LLPS-Cus-2114
Csa_2G093820
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | Protein pelota homolog |
Gene Name: | Csa_2G093820 |
Ensembl Gene: | Csa_2G093820 |
Ensembl Protein: | KGN61340 |
Organism: | Cucumis sativus |
Taxa ID: | 3659 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Nucleolus, Stress granule | Predicted from orthologs | (View) |
▼ FUNCTION
May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | KGN61340 | KGN61340 |
UniProt | A0A0A0LHC6, A0A0A0LHC6_CUCSA | |
GeneBank | CM002923 | KGN61340.1 |
RefSeq | XM_004138846.2, XM_011650730.1 | XP_004138894.1, XP_011649032.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MKIVRKQLDP NGPGSVKMVP IDSDDLWHAF NLIAPGDTVM AVTVRKVIKE KASGGRDAER 60 61 VKLKLEIKVE EVADYDKVGS ILRIRGKNIL ENEHVKIGAY HTLELELNRP FVLRKDVWDS 120 121 FALDVLHQAS DPAASADLAV VLMQEGLAHV LLVGKSMTIT RARIETSIPR KHGPAIAGYE 180 181 SALNKFFDNV LQAFLKYVDF NVVRCAVIAS PGFTKDQFHR HLLLEAERRQ LRPIIENKSR 240 241 IVLVHTTSGY KHSLREVLDA SNVMNMIKDT KAAQEVRALK DFFSMLSNDP DRACYGPKHV 300 301 EVAHERLAIQ TLLITDDLFR NNDITQRQKY VNLVDSVRDS GGTVHIFSSM HVSGEQLAQI 360 361 TGIAAILRFP LPDLEDIEM 379 |
Nucleotide CDS Sequence (FASTA) |
1 ATGAAGATCG TACGTAAACA GCTTGATCCA AATGGACCTG GTAGCGTCAA GATGGTGCCG 60 61 ATTGATTCAG ATGATCTATG GCATGCGTTC AATCTGATAG CTCCGGGAGA CACTGTCATG 120 121 GCTGTCACCG TTAGGAAAGT CATCAAAGAG AAGGCTTCTG GAGGAAGAGA TGCAGAACGA 180 181 GTGAAACTCA AGCTAGAAAT AAAAGTTGAG GAGGTGGCAG ATTATGACAA AGTTGGCTCT 240 241 ATTCTGCGGA TACGTGGAAA AAATATTCTT GAAAATGAGC ATGTGAAGAT TGGGGCTTAC 300 301 CATACTCTAG AACTTGAGCT GAATCGGCCA TTTGTTTTGA GAAAGGATGT TTGGGACTCT 360 361 TTTGCACTAG ATGTACTCCA TCAAGCTTCT GATCCTGCTG CTAGTGCTGA TTTGGCTGTG 420 421 GTTTTAATGC AAGAAGGACT AGCACATGTT CTCCTTGTTG GAAAGAGTAT GACAATTACT 480 481 CGAGCTCGAA TAGAAACTTC AATTCCTCGC AAGCATGGGC CAGCCATTGC TGGTTATGAA 540 541 TCGGCCTTGA ATAAATTCTT CGACAATGTT TTGCAGGCTT TCTTGAAGTA TGTTGATTTT 600 601 AATGTGGTGC GCTGTGCAGT GATAGCTAGT CCTGGATTTA CAAAGGACCA GTTCCATCGA 660 661 CACTTATTAT TGGAAGCTGA AAGAAGACAG CTAAGACCTA TTATTGAGAA TAAATCTCGC 720 721 ATAGTTCTTG TACATACAAC CTCAGGATAC AAGCATAGTT TACGAGAGGT TTTGGATGCT 780 781 TCGAATGTCA TGAATATGAT AAAAGACACT AAAGCAGCTC AGGAGGTGCG AGCTCTAAAG 840 841 GACTTTTTCA GCATGCTCTC CAACGATCCA GACCGTGCTT GTTATGGACC AAAACATGTG 900 901 GAGGTTGCCC ATGAACGACT GGCTATTCAA ACGTTGCTCA TTACTGATGA TCTCTTCAGG 960 961 AATAATGATA TAACGCAGCG GCAAAAGTAT GTCAATTTGG TTGATTCAGT TAGAGATTCG 1020 1021 GGTGGCACTG TTCATATATT TTCATCCATG CACGTTTCGG GGGAACAACT TGCCCAGATA 1080 1081 ACAGGAATTG CAGCTATCCT ACGATTTCCT CTGCCGGATC TTGAAGACAT TGAAATGTAA 1140 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Cytoplasm | |
