LLPS-Brn-2892
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Ensembl Gene: | GSBRNA2T00154166001 |
Ensembl Protein: | CDX92404 |
Organism: | Brassica napus |
Taxa ID: | 3708 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Stress granule | Predicted from orthologs | (View) |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MAETEGSLAD DREVIGGFET KSPWKTTASP VETVDAPVMG AHSWPALADA QQPRPKNLPT 60 61 AAPPSKSIPA SIPAPAQGVA GQGKSKGGGK GNPAHKNLSG RHSKPGPKSN QSGPPPPPPP 120 121 YVMHGVPYHP SPFPPMVPPP HATGPDFPYA PYPPYPVPGA PVAESGNEKK AQASPLPPVL 180 181 PAPQGDHPGQ PWQDQRGFGP RNMPHGAAGP RNFVRPPFMG QAPGFMVGPG SGFPGPVYYL 240 241 PVPPPGAIRG YPLRYAPYPV NQADSSGNFL EYFSALSPSL LVNWVAPHLA MLTICVFLPF 300 301 FSDENLQNDK YLISLMDKQE GWVPIKIIAD FKRVKMMTMD VEFIVYALGY SSSVEVQGEK 360 361 IRRRDEWAKW VPASKRSDSE EKVGDNDGDS PESTTSRDNS EKQSNDTSKP TACSSEVQGA 420 421 QPSRTDANGS DILKSSSSEQ RNMDDLSTDF SNTFLLDEEI DLEHKSPRRS GLSVCKRIED 480 481 EDDDIAVDDH DHDIQKLVIV TQNSERSDGT GISGTKAKNI PKELASTIND GLYYFEQELK 540 541 KNRPGRKKNN SHLDSRDGKV KGGGLNIKLG ENSAANGGEE HSIRRKQNKG THKNQMAHVR 600 601 RFFSGNTRNH GAVSESPPSS SIGFFFGSTP PDSHGHRLSK LSSSPQYSLS GSSPPVGSLP 660 661 KSFPHFQHPS HQLLEENGFK QEKYLKYRKR CLNERKKLGS GCSEEMNHLY RFWSYFLRET 720 721 FVPSMYEDFQ KFALEDAAGN YNYGLECLFR FYSYGLEKQF DEDLYKDFEQ LTLDFYHKGN 780 781 LYGLEKYWAF HHYRGQKEPI KKHPELEKLL KEEYRSLDDF RAKDSVTSQK ENKSH 835 |
Nucleotide CDS Sequence (FASTA) |
1 ATGGCGGAGA CTGAGGGATC ATTGGCCGAT GATCGAGAAG TGATCGGCGG TTTCGAGACT 60 61 AAGTCTCCAT GGAAAACAAC TGCTTCTCCT GTGGAAACCG TCGACGCTCC GGTAATGGGT 120 121 GCTCACTCGT GGCCTGCTCT CGCCGACGCG CAGCAACCGC GTCCTAAGAA TCTTCCGACG 180 181 GCGGCTCCGC CGTCTAAATC CATTCCGGCC TCAATCCCAG CTCCTGCTCA GGGTGTAGCT 240 241 GGTCAAGGGA AGTCTAAGGG TGGTGGAAAG GGCAACCCTG CGCACAAGAA TCTATCTGGC 300 301 CGTCATTCAA AGCCAGGCCC GAAGAGCAAC CAAAGTGGTC CTCCTCCTCC CCCTCCTCCT 360 361 TACGTGATGC ACGGTGTACC TTATCATCCC TCTCCTTTTC CACCAATGGT GCCTCCCCCG 420 421 CATGCTACTG GTCCAGATTT TCCGTATGCT CCTTATCCTC CTTACCCGGT TCCCGGAGCT 480 481 CCTGTTGCAG AGTCTGGCAA TGAGAAGAAA GCTCAAGCTT CCCCTCTTCC ACCTGTTTTG 540 541 CCAGCTCCTC AGGGAGACCA CCCTGGACAG CCTTGGCAGG ATCAGAGGGG GTTTGGCCCC 600 601 AGGAACATGC CACATGGCGC TGCTGGACCG AGGAATTTCG TGAGACCTCC GTTTATGGGA 660 661 CAAGCTCCTG GGTTCATGGT TGGTCCAGGT TCAGGATTTC CCGGGCCTGT ATACTATTTG 720 721 CCGGTTCCAC CCCCTGGAGC TATTAGAGGT TATCCTCTAC GTTATGCTCC ATACCCTGTT 780 781 AACCAGGCTG ACTCCTCTGG GAATTTCTTG GAATATTTCT