-168 479
LLPS-Nol-0975Nomascus leucogenys71.731e-169 482
LLPS-Pat-0483Pan troglodytes71.733e-170 483
LLPS-Sus-2267Sus scrofa71.655e-171 485
LLPS-Mea-0245Mesocricetus auratus71.657e-170 483
LLPS-Cea-4318Cercocebus atys71.528e-168 477
LLPS-Poa-0205Pongo abelii71.437e-170 483
LLPS-Hos-1467Homo sapiens71.436e-169 480
LLPS-Mup-1676Mustela putorius furo71.341e-170 484
LLPS-Eqc-4504Equus caballus71.344e-172 488
LLPS-Fec-4012Felis catus71.341e-172 489
LLPS-Cas-2137Carlito syrichta71.18e-149 428
LLPS-Lac-1672Latimeria chalumnae71.084e-171 485
LLPS-Aim-2250Ailuropoda melanoleuca71.042e-171 486
LLPS-Bot-1915Bos taurus70.951e-168 479
LLPS-Xet-2722Xenopus tropicalis70.955e-171 485
LLPS-Fia-3367Ficedula albicollis70.95e-152 437
LLPS-Ict-1002Ictidomys tridecemlineatus70.828e-168 477
LLPS-Gaga-1697Gallus gallus70.712e-149 431
LLPS-Caj-2480Callithrix jacchus70.614e-168 478
LLPS-Orc-3002Oryctolagus cuniculus70.522e-168 479
LLPS-Aon-1875Aotus nancymaae70.333e-147 424
LLPS-Mod-1065Monodelphis domestica69.883e-164 468
LLPS-Caf-0803Canis familiaris69.745e-134 389
LLPS-Sah-0762Sarcophilus harrisii69.672e-163 466
LLPS-Meg-0024Meleagris gallopavo69.461e-147 424
LLPS-Urm-0676Ursus maritimus69.332e-148 427
LLPS-Anc-2496Anolis carolinensis69.043e-158 452
LLPS-Anp-0183Anas platyrhynchos68.872e-149 430
LLPS-Chs-0398Chlorocebus sabaeus68.775e-130 379
LLPS-Ten-1656Tetraodon nigroviridis68.014e-153 439
LLPS-Ova-0197Ovis aries67.119e-146 420
LLPS-Gog-1302Gorilla gorilla66.671e-147 425
LLPS-Pap-0741Pan paniscus66.672e-147 425
LLPS-Mal-3448Mandrillus leucophaeus66.571e-147 426
LLPS-Myl-2126Myotis lucifugus66.565e-150 432
LLPS-Pes-2614Pelodiscus sinensis65.911e-143 415
LLPS-Dio-2255Dipodomys ordii65.751e-148 428
LLPS-Ora-2175Ornithorhynchus anatinus64.464e-145 420
LLPS-Tut-1199Tursiops truncatus63.592e-75 236
LLPS-Tag-0623Taeniopygia guttata60.531e-153 442
LLPS-Orn-0678Oreochromis niloticus58.735e-133 390
LLPS-Cii-0117Ciona intestinalis54.882e-2191.3
LLPS-Ere-0823Erinaceus europaeus33.12e-32 127