LLPS-Brn-3240
BnaC03g34500D
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | BnaC03g34500D protein |
| Gene Name: | BnaC03g34500D, GSBRNA2T00094195001 |
| Ensembl Gene: | GSBRNA2T00111871001 |
| Ensembl Protein: | CDX74115 |
| Organism: | Brassica napus |
| Taxa ID: | 3708 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | CDX74115 | CDX74115 |
| UniProt | A0A078ILR6, A0A078ILR6_BRANA | |
| GeneBank | LK032873 | CDY49993.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MDSTSAARRR INAIHSHLVT SSRSSPLLLS SNPTAGEFCL DNGYSVVLPE KLSTGKWNVY 60 61 RSARSPFKLV SRFPDHPDIA TLHDNFEHAV HDFRDYKYLG TRVRVDGTVG DYKWMTYGEV 120 121 GTARTALGSG LVHHGITTGS SVGIYFINRP EWLIVDQACA SYSYVSVPLY DTLGPDAVKF 180 181 IVNHANVQAI FCVAETLNSL LSGLSEMPSV RLVVVVGGLN ESLPSLPPSA GVKVVSYSVL 240 241 LNQGRSNPQP FSPPKPDDVA TLCYTSGTTG TPKGVVLTHA NLIANVAGSS FSVKFFSSDI 300 301 YISYLPLAHI YERANQILAV YFGVAVGFYQ GDNMKLLDDL AALRPTVFSS VPRLYNRIYD 360 361 GITNAVKTSG GLKERLFNAA YNAKKQALLN GKSAFPIWDR LVFNKIKDRL GGRVRFMTSG 420 421 ASPLSPEVLE FLKICFGGRV SEGYGMTETS CVISGMDEGD NLTGHVGSPN PACEVKLVDV 480 481 PEMNYTSADE PHPRGEICVR GPIIFRGYYK DEVQTREVID EDGWLHTGDI GLWLPGGRLK 540 541 IIDRKKNIFK LAQGEYIAPE KIENVYAKCR FVGQCFIYGD SFNSSLVAVV SVDPDVLKSW 600 601 AASEGIKGDL RELCNNPRVK AAVLSDMDAV GRESQLRGFE FAKAVTLVLE PFTLENGLLT 660 661 PTFKIKRPQA KEYFAEAITN MYKELAASDP TANKAL 696 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGATTCTA CCTCCGCCGC ACGCCGCCGC ATAAACGCTA TCCACTCCCA TCTCGTCACG 60 61 TCTTCCCGCT CCTCCCCTCT CCTCCTCAGC TCCAATCCCA CCGCCGGCGA GTTCTGTCTC 120 121 GATAATGGCT ATAGCGTCGT GCTTCCGGAG AAGCTGAGCA CTGGCAAGTG GAACGTCTAC 180 181 AGATCTGCTC GATCTCCGTT CAAGCTCGTT AGCAGGTTCC CTGATCATCC TGACATCGCC 240 241 ACTCTCCATG ACAACTTTGA GCATGCTGTT CATGACTTTC GGGATTACAA GTATCTAGGA 300 301 ACTCGCGTTC GTGTCGACGG AACTGTTGGA GACTACAAAT GGATGACATA TGGAGAAGTT 360 361 GGTACAGCAA GAACTGCTTT AGGTTCTGGT TTAGTTCATC ATGGAATCAC CACGGGATCT 420 421 TCTGTTGGAA TTTACTTTAT CAACCGCCCA GAGTGGCTCA TTGTCGATCA AGCTTGTGCT 480 481 TCTTATTCGT ATGTGTCTGT TCCTTTGTAT GATACTCTTG GTCCTGATGC TGTAAAGTTT 540 541 ATCGTCAATC ATGCAAATGT GCAAGCCATA TTCTGTGTGG CTGAGACGTT AAACTCCTTA 600 601 CTTAGCGGCT TGTCTGAGAT GCCAAGTGTA CGCCTGGTGG TGGTTGTGGG AGGGTTGAAT 660 661 GAATCGTTGC CTTCGCTTCC CCCATCCGCA GGAGTTAAAG TTGTATCATA TTCGGTGTTA 720 721 CTGAATCAGG GCCGTAGTAA CCCTCAGCCG