CTGCGTTGAG TCCATCTTTG 840 841 CTAGTTAATT GGGTGGCACC TCATCTTGCC ATGCTCACCA TATGTGTATT TCTTCCTTTT 900 901 TTCAGTGATG AAAACCTTCA GAATGATAAG TACCTCATAT CCTTGATGGA TAAACAAGAA 960 961 GGATGGGTTC CCATAAAAAT TATAGCTGAC TTCAAAAGGG TTAAGATGAT GACGATGGAT 1020 1021 GTAGAGTTTA TTGTCTATGC GTTGGGATAT TCTAGTTCTG TTGAAGTGCA GGGTGAGAAG 1080 1081 ATACGCAGGC GAGACGAGTG GGCTAAGTGG GTTCCTGCAT CTAAAAGGTC AGACTCTGAG 1140 1141 GAAAAAGTTG GAGACAATGA CGGAGATTCC CCAGAGAGTA CAACAAGCAG AGATAACTCT 1200 1201 GAAAAACAGT CAAATGATAC TTCAAAGCCT ACTGCGTGCT CTTCAGAGGT ACAGGGAGCT 1260 1261 CAGCCATCAA GAACCGATGC TAATGGAAGT GATATCCTGA AATCATCATC AAGCGAACAA 1320 1321 AGAAATATGG ATGACTTGTC AACCGATTTT TCAAATACTT TCTTGCTTGA TGAGGAAATA 1380 1381 GATCTGGAGC ATAAAAGCCC TAGAAGGAGT GGACTTTCCG TGTGCAAAAG AATTGAGGAT 1440 1441 GAAGACGATG ATATTGCTGT TGATGATCAT GATCATGATA TTCAGAAACT TGTAATTGTC 1500 1501 ACCCAGAATA GTGAGAGAAG TGATGGCACT GGAATCAGTG GGACAAAAGC AAAAAACATT 1560 1561 CCTAAGGAGC TTGCCTCCAC TATAAACGAC GGTCTTTACT ACTTTGAGCA GGAGCTGAAA 1620 1621 AAGAATCGAC CTGGTCGTAA GAAGAACAAT TCCCATTTAG ATAGCAGAGA TGGAAAAGTG 1680 1681 AAAGGCGGAG GACTGAACAT TAAACTAGGT GAAAATTCCG CAGCGAATGG AGGTGAAGAG 1740 1741 CATAGTATTA GGAGGAAGCA AAATAAGGGA ACCCACAAAA ATCAAATGGC CCATGTACGG 1800 1801 AGGTTCTTTT CCGGCAACAC AAGGAACCAT GGGGCTGTTT CTGAAAGTCC GCCTAGTAGC 1860 1861 TCCATTGGAT TTTTCTTTGG TTCTACACCA CCAGACAGTC ATGGCCACAG GCTTTCAAAA 1920 1921 TTGAGTTCAT CACCACAGTA CTCTCTCTCT GGCAGCAGTC CACCTGTGGG GTCTTTACCA 1980 1981 AAATCATTTC CACATTTTCA ACATCCGAGC CACCAACTGC TTGAAGAGAA TGGGTTTAAG 2040 2041 CAAGAAAAGT ACTTGAAGTA TCGCAAGCGG TGCTTAAACG AAAGAAAGAA GCTGGGCAGC 2100 2101 GGATGCAGTG AGGAAATGAA TCATTTGTAC CGATTCTGGT CGTATTTCCT CAGAGAAACG 2160 2161 TTTGTTCCGT CTATGTATGA AGATTTCCAG AAGTTTGCTC TTGAGGATGC AGCTGGCAAT 2220 2221 TACAACTATG GGTTGGAGTG TCTCTTTAGG TTCTATAGCT ATGGCCTGGA GAAGCAATTC 2280 2281 GATGAAGACC TTTACAAGGA CTTTGAGCAG CTAACACTTG ACTTCTACCA CAAGGGTAAC 2340 2341 CTATATGGCT TGGAGAAATA TTGGGCTTTC CACCATTACC GAGGGCAAAA AGAACCGATA 2400 2401 AAGAAGCACC CTGAGCTAGA GAAGCTACTG AAGGAAGAAT ACCGCAGCTT AGATGATTTC 2460 2461 CGAGCCAAGG ATTCAGTGAC CAGCCAAAAA GAAAACAAGT CTCACTGA 2508 |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Brr-0623 | Brassica rapa | 99.04 | 0.0 | 1319 |
LLPS-Bro-2181 | Brassica oleracea | 90.78 | 0.0 | 1172 |
LLPS-Glm-0188 | Glycine max | 82.42 | 5e-75 | 268 |
LLPS-Via-0768 | Vigna angularis | 79.39 | 4e-72 | 260 |
