DrLLPS - Data resource of LLPS

LLPS-Brn-2920

Integrated Annotations

▼ OVERVIEW


Status:	Unreviewed
Ensembl Gene:	GSBRNA2T00099864001
Ensembl Protein:	CDX72371
Organism:	Brassica napus
Taxa ID:	3708
LLPS Type:	Others

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Evidence	Orthologs
Nucleolus	Predicted from orthologs	(View)

Organism	DrLLPS ID	UniProt ID	LLPS type	Condensate	Identity	E-value	Score
Arabidopsis thaliana	LLPS-Art-0764	Q8L860	Client	Nucleolus	98.00	0.0	1121

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	CDX72371	CDX72371

▼ SEQUENCE

Protein Sequence (FASTA)
1 MVNAMVERAT SEMLIGPDWA MNLEICDMLN SDPSQAKDVV KGVKKRIGSR NPKTQLLALT 60 61 LLETIVKNCG DMVHMHVAEK GVIHEMVRIV KKKPDFHVKE KILVLIDTWQ EAFGGPRARY 120 121 PQYYAGYQEL LRAGAVFPQR SERSAPVFTP PQTQPLTSYP PNLRNAGPSN DMPEASVEPD 180 181 FPTLSLSEIQ NAKGLMDVLA EMLSALEPGN KEDLKQEVMV DLVEQCRTYK QRVVHLVNST 240 241 SDESLLSQGL ALNDDLQRVL TSYEAIASGL PGPSVQIEKP KSETGKSLVD VDAPLIDTGD 300 301 SSTQANGATP STSNGILNQL ALPAPPVTNG SANSKIDLLS GDDLALVPVG PPQPASPAAS 360 361 DQNALALIDM FGENTNSPSP ATAPTGNSAL PSSPLNPQPT SQAGEAGLQQ SNGFAPPAGY 420 421 SQFEQPSYGQ GASSPWNSQP AQHLQQPQQP SYEGAQDSMA FPPPPWEAQH QDFSPTAESG 480 481 SPFAPQMHPT QIGFSHAQQY PQMPQNNNSP YPQMPQPGMY MQQPMPNQAN QGYPPQQQQQ 540 541 QQMMMAQFYA QQQQLQQQQQ AYGNQMGGYG YGYNQHQQGS SPYLDQQMHG MSIRDQASHQ 600 601 VPASSSYLPP MKPKNKPEDK LFGDLVDISK FKPGTKPTSG RAGTM 645
Nucleotide CDS Sequence (FASTA)
1 ATGGTGAACG CTATGGTGGA GAGAGCGACG AGCGAGATGC TGATCGGACC TGATTGGGCT 60 61 ATGAACCTCG AGATCTGTGA CATGCTCAAT AGCGATCCTT CGCAAGCAAA AGATGTTGTG 120 121 AAAGGAGTCA AGAAACGGAT TGGTAGCAGG AATCCGAAAA CTCAACTTCT TGCCTTAACA 180 181 CTTCTTGAGA CGATAGTGAA GAACTGTGGT GACATGGTTC ATATGCATGT GGCTGAGAAG 240 241 GGTGTTATTC ATGAGATGGT CCGGATAGTT AAGAAAAAGC CGGACTTCCA TGTCAAAGAG 300 301 AAGATCCTGG TTCTTATTGA TACATGGCAA GAGGCCTTTG GCGGTCCTAG GGCAAGATAT 360 361 CCACAATACT ACGCAGGCTA CCAGGAGTTG TTGCGTGCTG GGGCTGTGTT