TTTTCTCCAC CAAAGCCTGA TGATGTTGCA 780 781 ACCTTATGCT ATACAAGCGG AACAACTGGG ACCCCAAAGG GAGTCGTATT GACTCATGCA 840 841 AACTTGATTG CAAATGTTGC TGGATCCAGT TTTAGTGTGA AATTTTTCTC TTCAGATATT 900 901 TACATTTCAT ATCTTCCACT GGCACACATA TACGAACGAG CAAATCAGAT CCTAGCTGTG 960 961 TACTTTGGAG TTGCCGTTGG TTTCTACCAA GGGGACAATA TGAAACTACT GGATGATTTG 1020 1021 GCTGCTCTGA GACCTACTGT ATTCAGCAGC GTCCCCCGGT TATACAATAG AATATATGAT 1080 1081 GGTATTACTA ATGCAGTAAA GACCTCGGGT GGGCTGAAAG AGAGACTCTT CAATGCTGCC 1140 1141 TATAATGCAA AGAAGCAGGC TCTCTTGAAT GGAAAAAGTG CCTTTCCCAT ATGGGACAGG 1200 1201 TTGGTATTTA ATAAGATAAA AGACAGACTT GGAGGACGGG TTCGTTTTAT GACGTCTGGG 1260 1261 GCTTCACCTC TGTCTCCTGA AGTGTTGGAG TTCTTGAAGA TATGCTTTGG AGGAAGGGTA 1320 1321 TCAGAGGGAT ATGGAATGAC TGAAACATCT TGTGTTATAA GTGGAATGGA CGAGGGTGAT 1380 1381 AACCTCACTG GACATGTTGG CTCTCCTAAT CCAGCTTGTG AAGTAAAGCT TGTGGATGTC 1440 1441 CCGGAAATGA ACTATACATC AGCGGATGAA CCACATCCTC GTGGCGAGAT ATGTGTTAGG 1500 1501 GGTCCCATCA TCTTCAGAGG CTATTACAAG GATGAAGTTC AAACGAGAGA GGTGATTGAT 1560 1561 GAAGATGGAT GGCTTCACAC TGGAGATATA GGTCTTTGGT TGCCGGGAGG ACGTCTAAAA 1620 1621 ATTATCGACA GGAAGAAGAA CATCTTCAAA TTGGCTCAAG GGGAGTATAT AGCTCCAGAG 1680 1681 AAAATTGAAA ATGTCTATGC CAAATGCAGA TTTGTGGGCC AATGCTTCAT ATATGGTGAT 1740 1741 AGCTTTAATT CATCATTGGT GGCTGTTGTA TCGGTTGATC CAGATGTGCT TAAAAGCTGG 1800 1801 GCTGCTTCAG AAGGCATAAA GGGAGATCTG AGAGAGTTGT GCAATAACCC GAGAGTGAAA 1860 1861 GCAGCAGTAT TATCAGACAT GGACGCTGTT GGGAGAGAAT CTCAGTTGAG AGGCTTTGAG 1920 1921 TTTGCAAAAG CTGTAACATT GGTGCTGGAG CCATTCACGC TAGAAAATGG CTTGTTGACA 1980 1981 CCAACATTCA AGATTAAGAG ACCACAAGCA AAGGAATACT TCGCAGAAGC AATAACAAAC 2040 2041 ATGTACAAGG AACTTGCTGC TTCTGATCCG ACGGCTAATA AAGCTTTGTG A 2091 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Brr-2143 | Brassica rapa | 99.43 | 0.0 | 1358 |
| LLPS-Arl-2637 | Arabidopsis lyrata | 95.29 | 0.0 | 1269 |
| LLPS-Art-1435 | Arabidopsis thaliana | 94.47 | 0.0 | 1257 |
| LLPS-Bro-1753 | Brassica oleracea | 92.92 | 0.0 | 1279 |
| LLPS-Thc-1216 | Theobroma cacao | 80.29 | 0.0 | 1157 |
| LLPS-Pot-1634 | Populus trichocarpa | 77.11 | 0.0 | 1145 |
| LLPS-Met-1810 | Medicago truncatula | 77.06 | 0.0 | 1112 |
| LLPS-Glm-0172 | Glycine max | 76.67 | 0.0 | 1129 |
| LLPS-Phv-1682 | Phaseolus vulgaris | 76.52 | 0.0 | 1135 |
| LLPS-Hov-0678 | Hordeum vulgare | 75.62 | 0.0 | 1040 |
