LLPS-Brr-2497
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Expansin |
| Ensembl Gene: | Bra005025 |
| Ensembl Protein: | Bra005025.1-P |
| Organism: | Brassica rapa |
| Taxa ID: | 51351 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | Bra005025.1 | Bra005025.1-P |
| UniProt | M4CLD8, M4CLD8_BRARP |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MANLAILFTT FLLLSLADAK IPGVYSGGAW ETAHATFYGG SDASGTMGGA CGYGNLYSQG 60 61 YGTNTAALST ALFNNGMSCG ACFELKCAND PQWCHSGSPS ILITATNFCP PNFAQASDNG 120 121 GWCNPPRAHF DLAMPVFLKI AQYRAGIVPV SYRRVPCRKR GGIRFTINGH RYFNLVLITN 180 181 VAGAGDIVRT SVKGTRTGWM SLSRNWGQNW QSNAVLVGQS LSFRVTGSDR RTSTSWNIVP 240 241 SNWQFGQTFV GKNFRV 256 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGCTAACC TAGCAATTCT CTTTACAACA TTTCTCCTTT TAAGCCTCGC CGACGCCAAG 60 61 ATCCCCGGCG TCTACTCTGG AGGCGCGTGG GAAACTGCAC ACGCCACTTT CTACGGTGGC 120 121 AGCGACGCCT CCGGCACTAT GGGAGGAGCT TGTGGTTACG GGAACCTATA CAGCCAGGGC 180 181 TATGGAACTA ACACGGCTGC TTTGAGCACG GCGCTGTTTA ACAACGGTAT GAGCTGTGGA 240 241 GCCTGCTTTG AGCTAAAATG CGCCAACGAC CCGCAATGGT GCCACTCAGG TAGCCCGTCG 300 301 ATTCTCATTA CCGCAACCAA CTTCTGTCCA CCAAACTTTG CTCAGGCAAG CGATAACGGA 360 361 GGATGGTGCA ATCCTCCACG TGCCCACTTC GATCTTGCCA TGCCTGTCTT CCTCAAGATT 420 421 GCTCAATATC GCGCCGGCAT TGTCCCCGTC TCATACCGCA GGGTGCCTTG TAGAAAGAGA 480 481 GGAGGGATAA GGTTCACAAT AAACGGTCAT CGTTACTTCA ACTTGGTTCT GATCACTAAC 540 541 GTGGCGGGAG CAGGAGACAT AGTGAGGACG AGCGTGAAAG GTACACGGAC TGGTTGGATG 600 601 AGTTTGAGCA GAAACTGGGG TCAGAACTGG CAATCTAACG CTGTTTTGGT TGGTCAGTCA 660 661 CTTTCTTTCC GTGTCACAGG CAGTGACCGT AGAACCTCTA CTTCATGGAA CATTGTTCCT 720 721 TCTAACTGGC AGTTTGGTCA AACATTTGTC GGGAAGAATT TCAGGGTCTA A 771 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Cell wall | |
Cellular Component | Extracellular region | |
Cellular Component | Membrane | |
Biological Process | Plant-type cell wall organization |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Bro-0801 | Brassica oleracea | 95.31 | 0.0 | 508 |
| LLPS-Brn-3416 | Brassica napus | 95.31 | 0.0 | 508 |
| LLPS-Arl-1778 | Arabidopsis lyrata | 95.26 | 9e-180 | 502 |
| LLPS-Art-0117 | Arabidopsis thaliana | 94.86 | 7e-180 | 502 |
| LLPS-Pot-2227 | Populus trichocarpa | 89.39 | 6e-167 | 469 |
| LLPS-Dac-2349 | Daucus carota | 88.57 | 2e-164 | 463 |
| LLPS-Prp-2242 | Prunus persica | 88.31 | 6e-164 | 462 |
| LLPS-Cus-0633 | Cucumis sativus | 87.9 | 1e-161 | 456 |
| LLPS-Met-2011 | Medicago truncatula | 86.27 | 1e-166 | 469 |
| LLPS-Viv-1012 | Vitis vinifera | 86.22 | 3e-163 | 461 |
| LLPS-Phv-1882 | Phaseolus vulgaris | 86.17 | 2e-165 | 465 |
| LLPS-Vir-1263 | Vigna radiata | 86.17 | 2e-165 | 466 |
| LLPS-Thc-0422 | Theobroma cacao | 86.17 | 2e-164 | 463 |
| LLPS-Mae-0005 | Manihot esculenta | 85.94 | 4e-164 | 462 |
| LLPS-Hea-0763 | Helianthus annuus | 85.83 | 2e-164 | 463 |
| LLPS-Mua-2357 | Musa acuminata | 84.84 | 4e-156 | 442 |
| LLPS-Glm-0762 | Glycine max | 84.58 | 2e-163 | 460 |
| LLPS-Lep-2357 | Leersia perrieri | 84.23 | 3e-150 | 427 |
| LLPS-Gor-1827 | Gossypium raimondii | 83.72 | 4e-162 | 457 |
| LLPS-Sei-2024 | Setaria italica | 83.68 | 2e-147 | 420 |
| LLPS-Amt-1947 | Amborella trichopoda | 83.61 | 1e-154 | 438 |
| LLPS-Orp-1573 | Oryza punctata | 83.2 | 1e-149 | 426 |
| LLPS-Via-2387 | Vigna angularis | 83.01 | 4e-160 | 452 |
| LLPS-Sot-0580 | Solanum tuberosum | 82.92 | 2e-150 | 427 |
| LLPS-Org-1457 | Oryza glaberrima | 82.45 | 2e-149 | 425 |
| LLPS-Orm-1517 | Oryza meridionalis | 82.45 | 2e-149 | 425 |
| LLPS-Ors-0868 | Oryza sativa | 82.45 | 2e-149 | 425 |
| LLPS-Orgl-1021 | Oryza glumaepatula | 82.45 | 2e-149 | 425 |
| LLPS-Orni-1670 | Oryza nivara | 82.45 | 2e-149 | 425 |
| LLPS-Ori-1251 | Oryza indica | 82.45 | 2e-149 | 425 |
| LLPS-Sob-1714 | Sorghum bicolor | 82.38 | 1e-148 | 423 |
| LLPS-Sol-1819 | Solanum lycopersicum | 80.4 | 4e-153 | 434 |
| LLPS-Hov-0508 | Hordeum vulgare | 79.92 | 4e-142 | 407 |
| LLPS-Nia-2031 | Nicotiana attenuata | 79.84 | 6e-156 | 441 |
| LLPS-Zem-2322 | Zea mays | 78.4 | 1e-144 | 413 |
| LLPS-Orr-0309 | Oryza rufipogon | 77.55 | 2e-134 | 387 |
| LLPS-Brd-1640 | Brachypodium distachyon | 71.66 | 2e-123 | 359 |
| LLPS-Tra-0037 | Triticum aestivum | 69.32 | 2e-119 | 348 |
| LLPS-Orb-0150 | Oryza barthii | 69.29 | 8e-125 | 362 |
| LLPS-Orbr-2247 | Oryza brachyantha | 66.67 | 6e-117 | 342 |
| LLPS-Tru-2095 | Triticum urartu | 63.64 | 4e-94 | 288 |