LLPS-Php-1444 | Physcomitrella patens | 75.76 | 2e-63 | 236 |
LLPS-Arl-0308 | Arabidopsis lyrata | 72.46 | 0.0 | 882 |
LLPS-Art-0526 | Arabidopsis thaliana | 72.35 | 0.0 | 904 |
LLPS-Aon-0707 | Aotus nancymaae | 70.97 | 4e-06 | 55.1 |
LLPS-Leo-1357 | Lepisosteus oculatus | 66.41 | 7e-51 | 197 |
LLPS-Sem-0536 | Selaginella moellendorffii | 65.15 | 1e-55 | 196 |
LLPS-Chr-1462 | Chlamydomonas reinhardtii | 64.93 | 2e-49 | 193 |
LLPS-Orn-3979 | Oreochromis niloticus | 64.12 | 2e-49 | 192 |
LLPS-Scf-0263 | Scleropages formosus | 63.36 | 3e-49 | 192 |
LLPS-Xet-2325 | Xenopus tropicalis | 63.36 | 1e-48 | 190 |
LLPS-Ten-1290 | Tetraodon nigroviridis | 63.36 | 6e-48 | 188 |
LLPS-Tag-0224 | Taeniopygia guttata | 63.28 | 8e-48 | 187 |
LLPS-Tar-0062 | Takifugu rubripes | 62.6 | 1e-47 | 187 |
LLPS-Gaa-1651 | Gasterosteus aculeatus | 62.6 | 1e-46 | 184 |
LLPS-Gaga-1109 | Gallus gallus | 62.6 | 2e-48 | 190 |
LLPS-Fia-1179 | Ficedula albicollis | 62.6 | 2e-48 | 188 |
LLPS-Scm-1143 | Scophthalmus maximus | 62.6 | 6e-48 | 188 |
LLPS-Orl-3431 | Oryzias latipes | 61.83 | 1e-47 | 187 |
LLPS-Anc-0727 | Anolis carolinensis | 61.83 | 9e-48 | 187 |
LLPS-Pes-0139 | Pelodiscus sinensis | 61.83 | 7e-47 | 184 |
LLPS-Anp-1379 | Anas platyrhynchos | 61.65 | 1e-46 | 183 |
LLPS-Mua-1100 | Musa acuminata | 61.59 | 1e-86 | 286 |
LLPS-Xim-1846 | Xiphophorus maculatus | 61.07 | 2e-47 | 187 |
LLPS-Drm-0140 | Drosophila melanogaster | 61.07 | 3e-47 | 187 |
LLPS-Lac-0056 | Latimeria chalumnae | 61.07 | 1e-47 | 187 |
LLPS-Pof-3020 | Poecilia formosa | 61.07 | 2e-47 | 187 |
LLPS-Sei-1987 | Setaria italica | 60.47 | 1e-54 | 197 |
LLPS-Asm-1611 | Astyanax mexicanus | 60.31 | 8e-47 | 185 |
LLPS-Meg-0675 | Meleagris gallopavo | 59.85 | 3e-46 | 182 |
LLPS-Amt-1490 | Amborella trichopoda | 59.5 | 2e-85 | 300 |
LLPS-Dac-1572 | Daucus carota | 57.61 | 7e-96 | 326 |
LLPS-Icp-0522 | Ictalurus punctatus | 56.71 | 1e-52 | 203 |
LLPS-Dar-2707 | Danio rerio | 56.44 | 5e-53 | 188 |
LLPS-Urm-0841 | Ursus maritimus | 56.25 | 6e-49 | 191 |
LLPS-Osl-0461 | Ostreococcus lucimarinus | 55.15 | 9e-51 | 181 |
LLPS-Ora-2269 | Ornithorhynchus anatinus | 55.0 | 3e-48 | 189 |
LLPS-Sah-1571 | Sarcophilus harrisii | 55.0 | 5e-48 | 188 |
LLPS-Mod-0649 | Monodelphis domestica | 55.0 | 4e-48 | 188 |
LLPS-Abg-1123 | Absidia glauca | 54.22 | 1e-48 | 189 |
LLPS-Sus-1050 | Sus scrofa | 53.76 | 5e-50 | 194 |
LLPS-Cis-0991 | Ciona savignyi | 53.38 | 3e-41 | 156 |