| LLPS-Dac-2439 | Daucus carota | 74.74 | 0.0 | 1031 |
| LLPS-Mae-2648 | Manihot esculenta | 74.49 | 0.0 | 1083 |
| LLPS-Coc-1504 | Corchorus capsularis | 74.46 | 0.0 | 1080 |
| LLPS-Viv-1374 | Vitis vinifera | 73.38 | 0.0 | 1001 |
| LLPS-Orp-1489 | Oryza punctata | 73.08 | 0.0 | 1078 |
| LLPS-Prp-2528 | Prunus persica | 73.02 | 0.0 | 1068 |
| LLPS-Tra-1620 | Triticum aestivum | 72.9 | 0.0 | 1081 |
| LLPS-Brd-1367 | Brachypodium distachyon | 72.85 | 0.0 | 1073 |
| LLPS-Zem-2084 | Zea mays | 72.82 | 0.0 | 1058 |
| LLPS-Hea-0189 | Helianthus annuus | 72.81 | 0.0 | 1082 |
| LLPS-Sob-0289 | Sorghum bicolor | 72.74 | 0.0 | 1055 |
| LLPS-Sei-2104 | Setaria italica | 72.66 | 0.0 | 1068 |
| LLPS-Gor-0004 | Gossypium raimondii | 72.25 | 0.0 | 1069 |
| LLPS-Ors-0265 | Oryza sativa | 72.06 | 0.0 | 1060 |
| LLPS-Org-1712 | Oryza glaberrima | 71.9 | 0.0 | 1056 |
| LLPS-Orm-0782 | Oryza meridionalis | 70.49 | 0.0 | 1020 |
| LLPS-Orr-1492 | Oryza rufipogon | 70.09 | 0.0 | 1015 |
| LLPS-Ori-1598 | Oryza indica | 69.93 | 0.0 | 1024 |
| LLPS-Orb-0191 | Oryza barthii | 69.53 | 0.0 | 1011 |
| LLPS-Orni-1303 | Oryza nivara | 68.48 | 0.0 | 977 |
| LLPS-Orgl-1821 | Oryza glumaepatula | 67.61 | 0.0 | 971 |
| LLPS-Sem-0025 | Selaginella moellendorffii | 66.67 | 0.0 | 856 |
| LLPS-Sol-0168 | Solanum lycopersicum | 66.38 | 0.0 | 979 |
| LLPS-Php-1593 | Physcomitrella patens | 65.17 | 0.0 | 965 |
| LLPS-Orc-1667 | Oryctolagus cuniculus | 46.31 | 2e-157 | 479 |
| LLPS-Ova-0383 | Ovis aries | 46.05 | 3e-167 | 504 |
| LLPS-Mea-3405 | Mesocricetus auratus | 46.03 | 1e-144 | 444 |
| LLPS-Fec-3448 | Felis catus | 45.96 | 3e-169 | 510 |
| LLPS-Hos-3089 | Homo sapiens | 45.96 | 2e-170 | 513 |
| LLPS-Sus-1410 | Sus scrofa | 45.96 | 7e-169 | 509 |
| LLPS-Bot-1857 | Bos taurus | 45.88 | 7e-166 | 501 |
| LLPS-Orl-2877 | Oryzias latipes | 45.85 | 5e-173 | 518 |
| LLPS-Poa-4635 | Pongo abelii | 45.78 | 4e-169 | 509 |
| LLPS-Mam-0342 | Macaca mulatta | 45.73 | 1e-165 | 499 |
| LLPS-Chs-4814 | Chlorocebus sabaeus | 45.73 | 8e-166 | 500 |
| LLPS-Cii-1788 | Ciona intestinalis | 45.73 | 1e-175 | 526 |
| LLPS-Myl-0963 | Myotis lucifugus | 45.69 | 5e-169 | 508 |
| LLPS-Xim-3551 | Xiphophorus maculatus | 45.66 | 1e-176 | 528 |
| LLPS-Abg-1525 | Absidia glauca | 45.63 | 0.0 | 550 |