CCCTCAGAGA 420 421 TCGGAGAGAT CAGCACCTGT GTTCACACCT CCACAAACAC AGCCTTTGAC GTCTTACCCT 480 481 CCAAATCTTC GTAATGCTGG ACCTAGTAAT GATATGCCTG AAGCTTCGGT AGAGCCAGAC 540 541 TTTCCGACAC TGAGTTTGTC GGAGATTCAA AATGCAAAAG GTCTCATGGA TGTGCTTGCT 600 601 GAAATGCTGA GTGCATTAGA GCCGGGGAAC AAGGAGGACC TTAAACAAGA GGTGATGGTC 660 661 GATCTAGTGG AGCAGTGTCG TACATACAAA CAGAGAGTGG TACATTTAGT CAACTCAACT 720 721 TCGGACGAGT CTTTGTTAAG TCAAGGCCTG GCGTTGAATG ACGACTTGCA GCGGGTCTTA 780 781 ACCAGTTACG AAGCAATCGC TTCTGGACTT CCTGGACCTT CTGTTCAAAT CGAAAAGCCA 840 841 AAGTCTGAGA CAGGAAAATC TCTTGTAGAT GTTGATGCCC CACTTATTGA TACTGGGGAC 900 901 AGCAGTACTC AGGCTAACGG AGCTACACCA AGCACTAGTA ACGGGATTCT AAATCAGTTG 960 961 GCCCTGCCTG CACCACCTGT AACTAATGGT TCTGCCAATT CGAAAATAGA CCTCCTCAGT 1020 1021 GGCGATGATC TCGCCCTTGT TCCTGTTGGA CCTCCTCAAC CAGCAAGTCC GGCCGCATCA 1080 1081 GATCAGAATG CACTTGCCCT TATTGATATG TTCGGAGAGA ATACCAATAG TCCGAGTCCT 1140 1141 GCAACTGCAC CAACTGGTAA TTCAGCTCTC CCGAGTAGCC CTCTGAATCC TCAACCAACT 1200 1201 AGTCAAGCTG GAGAAGCTGG ATTACAACAA TCCAATGGAT TTGCTCCTCC AGCGGGTTAT 1260 1261 TCACAGTTTG AGCAGCCATC ATACGGACAA GGGGCCTCGT CTCCTTGGAA TAGTCAGCCT 1320 1321 GCACAGCACT TGCAACAACC ACAACAGCCA TCTTACGAAG GTGCCCAAGA CAGTATGGCA 1380 1381 TTTCCACCTC CCCCATGGGA AGCTCAGCAT CAGGACTTCA GTCCCACTGC AGAGTCAGGA 1440 1441 AGTCCATTTG CTCCTCAAAT GCATCCAACA CAAATTGGCT TCTCACATGC TCAACAATAT 1500 1501 CCTCAAATGC CCCAAAACAA CAACAGTCCA TATCCTCAAA TGCCTCAACC CGGTATGTAC 1560 1561 ATGCAACAGC CAATGCCAAA CCAAGCTAAT CAAGGCTATC CACCCCAACA ACAACAGCAG 1620 1621 CAGCAGATGA TGATGGCTCA GTTCTATGCC CAACAGCAAC AACTACAACA ACAGCAACAG 1680 1681 GCGTATGGAA ACCAGATGGG AGGTTATGGA TACGGTTATA ACCAACATCA ACAAGGAAGC 1740 1741 AGCCCATATC TGGACCAGCA AATGCATGGC ATGTCCATCA GAGACCAGGC GTCGCATCAG 1800 1801 GTACCAGCAT CATCGTCTTA TCTGCCTCCA ATGAAACCTA AGAATAAACC AGAAGATAAG 1860 1861 CTATTTGGGG ATCTAGTTGA CATCTCCAAA TTCAAGCCTG GTACAAAACC TACTTCCGGA 1920 1921 AGAGCTGGTA CCATGTGA 1938