Cellular Component | Nucleus | |
Molecular Function | Endonuclease activity | |
Molecular Function | Metal ion binding | |
Biological Process | Nuclear-transcribed mRNA catabolic process, no-go decay | |
Biological Process | Nuclear-transcribed mRNA catabolic process, non-stop decay | |
Biological Process | RNA surveillance |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Prp-1394 | Prunus persica | 88.39 | 0.0 | 702 |
LLPS-Viv-1857 | Vitis vinifera | 86.54 | 0.0 | 687 |
LLPS-Thc-2136 | Theobroma cacao | 86.28 | 0.0 | 685 |
LLPS-Vir-0105 | Vigna radiata | 86.02 | 0.0 | 692 |
LLPS-Via-1352 | Vigna angularis | 86.02 | 0.0 | 692 |
LLPS-Mae-1366 | Manihot esculenta | 85.75 | 0.0 | 681 |
LLPS-Phv-1006 | Phaseolus vulgaris | 85.75 | 0.0 | 688 |
LLPS-Glm-0558 | Glycine max | 85.22 | 0.0 | 685 |
LLPS-Gor-2348 | Gossypium raimondii | 84.43 | 0.0 | 666 |
LLPS-Met-1303 | Medicago truncatula | 83.91 | 0.0 | 676 |
LLPS-Nia-1206 | Nicotiana attenuata | 83.38 | 0.0 | 663 |
LLPS-Sol-1057 | Solanum lycopersicum | 82.59 | 0.0 | 652 |
LLPS-Sot-1683 | Solanum tuberosum | 82.59 | 0.0 | 653 |
LLPS-Arl-2469 | Arabidopsis lyrata | 81.27 | 0.0 | 640 |
LLPS-Pot-2152 | Populus trichocarpa | 81.27 | 0.0 | 639 |
LLPS-Art-1969 | Arabidopsis thaliana | 80.74 | 0.0 | 636 |
LLPS-Hea-1803 | Helianthus annuus | 80.21 | 0.0 | 648 |
LLPS-Brr-1249 | Brassica rapa | 80.21 | 0.0 | 635 |
LLPS-Brn-0868 | Brassica napus | 79.95 | 0.0 | 633 |
LLPS-Bro-1341 | Brassica oleracea | 79.95 | 0.0 | 631 |
LLPS-Amt-0900 | Amborella trichopoda | 79.42 | 0.0 | 635 |
LLPS-Mua-0014 | Musa acuminata | 77.57 | 0.0 | 620 |
LLPS-Orp-0780 | Oryza punctata | 76.25 | 0.0 | 605 |
LLPS-Orm-0033 | Oryza meridionalis | 75.99 | 0.0 | 603 |
LLPS-Sob-0510 | Sorghum bicolor | 75.53 | 0.0 | 598 |
LLPS-Ori-2464 | Oryza indica | 75.46 | 0.0 | 600 |
LLPS-Org-0247 | Oryza glaberrima | 75.46 | 0.0 | 600 |
LLPS-Tru-1507 | Triticum urartu | 75.22 | 0.0 | 538 |
LLPS-Tra-2727 | Triticum aestivum | 74.93 | 0.0 | 596 |
LLPS-Brd-1395 | Brachypodium distachyon | 74.41 | 0.0 | 591 |
LLPS-Sei-0404 | Setaria italica | 73.71 | 0.0 | 590 |
LLPS-Zem-2056 | Zea mays | 73.32 | 0.0 | 584 |
LLPS-Orni-0971 | Oryza nivara | 72.82 | 0.0 | 569 |