LLPS-Ran-3456 | Rattus norvegicus | 53.18 | 9e-50 | 193 |
LLPS-Ova-1245 | Ovis aries | 53.18 | 1e-49 | 192 |
LLPS-Aim-0238 | Ailuropoda melanoleuca | 53.18 | 1e-49 | 193 |
LLPS-Mal-1782 | Mandrillus leucophaeus | 53.18 | 2e-49 | 192 |
LLPS-Paa-1658 | Papio anubis | 53.18 | 1e-49 | 194 |
LLPS-Tut-0747 | Tursiops truncatus | 53.18 | 2e-49 | 192 |
LLPS-Bot-3533 | Bos taurus | 53.18 | 1e-49 | 194 |
LLPS-Dio-0487 | Dipodomys ordii | 53.18 | 4e-48 | 188 |
LLPS-Gog-3400 | Gorilla gorilla | 53.18 | 2e-49 | 192 |
LLPS-Caj-0477 | Callithrix jacchus | 53.18 | 1e-49 | 194 |
LLPS-Fud-1014 | Fukomys damarensis | 53.18 | 1e-49 | 192 |
LLPS-Chs-0909 | Chlorocebus sabaeus | 53.18 | 2e-49 | 192 |
LLPS-Mum-3276 | Mus musculus | 53.18 | 8e-50 | 194 |
LLPS-Maf-0108 | Macaca fascicularis | 53.18 | 2e-49 | 193 |
LLPS-Mea-0420 | Mesocricetus auratus | 53.18 | 8e-50 | 194 |
LLPS-Cea-1357 | Cercocebus atys | 53.18 | 1e-49 | 194 |
LLPS-Cas-2072 | Carlito syrichta | 53.18 | 9e-50 | 194 |
LLPS-Nol-1508 | Nomascus leucogenys | 53.18 | 2e-49 | 192 |
LLPS-Ict-3529 | Ictidomys tridecemlineatus | 53.18 | 2e-49 | 192 |
LLPS-Cap-1464 | Cavia porcellus | 53.18 | 1e-49 | 192 |
LLPS-Eqc-0061 | Equus caballus | 53.18 | 5e-50 | 195 |
LLPS-Caf-3818 | Canis familiaris | 53.18 | 1e-49 | 193 |
LLPS-Mam-2636 | Macaca mulatta | 53.18 | 1e-49 | 192 |
LLPS-Otg-1208 | Otolemur garnettii | 53.18 | 1e-49 | 193 |
LLPS-Rhb-3457 | Rhinopithecus bieti | 53.18 | 2e-49 | 192 |
LLPS-Orc-1707 | Oryctolagus cuniculus | 53.18 | 9e-50 | 194 |
LLPS-Fec-0037 | Felis catus | 53.18 | 1e-49 | 194 |
LLPS-Hos-0754 | Homo sapiens | 53.18 | 2e-49 | 192 |
LLPS-Pap-2097 | Pan paniscus | 53.18 | 2e-49 | 192 |
LLPS-Pat-1197 | Pan troglodytes | 53.18 | 1e-49 | 193 |
LLPS-Loa-0611 | Loxodonta africana | 53.18 | 1e-49 | 193 |
LLPS-Man-0034 | Macaca nemestrina | 53.18 | 2e-49 | 192 |
LLPS-Thc-0370 | Theobroma cacao | 52.73 | 5e-174 | 533 |
LLPS-Cus-0715 | Cucumis sativus | 52.24 | 5e-10 | 66.6 |
LLPS-Mup-0099 | Mustela putorius furo | 51.45 | 1e-49 | 193 |
LLPS-Met-1440 | Medicago truncatula | 51.41 | 2e-140 | 446 |
LLPS-Coc-0314 | Corchorus capsularis | 51.39 | 1e-15 | 84.7 |
LLPS-Gor-1853 | Gossypium raimondii | 50.91 | 3e-169 | 521 |
LLPS-Poa-3071 | Pongo abelii | 50.87 | 2e-49 | 189 |
LLPS-Pot-2678 | Populus trichocarpa | 50.7 | 6e-11 | 69.3 |
LLPS-Lep-1269 | Leersia perrieri | 50.3 | 5e-71 | 257 |
