LLPS-Brr-0473
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | Pectin acetylesterase |
| Ensembl Gene: | Bra021961 |
| Ensembl Protein: | Bra021961.1-P |
| Organism: | Brassica rapa |
| Taxa ID: | 51351 |
| LLPS Type: | Client |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | Bra021961.1 | Bra021961.1-P |
| UniProt | M4DZL4, M4DZL4_BRARP |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MVRLKQVWSS VMVLAVVVIG AGAVPITYLE SAVAKGAVCL DGSAPAYHFD KGSGSGVNNW 60 61 IVHMEGGGWC TDIATCVKRK TTMKGSSKFM NKDFGFSGIL GGKQSTNPDF YNWNRIKVRY 120 121 CDGSSFTGDI EAVDPTNKLF FRGARVWRAV IDDLMAKGMS NAQNAILSGC SAGALAAILH 180 181 CDQFKSILPT TAKVKCVSDA GFFIHGKDIS GGSYIESYYS KVVSTHGSAK SLPASCTSSM 240 241 KPELCFFPQY VVKTMQTPLF VINAAFDSWQ IKNVLAPTSV DKRKEWKDCK LDLKKCTAAQ 300 301 LQTVQGYRDQ MLAALAPVQA TTTRGLFLDS CHAHCQGGSA ATWSGAQGPQ VGNTKMAKAV 360 361 GDWFYERSTF QNIDCPSLNC NPTCPAVSTE D 391 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGTGAGGC TAAAGCAAGT ATGGTCAAGT GTTATGGTAT TAGCCGTAGT TGTGATCGGA 60 61 GCTGGAGCGG TCCCCATCAC ATATCTTGAA TCTGCTGTGG CTAAAGGAGC CGTGTGCTTG 120 121 GACGGTAGCG CACCAGCGTA CCATTTCGAT AAAGGATCTG GCTCAGGAGT GAACAACTGG 180 181 ATCGTTCATA TGGAGGGAGG AGGATGGTGC ACTGATATAG CTACATGCGT GAAACGTAAA 240 241 ACTACAATGA AGGGTTCGTC TAAGTTTATG AACAAAGACT TCGGTTTCTC CGGTATCTTG 300 301 GGTGGCAAGC AAAGCACCAA TCCAGACTTT TATAACTGGA ACAGAATCAA AGTTCGGTAT 360 361 TGTGATGGTT CATCTTTCAC CGGTGATATA GAAGCCGTTG ATCCGACAAA CAAGCTCTTC 420 421 TTCCGCGGTG CTAGGGTTTG GCGTGCGGTG ATCGATGATC TTATGGCCAA GGGAATGAGC 480 481 AACGCTCAAA ACGCAATACT CTCCGGTTGT TCAGCCGGAG CACTGGCTGC GATTCTACAT 540 541 TGCGACCAAT TCAAGTCCAT TCTCCCCACA ACAGCTAAGG TCAAGTGTGT TTCCGACGCC 600 601 GGTTTCTTCA TCCACGGTAA GGATATCAGT GGAGGATCTT ACATTGAATC ATACTACAGT 660 661 AAAGTCGTAT CGACCCACGG ATCTGCAAAG AGTCTTCCTG CTTCTTGCAC CTCAAGTATG 720 721 AAGCCAGAAT TGTGTTTCTT CCCGCAATAC GTTGTAAAGA CCATGCAAAC ACCACTTTTC 780 781 GTAATCAATG CCGCCTTCGA TTCTTGGCAG ATCAAAAATG TTTTGGCTCC AACCTCTGTT 840 841 GATAAACGCA AAGAGTGGAA GGATTGTAAG CTTGATCTTA AGAAGTGTAC AGCCGCTCAG 900 901 CTTCAAACCG TTCAAGGGTA TAGAGACCAA ATGTTGGCTG CGTTGGCACC TGTTCAAGCA 960 961 ACGACGACTA GAGGATTGTT CTTAGATTCG TGCCACGCTC ATTGCCAAGG TGGAAGTGCC 1020 1021 GCCACTTGGT CCGGTGCTCA AGGCCCCCAA GTCGGCAATA CGAAAATGGC GAAAGCGGTT 1080 1081 GGAGACTGGT TCTATGAGCG GAGTACGTTT CAGAACATAG ATTGTCCATC TTTGAATTGC 1140 1141 AATCCTACTT GTCCTGCAGT ATCCACTGAA GACTAA 1176 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Cell wall | |
Cellular Component | Extracellular region | |
Cellular Component | Integral component of membrane | |
Molecular Function | Hydrolase activity | |
Biological Process | Cell wall organization |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Bro-0885 | Brassica oleracea | 98.72 | 0.0 | 741 |
| LLPS-Brn-2683 | Brassica napus | 98.72 | 0.0 | 741 |
| LLPS-Arl-2825 | Arabidopsis lyrata | 91.56 | 0.0 | 694 |
| LLPS-Art-0002 | Arabidopsis thaliana | 91.05 | 0.0 | 691 |
| LLPS-Pot-2129 | Populus trichocarpa | 71.12 | 0.0 | 555 |
| LLPS-Coc-0000 | Corchorus capsularis | 69.84 | 0.0 | 539 |
| LLPS-Thc-0127 | Theobroma cacao | 68.66 | 0.0 | 525 |
| LLPS-Mae-1246 | Manihot esculenta | 67.57 | 0.0 | 529 |
| LLPS-Zem-2351 | Zea mays | 63.26 | 8e-162 | 468 |
| LLPS-Org-0636 | Oryza glaberrima | 62.22 | 1e-164 | 477 |
| LLPS-Orm-2118 | Oryza meridionalis | 62.22 | 6e-165 | 478 |
| LLPS-Orr-1930 | Oryza rufipogon | 61.94 | 3e-164 | 476 |
| LLPS-Ors-1005 | Oryza sativa | 61.94 | 2e-164 | 476 |
| LLPS-Orgl-1002 | Oryza glumaepatula | 61.94 | 2e-164 | 476 |
| LLPS-Orni-0926 | Oryza nivara | 61.94 | 3e-164 | 476 |
| LLPS-Ori-2071 | Oryza indica | 61.94 | 8e-163 | 475 |
| LLPS-Orb-1167 | Oryza barthii | 61.94 | 1e-163 | 475 |
| LLPS-Sob-2530 | Sorghum bicolor | 61.67 | 5e-158 | 458 |
| LLPS-Sei-0493 | Setaria italica | 61.5 | 5e-162 | 468 |
| LLPS-Gor-1890 | Gossypium raimondii | 60.74 | 3e-171 | 493 |
| LLPS-Orp-2356 | Oryza punctata | 60.56 | 2e-161 | 466 |
| LLPS-Brd-0782 | Brachypodium distachyon | 60.45 | 3e-161 | 466 |
| LLPS-Lep-1827 | Leersia perrieri | 60.28 | 3e-163 | 472 |
| LLPS-Tra-1679 | Triticum aestivum | 60.11 | 2e-165 | 476 |
| LLPS-Hov-1763 | Hordeum vulgare | 57.65 | 7e-155 | 450 |
| LLPS-Php-1799 | Physcomitrella patens | 47.95 | 2e-120 | 365 |