LLPS-Orb-0562 | Oryza barthii | 72.82 | 0.0 | 569 |
LLPS-Orgl-0344 | Oryza glumaepatula | 72.82 | 0.0 | 569 |
LLPS-Orr-0775 | Oryza rufipogon | 72.82 | 0.0 | 569 |
LLPS-Ors-0375 | Oryza sativa | 72.73 | 9e-82 | 257 |
LLPS-Coc-1527 | Corchorus capsularis | 72.51 | 0.0 | 595 |
LLPS-Orbr-1245 | Oryza brachyantha | 72.3 | 0.0 | 579 |
LLPS-Hov-2224 | Hordeum vulgare | 70.69 | 3e-50 | 171 |
LLPS-Dac-1115 | Daucus carota | 68.6 | 2e-163 | 473 |
LLPS-Php-1317 | Physcomitrella patens | 66.49 | 0.0 | 544 |
LLPS-Lep-0890 | Leersia perrieri | 65.71 | 0.0 | 551 |
LLPS-Meg-1018 | Meleagris gallopavo | 64.15 | 3e-40 | 144 |
LLPS-Sem-0756 | Selaginella moellendorffii | 63.59 | 0.0 | 523 |
LLPS-Chr-1092 | Chlamydomonas reinhardtii | 54.9 | 1e-141 | 414 |
LLPS-Drm-0658 | Drosophila melanogaster | 52.69 | 6e-145 | 424 |
LLPS-Sah-4003 | Sarcophilus harrisii | 52.54 | 2e-85 | 266 |
LLPS-Anc-1772 | Anolis carolinensis | 52.13 | 2e-140 | 412 |
LLPS-Chc-0169 | Chondrus crispus | 51.98 | 1e-76 | 243 |
LLPS-Mea-2775 | Mesocricetus auratus | 51.32 | 5e-140 | 411 |
LLPS-Xet-2670 | Xenopus tropicalis | 51.27 | 4e-103 | 315 |
LLPS-Osl-0608 | Ostreococcus lucimarinus | 51.18 | 4e-131 | 388 |
LLPS-Mum-4133 | Mus musculus | 50.79 | 1e-138 | 407 |
LLPS-Ran-2193 | Rattus norvegicus | 50.79 | 2e-138 | 407 |
LLPS-Myl-2054 | Myotis lucifugus | 50.79 | 4e-140 | 411 |
LLPS-Xim-3851 | Xiphophorus maculatus | 50.79 | 8e-140 | 410 |
LLPS-Dio-2539 | Dipodomys ordii | 50.79 | 6e-139 | 408 |
LLPS-Asm-0313 | Astyanax mexicanus | 50.53 | 7e-138 | 405 |
LLPS-Pof-0558 | Poecilia formosa | 50.53 | 2e-139 | 410 |
LLPS-Orn-2349 | Oreochromis niloticus | 50.4 | 5e-135 | 398 |
LLPS-Pes-2676 | Pelodiscus sinensis | 50.27 | 6e-138 | 405 |
LLPS-Cis-0911 | Ciona savignyi | 50.26 | 5e-138 | 406 |
LLPS-Ova-1620 | Ovis aries | 50.26 | 7e-138 | 405 |
LLPS-Bot-2993 | Bos taurus | 50.26 | 7e-138 | 405 |
LLPS-Hos-0270 | Homo sapiens | 50.26 | 7e-138 | 405 |
LLPS-Gog-1670 | Gorilla gorilla | 50.0 | 2e-137 | 404 |
LLPS-Icp-3048 | Ictalurus punctatus | 50.0 | 2e-139 | 410 |
LLPS-Caj-3217 | Callithrix jacchus | 50.0 | 1e-137 | 405 |
LLPS-Maf-1378 | Macaca fascicularis | 50.0 | 2e-137 | 404 |
LLPS-Chs-2935 | Chlorocebus sabaeus | 50.0 | 2e-137 | 404 |
LLPS-Aon-4307 | Aotus nancymaae | 50.0 | 2e-137 | 404 |
LLPS-Cea-0740 | Cercocebus atys | 50.0 | 2e-137 | 404 |
LLPS-Sus-0050 | Sus scrofa | 50.0 | 2e-135 | 399 |