LLPS-Myl-3149 | Myotis lucifugus | 50.29 | 1e-47 | 187 |
LLPS-Nia-0978 | Nicotiana attenuata | 50.22 | 4e-141 | 447 |
LLPS-Prp-1586 | Prunus persica | 50.0 | 9e-159 | 494 |
LLPS-Orm-0437 | Oryza meridionalis | 49.85 | 5e-68 | 248 |
LLPS-Viv-0247 | Vitis vinifera | 49.67 | 3e-153 | 480 |
LLPS-Ori-0034 | Oryza indica | 49.56 | 1e-67 | 247 |
LLPS-Org-0891 | Oryza glaberrima | 49.56 | 1e-67 | 247 |
LLPS-Ors-1391 | Oryza sativa | 49.56 | 8e-68 | 247 |
LLPS-Mae-0575 | Manihot esculenta | 49.25 | 1e-09 | 65.5 |
LLPS-Orgl-1238 | Oryza glumaepatula | 48.97 | 1e-68 | 250 |
LLPS-Orni-0342 | Oryza nivara | 48.97 | 1e-68 | 249 |
LLPS-Orb-0284 | Oryza barthii | 48.97 | 1e-68 | 250 |
LLPS-Orr-1213 | Oryza rufipogon | 48.97 | 1e-68 | 249 |
LLPS-Cii-0677 | Ciona intestinalis | 48.75 | 6e-42 | 164 |
LLPS-Cae-0410 | Caenorhabditis elegans | 48.7 | 1e-35 | 150 |
LLPS-Sol-2150 | Solanum lycopersicum | 48.68 | 1e-14 | 82.0 |
LLPS-Tra-1206 | Triticum aestivum | 48.67 | 1e-69 | 253 |
LLPS-Hea-0174 | Helianthus annuus | 48.61 | 1e-15 | 82.4 |
LLPS-Orbr-2021 | Oryza brachyantha | 48.51 | 7e-67 | 244 |
LLPS-Phv-0047 | Phaseolus vulgaris | 47.79 | 3e-136 | 435 |
LLPS-Vir-1942 | Vigna radiata | 46.82 | 5e-132 | 425 |
LLPS-Sot-0337 | Solanum tuberosum | 46.74 | 2e-14 | 81.6 |
LLPS-Brd-0041 | Brachypodium distachyon | 46.59 | 2e-65 | 241 |
LLPS-Scp-0599 | Schizosaccharomyces pombe | 46.27 | 5e-06 | 53.5 |
LLPS-Spr-0947 | Sporisorium reilianum | 45.71 | 5e-09 | 64.3 |
LLPS-Orp-1418 | Oryza punctata | 44.81 | 5e-53 | 202 |
LLPS-Hov-1064 | Hordeum vulgare | 44.5 | 3e-70 | 255 |
LLPS-Usm-0983 | Ustilago maydis | 44.29 | 2e-07 | 59.3 |
LLPS-Scc-0040 | Schizosaccharomyces cryophilus | 44.12 | 7e-07 | 56.2 |
LLPS-Sob-0456 | Sorghum bicolor | 43.93 | 8e-53 | 202 |
LLPS-Pyt-1123 | Pyrenophora teres | 41.56 | 2e-07 | 58.9 |
LLPS-Zem-1278 | Zea mays | 40.54 | 1e-09 | 65.5 |
LLPS-Nef-0467 | Neosartorya fischeri | 38.89 | 7e-10 | 67.0 |
LLPS-Tum-1010 | Tuber melanosporum | 38.18 | 1e-11 | 72.8 |
LLPS-Scs-0939 | Sclerotinia sclerotiorum | 38.16 | 2e-08 | 62.4 |
LLPS-Fuv-0525 | Fusarium verticillioides | 37.78 | 7e-08 | 60.5 |
LLPS-Asfu-0353 | Aspergillus fumigatus | 37.04 | 3e-09 | 65.1 |
LLPS-Zyt-0520 | Zymoseptoria tritici | 36.17 | 1e-09 | 66.2 |
LLPS-Mel-1042 | Melampsora laricipopulina | 36.14 | 6e-08 | 60.8 |
LLPS-Asc-1350 | Aspergillus clavatus | 34.26 | 3e-08 | 62.0 |
LLPS-Yal-1588 | Yarrowia lipolytica | 34.07 | 4e-07 | 57.4 |