| LLPS-Pap-2472 | Pan paniscus | 45.61 | 7e-171 | 514 |
| LLPS-Pat-4445 | Pan troglodytes | 45.61 | 9e-171 | 514 |
| LLPS-Caj-3778 | Callithrix jacchus | 45.53 | 2e-167 | 505 |
| LLPS-Mup-3911 | Mustela putorius furo | 45.53 | 1e-168 | 508 |
| LLPS-Cis-2042 | Ciona savignyi | 45.47 | 1e-177 | 528 |
| LLPS-Ict-1017 | Ictidomys tridecemlineatus | 45.44 | 9e-169 | 509 |
| LLPS-Aon-4003 | Aotus nancymaae | 45.44 | 2e-169 | 511 |
| LLPS-Gog-4561 | Gorilla gorilla | 45.44 | 1e-169 | 511 |
| LLPS-Aim-2766 | Ailuropoda melanoleuca | 45.44 | 7e-168 | 506 |
| LLPS-Loa-2244 | Loxodonta africana | 45.36 | 4e-166 | 502 |
| LLPS-Caf-2922 | Canis familiaris | 45.27 | 3e-167 | 505 |
| LLPS-Cea-4410 | Cercocebus atys | 45.27 | 7e-168 | 506 |
| LLPS-Paa-0073 | Papio anubis | 45.27 | 7e-168 | 506 |
| LLPS-Maf-3343 | Macaca fascicularis | 45.09 | 6e-169 | 509 |
| LLPS-Pof-3726 | Poecilia formosa | 45.07 | 2e-172 | 517 |
| LLPS-Nol-0025 | Nomascus leucogenys | 45.02 | 1e-165 | 500 |
| LLPS-Eqc-3604 | Equus caballus | 44.96 | 2e-166 | 503 |
| LLPS-Man-4624 | Macaca nemestrina | 44.92 | 1e-164 | 498 |
| LLPS-Rhb-1605 | Rhinopithecus bieti | 44.92 | 7e-168 | 506 |
| LLPS-Mal-1115 | Mandrillus leucophaeus | 44.92 | 1e-164 | 498 |
| LLPS-Scf-4067 | Scleropages formosus | 44.77 | 2e-170 | 512 |
| LLPS-Meg-0564 | Meleagris gallopavo | 44.62 | 3e-168 | 507 |
| LLPS-Tag-0940 | Taeniopygia guttata | 44.62 | 3e-168 | 507 |
| LLPS-Pes-0092 | Pelodiscus sinensis | 44.46 | 1e-164 | 498 |
| LLPS-Fia-2001 | Ficedula albicollis | 44.44 | 1e-166 | 503 |
| LLPS-Cap-2686 | Cavia porcellus | 44.37 | 3e-160 | 486 |
| LLPS-Anc-1318 | Anolis carolinensis | 44.29 | 1e-167 | 505 |
| LLPS-Gaga-3033 | Gallus gallus | 44.27 | 6e-167 | 503 |
| LLPS-Anp-2154 | Anas platyrhynchos | 44.12 | 3e-170 | 511 |
| LLPS-Lac-2138 | Latimeria chalumnae | 44.1 | 7e-168 | 506 |
| LLPS-Ora-1872 | Ornithorhynchus anatinus | 44.03 | 2e-171 | 513 |
| LLPS-Scm-3769 | Scophthalmus maximus | 43.82 | 9e-168 | 506 |
| LLPS-Otg-2011 | Otolemur garnettii | 43.82 | 3e-167 | 505 |
| LLPS-Leo-2629 | Lepisosteus oculatus | 43.72 | 3e-169 | 510 |
| LLPS-Mod-2027 | Monodelphis domestica | 43.68 | 5e-170 | 512 |
| LLPS-Fud-2782 | Fukomys damarensis | 43.6 | 2e-170 | 512 |
| LLPS-Cas-0195 | Carlito syrichta | 43.44 | 5e-171 | 514 |
| LLPS-Mum-3729 | Mus musculus | 43.44 | 7e-171 | 513 |