Nucleotide Sequence

>LLPS-Brn-2920|GSBRNA2T00099864001
ATGGTGAACGCTATGGTGGAGAGAGCGACGAGCGAGATGCTGATCGGACCTGATTGGGCTATGAACCTCGAGATCTGTGACATGCTCAATAGCGATCCTTCGCAAGCAAAAGATGTTGTGAAAGGAGTCAAGAAACGGATTGGTAGCAGGAATCCGAAAACTCAACTTCTTGCCTTAACACTTCTTGAGACGATAGTGAAGAACTGTGGTGACATGGTTCATATGCATGTGGCTGAGAAGGGTGTTATTCATGAGATGGTCCGGATAGTTAAGAAAAAGCCGGACTTCCATGTCAAAGAGAAGATCCTGGTTCTTATTGATACATGGCAAGAGGCCTTTGGCGGTCCTAGGGCAAGATATCCACAATACTACGCAGGCTACCAGGAGTTGTTGCGTGCTGGGGCTGTGTTCCCTCAGAGATCGGAGAGATCAGCACCTGTGTTCACACCTCCACAAACACAGCCTTTGACGTCTTACCCTCCAAATCTTCGTAATGCTGGACCTAGTAATGATATGCCTGAAGCTTCGGTAGAGCCAGACTTTCCGACACTGAGTTTGTCGGAGATTCAAAATGCAAAAGGTCTCATGGATGTGCTTGCTGAAATGCTGAGTGCATTAGAGCCGGGGAACAAGGAGGACCTTAAACAAGAGGTGATGGTCGATCTAGTGGAGCAGTGTCGTACATACAAACAGAGAGTGGTACATTTAGTCAACTCAACTTCGGACGAGTCTTTGTTAAGTCAAGGCCTGGCGTTGAATGACGACTTGCAGCGGGTCTTAACCAGTTACGAAGCAATCGCTTCTGGACTTCCTGGACCTTCTGTTCAAATCGAAAAGCCAAAGTCTGAGACAGGAAAATCTCTTGTAGATGTTGATGCCCCACTTATTGATACTGGGGACAGCAGTACTCAGGCTAACGGAGCTACACCAAGCACTAGTAACGGGATTCTAAATCAGTTGGCCCTGCCTGCACCACCTGTAACTAATGGTTCTGCCAATTCGAAAATAGACCTCCTCAGTGGCGATGATCTCGCCCTTGTTCCTGTTGGACCTCCTCAACCAGCAAGTCCGGCCGCATCAGATCAGAATGCACTTGCCCTTATTGATATGTTCGGAGAGAATACCAATAGTCCGAGTCCTGCAACTGCACCAACTGGTAATTCAGCTCTCCCGAGTAGCCCTCTGAATCCTCAACCAACTAGTCAAGCTGGAGAAGCTGGATTACAACAATCCAATGGATTTGCTCCTCCAGCGGGTTATTCACAGTTTGAGCAGCCATCATACGGACAAGGGGCCTCGTCTCCTTGGAATAGTCAGCCTGCACAGCACTTGCAACAACCACAACAGCCATCTTACGAAGGTGCCCAAGACAGTATGGCATTTCCACCTCCCCCATGGGAAGCTCAGCATCAGGACTTCAGTCCCACTGCAGAGTCAGGAAGTCCATTTGCTCCTCAAATGCATCCAACACAAATTGGCTTCTCACATGCTCAACAATATCCTCAAATGCCCCAAAACAACAACAGTCCATATCCTCAAATGCCTCAACCCGGTATGTACATGCAACAGCCAATGCCAAACCAAGCTAATCAAGGCTATCCACCCCAACAACAACAGCAGCAGCAGATGATGATGGCTCAGTTCTATGCCCAACAGCAACAACTACAACAACAGCAACAGGCGTATGGAAACCAGATGGGAGGTTATGGATACGGTTATAACCAACATCAACAAGGAAGCAGCCCATATCTGGACCAGCAAATGCATGGCATGTCCATCAGAGACCAGGCGTCGCATCAGGTACCAGCATCATCGTCTTATCTGCCTCCAATGAAACCTAAGAATAAACCAGAAGATAAGCTATTTGGGGATCTAGTTGACATCTCCAAATTCAAGCCTGGTACAAAACCTACTTCCGGAAGAGCTGGTACCATGTGA