LLPS-Paa-1636 | Papio anubis | 50.0 | 2e-137 | 404 |
LLPS-Mal-3263 | Mandrillus leucophaeus | 50.0 | 2e-137 | 404 |
LLPS-Aim-4125 | Ailuropoda melanoleuca | 50.0 | 5e-138 | 406 |
LLPS-Fia-2086 | Ficedula albicollis | 50.0 | 4e-137 | 404 |
LLPS-Rhb-0910 | Rhinopithecus bieti | 50.0 | 2e-137 | 404 |
LLPS-Pap-2835 | Pan paniscus | 50.0 | 2e-137 | 404 |
LLPS-Urm-3580 | Ursus maritimus | 50.0 | 4e-138 | 406 |
LLPS-Pat-2051 | Pan troglodytes | 50.0 | 2e-137 | 405 |
LLPS-Man-0331 | Macaca nemestrina | 50.0 | 2e-137 | 404 |
LLPS-Loa-2974 | Loxodonta africana | 50.0 | 2e-137 | 404 |
LLPS-Cas-1697 | Carlito syrichta | 50.0 | 2e-137 | 404 |
LLPS-Nol-1584 | Nomascus leucogenys | 50.0 | 2e-137 | 404 |
LLPS-Tag-1451 | Taeniopygia guttata | 50.0 | 8e-136 | 400 |
LLPS-Cap-4403 | Cavia porcellus | 50.0 | 3e-138 | 407 |
LLPS-Mam-0424 | Macaca mulatta | 50.0 | 2e-137 | 404 |
LLPS-Tut-1768 | Tursiops truncatus | 49.74 | 3e-137 | 404 |
LLPS-Gaa-2575 | Gasterosteus aculeatus | 49.74 | 4e-136 | 401 |
LLPS-Scf-1658 | Scleropages formosus | 49.74 | 1e-139 | 410 |
LLPS-Orc-0588 | Oryctolagus cuniculus | 49.74 | 2e-136 | 402 |
LLPS-Dar-1973 | Danio rerio | 49.74 | 1e-136 | 402 |
LLPS-Fec-3471 | Felis catus | 49.74 | 2e-137 | 405 |
LLPS-Ict-0367 | Ictidomys tridecemlineatus | 49.74 | 6e-138 | 405 |
LLPS-Orl-0903 | Oryzias latipes | 49.47 | 5e-137 | 404 |
LLPS-Tar-3586 | Takifugu rubripes | 49.47 | 2e-138 | 407 |
LLPS-Otg-0838 | Otolemur garnettii | 49.47 | 7e-137 | 403 |
LLPS-Ten-0211 | Tetraodon nigroviridis | 49.47 | 6e-137 | 403 |
LLPS-Scm-2974 | Scophthalmus maximus | 49.21 | 1e-135 | 400 |
LLPS-Cii-0329 | Ciona intestinalis | 48.93 | 2e-134 | 397 |
LLPS-Mod-2309 | Monodelphis domestica | 48.73 | 9e-112 | 363 |
LLPS-Anp-2355 | Anas platyrhynchos | 47.93 | 2e-90 | 280 |
LLPS-Cae-0972 | Caenorhabditis elegans | 47.49 | 9e-117 | 352 |
LLPS-Abg-0270 | Absidia glauca | 45.99 | 5e-119 | 357 |
LLPS-Fud-2258 | Fukomys damarensis | 45.26 | 1e-89 | 280 |
LLPS-Cym-0267 | Cyanidioschyzon merolae | 44.18 | 3e-102 | 315 |
LLPS-Gas-1284 | Galdieria sulphuraria | 43.16 | 9e-108 | 328 |
LLPS-Scc-0762 | Schizosaccharomyces cryophilus | 41.78 | 2e-104 | 320 |
LLPS-Tum-0135 | Tuber melanosporum | 41.44 | 3e-100 | 309 |
LLPS-Scj-1359 | Schizosaccharomyces japonicus | 41.24 | 7e-103 | 316 |
LLPS-Scp-0301 | Schizosaccharomyces pombe | 40.7 | 2e-100 | 310 |
LLPS-Crn-0553 | Cryptococcus neoformans | 39.9 | 2e-96 | 301 |