| LLPS-Orn-3759 | Oreochromis niloticus | 43.42 | 5e-170 | 512 |
| LLPS-Dar-0169 | Danio rerio | 43.31 | 5e-171 | 514 |
| LLPS-Urm-0295 | Ursus maritimus | 43.2 | 1e-155 | 474 |
| LLPS-Ten-1542 | Tetraodon nigroviridis | 43.13 | 3e-161 | 488 |
| LLPS-Tar-0554 | Takifugu rubripes | 43.11 | 8e-165 | 498 |
| LLPS-Dio-2274 | Dipodomys ordii | 43.04 | 8e-170 | 511 |
| LLPS-Asm-0051 | Astyanax mexicanus | 42.9 | 9e-171 | 513 |
| LLPS-Icp-3046 | Ictalurus punctatus | 42.74 | 2e-164 | 496 |
| LLPS-Sah-1456 | Sarcophilus harrisii | 42.65 | 3e-168 | 506 |
| LLPS-Xet-3477 | Xenopus tropicalis | 42.61 | 2e-168 | 508 |
| LLPS-Gaa-2656 | Gasterosteus aculeatus | 42.36 | 5e-168 | 506 |
| LLPS-Ran-2603 | Rattus norvegicus | 42.14 | 8e-168 | 505 |
| LLPS-Cae-1253 | Caenorhabditis elegans | 40.45 | 5e-161 | 488 |
| LLPS-Pug-1352 | Puccinia graminis | 39.74 | 2e-156 | 477 |
| LLPS-Mel-0725 | Melampsora laricipopulina | 39.39 | 6e-152 | 465 |
| LLPS-Nec-1491 | Neurospora crassa | 39.36 | 9e-149 | 456 |
| LLPS-Fuo-1502 | Fusarium oxysporum | 39.32 | 2e-147 | 453 |
| LLPS-Fuv-0773 | Fusarium verticillioides | 39.32 | 2e-147 | 453 |
| LLPS-Phn-0442 | Phaeosphaeria nodorum | 39.27 | 2e-146 | 451 |
| LLPS-Beb-1654 | Beauveria bassiana | 39.22 | 3e-147 | 452 |
| LLPS-Scs-0604 | Sclerotinia sclerotiorum | 38.8 | 1e-145 | 448 |
| LLPS-Coo-0652 | Colletotrichum orbiculare | 38.57 | 8e-149 | 456 |
| LLPS-Pytr-0140 | Pyrenophora triticirepentis | 38.51 | 1e-148 | 456 |
| LLPS-Map-1352 | Magnaporthe poae | 38.46 | 2e-148 | 456 |
| LLPS-Trr-0757 | Trichoderma reesei | 38.4 | 3e-145 | 447 |
| LLPS-Cogr-0280 | Colletotrichum graminicola | 38.38 | 2e-144 | 445 |
| LLPS-Cog-0967 | Colletotrichum gloeosporioides | 38.28 | 6e-146 | 449 |
| LLPS-Trv-1238 | Trichoderma virens | 37.95 | 4e-145 | 447 |
| LLPS-Gag-0331 | Gaeumannomyces graminis | 37.88 | 1e-144 | 446 |
| LLPS-Miv-1199 | Microbotryum violaceum | 37.02 | 5e-147 | 452 |
| LLPS-Ved-0348 | Verticillium dahliae | 36.95 | 3e-147 | 452 |
| LLPS-Asni-1124 | Aspergillus niger | 36.39 | 6e-140 | 434 |
| LLPS-Cus-1627 | Cucumis sativus | 35.05 | 7e-119 | 379 |
| LLPS-Orbr-0639 | Oryza brachyantha | 34.2 | 8e-114 | 366 |
| LLPS-Put-0621 | Puccinia triticina | 33.83 | 3e-113 | 363 |
| LLPS-Tut-1620 | Tursiops truncatus | 33.74 | 3e-112 | 362 |