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Bro-2658	Brassica oleracea	100.0	3e-33	139
LLPS-Brr-1351	Brassica rapa	100.0	2e-33	139
LLPS-Art-0764	Arabidopsis thaliana	87.4	0.0	867
LLPS-Arl-0688	Arabidopsis lyrata	86.96	7e-25	114
LLPS-Pot-0250	Populus trichocarpa	67.65	3e-15	83.6
LLPS-Gor-1478	Gossypium raimondii	64.33	0.0	577
LLPS-Thc-1257	Theobroma cacao	63.24	3e-13	77.0
LLPS-Cus-1928	Cucumis sativus	62.69	7e-14	79.3
LLPS-Orr-0995	Oryza rufipogon	62.44	1e-145	446
LLPS-Dac-0398	Daucus carota	62.19	3e-171	511
LLPS-Mae-2267	Manihot esculenta	61.76	6e-12	72.8
LLPS-Phv-2599	Phaseolus vulgaris	61.34	1e-179	533
LLPS-Prp-1034	Prunus persica	61.33	0.0	550
LLPS-Glm-2630	Glycine max	61.27	0.0	563
LLPS-Met-0631	Medicago truncatula	60.8	0.0	566
LLPS-Sol-0506	Solanum lycopersicum	60.57	0.0	547
LLPS-Via-0450	Vigna angularis	60.54	0.0	536
LLPS-Coc-0476	Corchorus capsularis	60.29	2e-11	71.2
LLPS-Nia-1630	Nicotiana attenuata	59.85	0.0	537
LLPS-Viv-1882	Vitis vinifera	59.6	0.0	561
LLPS-Tra-1150	Triticum aestivum	57.56	5e-100	324
LLPS-Hea-2634	Helianthus annuus	56.5	3e-165	495
LLPS-Mua-2391	Musa acuminata	55.96	6e-156	489
LLPS-Vir-1974	Vigna radiata	55.38	5e-10	66.6
LLPS-Brd-0994	Brachypodium distachyon	54.71	4e-140	431
LLPS-Org-1938	Oryza glaberrima	54.33	1e-147	449
LLPS-Ors-0838	Oryza sativa	54.13	5e-147	448
LLPS-Ori-0307	Oryza indica	54.13	5e-147	448
LLPS-Orb-1822	Oryza barthii	54.13	5e-147	448
LLPS-Orgl-0547	Oryza glumaepatula	53.94	3e-146	446
LLPS-Orni-1928	Oryza nivara	53.94	2e-146	446
LLPS-Orbr-1990	Oryza brachyantha	53.89	5e-154	466
LLPS-Lep-0445	Leersia perrieri	53.66	1e-146	446
LLPS-Orp-1926	Oryza punctata	53.08	2e-145	447
LLPS-Sem-2440	Selaginella moellendorffii	53.05	5e-90	291
LLPS-Hov-0194	Hordeum vulgare	52.93	1e-145	444
LLPS-Orm-1754	Oryza meridionalis	52.38	2e-143	441
LLPS-Tru-0151	Triticum urartu	52.03	6e-146	447
LLPS-Sei-1318	Setaria italica	51.77	5e-140	432
LLPS-Zem-0108	Zea mays	50.98	7e-140	432
LLPS-Amt-1096	Amborella trichopoda	50.98	6e-143	437
LLPS-Sob-1266	Sorghum bicolor	50.6	9e-143	438
LLPS-Php-2431	Physcomitrella patens	49.31	1e-105	341
LLPS-Ten-3029	Tetraodon nigroviridis	33.79	3e-31	131
LLPS-Sus-0439	Sus scrofa	33.55	2e-37	150
LLPS-Pof-3242	Poecilia formosa	33.33	1e-36	148
LLPS-Ran-3886	Rattus norvegicus	33.33	1e-36	147
LLPS-Mea-2414	Mesocricetus auratus	33.33	2e-37	149
LLPS-Mum-4589	Mus musculus	33.33	1e-36	147
LLPS-Aon-1011	Aotus nancymaae	33.12	3e-38	152
LLPS-Poa-1285	Pongo abelii	33.0	2e-34	141
LLPS-Xim-2943	Xiphophorus maculatus	33.0	4e-36	146
LLPS-Cap-1508	Cavia porcellus	32.99	1e-31	133
LLPS-Orn-3980	Oreochromis niloticus	32.99	3e-37	149
LLPS-Dar-1905	Danio rerio	32.8	7e-37	148