LLPS-Scs-0790 | Sclerotinia sclerotiorum | 39.9 | 2e-95 | 298 |
LLPS-Dos-0006 | Dothistroma septosporum | 39.74 | 2e-87 | 277 |
LLPS-Trv-1444 | Trichoderma virens | 38.9 | 8e-78 | 252 |
LLPS-Asn-0990 | Aspergillus nidulans | 38.86 | 4e-86 | 273 |
LLPS-Trr-0240 | Trichoderma reesei | 38.67 | 6e-76 | 247 |
LLPS-Gag-0721 | Gaeumannomyces graminis | 38.61 | 3e-79 | 256 |
LLPS-Blg-0405 | Blumeria graminis | 38.58 | 6e-88 | 278 |
LLPS-Usm-0193 | Ustilago maydis | 38.54 | 1e-79 | 257 |
LLPS-Asni-0364 | Aspergillus niger | 38.44 | 5e-83 | 265 |
LLPS-Fuv-0885 | Fusarium verticillioides | 38.4 | 1e-78 | 254 |
LLPS-Pug-1181 | Puccinia graminis | 38.14 | 6e-84 | 268 |
LLPS-Fuo-0023 | Fusarium oxysporum | 37.83 | 2e-79 | 256 |
LLPS-Aso-0022 | Aspergillus oryzae | 37.63 | 8e-78 | 251 |
LLPS-Coo-0342 | Colletotrichum orbiculare | 37.6 | 6e-76 | 247 |
LLPS-Kop-0647 | Komagataella pastoris | 37.57 | 4e-88 | 278 |
LLPS-Ved-1233 | Verticillium dahliae | 37.57 | 2e-76 | 248 |
LLPS-Asf-0659 | Aspergillus flavus | 37.44 | 2e-83 | 266 |
LLPS-Spr-0379 | Sporisorium reilianum | 37.32 | 2e-77 | 252 |
LLPS-Nec-0722 | Neurospora crassa | 37.0 | 9e-77 | 249 |
LLPS-Ast-0874 | Aspergillus terreus | 36.95 | 7e-85 | 270 |
LLPS-Fus-0133 | Fusarium solani | 36.87 | 3e-78 | 253 |
LLPS-Cogr-0203 | Colletotrichum graminicola | 36.87 | 3e-77 | 250 |
LLPS-Put-0119 | Puccinia triticina | 36.83 | 2e-68 | 227 |
LLPS-Zyt-1396 | Zymoseptoria tritici | 36.76 | 5e-80 | 262 |
LLPS-Cog-0827 | Colletotrichum gloeosporioides | 36.68 | 1e-76 | 249 |
LLPS-Mel-0458 | Melampsora laricipopulina | 36.43 | 1e-73 | 241 |
LLPS-Phn-0095 | Phaeosphaeria nodorum | 36.41 | 2e-77 | 251 |
LLPS-Pyt-1069 | Pyrenophora teres | 36.39 | 2e-78 | 253 |
LLPS-Asc-0376 | Aspergillus clavatus | 36.32 | 1e-81 | 262 |
LLPS-Nef-0115 | Neosartorya fischeri | 36.21 | 2e-80 | 259 |
LLPS-Asfu-0699 | Aspergillus fumigatus | 35.94 | 3e-79 | 256 |
LLPS-Beb-0031 | Beauveria bassiana | 35.71 | 9e-70 | 231 |
LLPS-Miv-0746 | Microbotryum violaceum | 34.91 | 6e-77 | 251 |
LLPS-Pytr-0983 | Pyrenophora triticirepentis | 34.55 | 8e-69 | 228 |
LLPS-Mao-1420 | Magnaporthe oryzae | 34.05 | 2e-64 | 217 |
LLPS-Lem-0807 | Leptosphaeria maculans | 33.83 | 5e-72 | 237 |
LLPS-Sac-0197 | Saccharomyces cerevisiae | 30.21 | 3e-61 | 208 |
LLPS-Asg-0835 | Ashbya gossypii | 28.61 | 2e-58 | 201 |
LLPS-Yal-0052 | Yarrowia lipolytica | 27.62 | 6e-32 | 129 |