LLPS-Cas-0683	Carlito syrichta	32.79	9e-35	142
LLPS-Mam-4192	Macaca mulatta	32.79	7e-35	142
LLPS-Rhb-1827	Rhinopithecus bieti	32.79	7e-35	142
LLPS-Fec-3588	Felis catus	32.79	4e-34	140
LLPS-Pat-1934	Pan troglodytes	32.79	8e-35	142
LLPS-Pap-4162	Pan paniscus	32.79	6e-35	142
LLPS-Hos-3164	Homo sapiens	32.79	6e-35	142
LLPS-Man-3820	Macaca nemestrina	32.79	5e-35	142
LLPS-Paa-3134	Papio anubis	32.79	5e-35	142
LLPS-Mal-2546	Mandrillus leucophaeus	32.79	5e-35	142
LLPS-Gog-0915	Gorilla gorilla	32.79	6e-35	142
LLPS-Caj-0145	Callithrix jacchus	32.79	5e-35	143
LLPS-Chs-3979	Chlorocebus sabaeus	32.79	8e-35	142
LLPS-Maf-0821	Macaca fascicularis	32.79	6e-35	142
LLPS-Cea-0245	Cercocebus atys	32.79	5e-35	142
LLPS-Tar-2238	Takifugu rubripes	32.65	1e-35	144
LLPS-Ict-3126	Ictidomys tridecemlineatus	32.47	2e-35	144
LLPS-Eqc-4168	Equus caballus	32.47	1e-34	142
LLPS-Aim-0602	Ailuropoda melanoleuca	32.36	5e-35	142
LLPS-Tag-1174	Taeniopygia guttata	32.34	9e-36	144
LLPS-Lac-2385	Latimeria chalumnae	32.34	2e-35	144
LLPS-Mod-1594	Monodelphis domestica	32.34	5e-28	122
LLPS-Anc-0716	Anolis carolinensis	32.32	3e-35	143
LLPS-Leo-0055	Lepisosteus oculatus	32.32	1e-35	144
LLPS-Gaa-3117	Gasterosteus aculeatus	32.31	6e-32	134
LLPS-Orc-1618	Oryctolagus cuniculus	32.29	3e-30	129
LLPS-Caf-2993	Canis familiaris	32.18	2e-35	144
LLPS-Nol-2312	Nomascus leucogenys	32.17	1e-32	135
LLPS-Otg-1338	Otolemur garnettii	32.14	7e-34	139
LLPS-Fud-2194	Fukomys damarensis	32.14	2e-34	141
LLPS-Xet-1647	Xenopus tropicalis	32.05	2e-35	144
LLPS-Mup-4232	Mustela putorius furo	32.05	6e-35	142
LLPS-Scf-2904	Scleropages formosus	31.91	5e-38	151
LLPS-Bot-1865	Bos taurus	31.83	2e-39	156
LLPS-Gaga-1937	Gallus gallus	31.82	1e-35	145
LLPS-Pes-1780	Pelodiscus sinensis	31.82	4e-34	140
LLPS-Fia-0519	Ficedula albicollis	31.82	1e-35	145
LLPS-Anp-2195	Anas platyrhynchos	31.65	3e-35	143
LLPS-Orl-0391	Oryzias latipes	31.65	2e-34	141
LLPS-Ova-3278	Ovis aries	31.58	1e-29	127
LLPS-Scm-1121	Scophthalmus maximus	31.56	3e-34	140
LLPS-Icp-0397	Ictalurus punctatus	31.19	6e-35	142
LLPS-Ora-2735	Ornithorhynchus anatinus	31.02	6e-32	134
LLPS-Asm-4195	Astyanax mexicanus	30.77	5e-35	142
LLPS-Scj-0091	Schizosaccharomyces japonicus	28.85	9e-11	68.9
LLPS-Scc-1335	Schizosaccharomyces cryophilus	27.36	5e-15	82.4
LLPS-Nec-0672	Neurospora crassa	25.17	2e-17	90.5
LLPS-Myl-3303	Myotis lucifugus	24.83	8e-12	72.4
LLPS-Sac-0641	Saccharomyces cerevisiae	24.81	3e-13	76.6
LLPS-Trv-0577	Trichoderma virens	24.27	8e-20	97.8
LLPS-Coo-0805	Colletotrichum orbiculare	24.07	2e-13	77.8
LLPS-Scp-0539	Schizosaccharomyces pombe	21.65	8e-10	65.9

LLPS-Brn-2920

Protein Sequence

Nucleotide Sequence