LLPS-Brn-2699
BnaC06g24350D
Integrated Annotations
▼ OVERVIEW
| Status: | Unreviewed |
| Protein Name: | 40S ribosomal protein SA |
| Gene Name: | BnaC06g24350D, GSBRNA2T00097197001 |
| Ensembl Gene: | GSBRNA2T00103331001 |
| Ensembl Protein: | CDX72910 |
| Organism: | Brassica napus |
| Taxa ID: | 3708 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Evidence | Orthologs |
|---|---|---|
| Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
| Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | CDX72910 | CDX72910 |
| UniProt | A0A078IL52, A0A078IL52_BRANA | |
| GeneBank | LK032928 | CDY50642.1 |
| RefSeq | XM_013832923.1 | XP_013688377.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MATNGSAQLS QKEADIKMMC AAEVHLGTKN CNYQMERYVF KRRNDGIYIF NLGKTWEKLM 60 61 MAARVIVAIE NPQDIIVQSA RPYGQRAVLK FAQYTGANAI AGRHTPGTFT NQMQTSFSEP 120 121 RLLILTDPRT DHQPIKEGAL GNIPIIAFCD TDSPMRFVDI GIPANNKGKH SIGCLFWLLA 180 181 RMVLQMRGTI RPAQKWDVMV DLFFYREPEE AKPEDEDEVA PQAEFGLPAP EYGGGDQWTT 240 241 AAIPDAAWPG EAQAPISAAP AAGSWNDSAA PAAAEGGWDA AVPPTTAVTN WE 292 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGCGACTA ACGGATCTGC TCAGCTTTCC CAGAAGGAAG CTGACATCAA GATGATGTGC 60 61 GCTGCTGAGG TTCACCTCGG AACCAAGAAC TGCAACTACC AAATGGAGCG TTACGTCTTC 120 121 AAGAGACGCA ACGACGGGAT TTACATCTTT AACCTTGGCA AGACATGGGA GAAGCTGATG 180 181 ATGGCTGCAC GAGTCATCGT TGCTATCGAG AACCCACAAG ACATCATTGT GCAGTCAGCT 240 241 AGGCCCTATG GTCAGAGAGC TGTTTTGAAG TTCGCTCAGT ACACTGGAGC CAACGCCATT 300 301 GCTGGAAGGC ACACTCCTGG TACTTTCACC AATCAGATGC AGACTTCGTT CAGCGAGCCA 360 361 AGGCTTTTGA TTCTCACTGA TCCACGTACC GACCACCAGC CTATCAAGGA AGGTGCTTTG 420 421 GGAAACATTC CAATCATTGC TTTCTGTGAC ACTGACTCTC CCATGAGGTT TGTTGACATT 480 481 GGTATCCCCG CCAACAACAA GGGAAAGCAC AGCATTGGTT GTCTCTTCTG GCTTCTTGCT 540 541 CGCATGGTCC TTCAGATGCG TGGAACCATT CGCCCTGCTC AGAAGTGGGA TGTCATGGTT 600 601 GACCTGTTCT TCTACAGGGA GCCCGAGGAG GCCAAGCCAG AGGATGAGGA TGAAGTTGCA 660 661 CCTCAGGCTG AGTTTGGACT ACCTGCTCCT GAGTATGGAG GTGGAGACCA GTGGACCACT 720 721 GCTGCTATCC CTGATGCCGC ATGGCCTGGA GAAGCTCAGG CGCCGATCTC CGCTGCTCCC 780 781 GCCGCTGGTT CATGGAATGA TTCCGCTGCT CCAGCTGCAG CAGAAGGTGG ATGGGACGCG 840 841 GCTGTGCCAC CCACAACTGC AGTGACCAAT TGGGAATAA 879 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Cytosolic small ribosomal subunit | |
Molecular Function | Structural constituent of ribosome | |
Biological Process | Ribosomal small subunit assembly | |
Biological Process | Translation |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Bro-0197 | Brassica oleracea | 99.32 | 0.0 | 516 |
| LLPS-Brr-2288 | Brassica rapa | 96.27 | 9e-165 | 466 |
| LLPS-Arl-0656 | Arabidopsis lyrata | 94.14 | 4e-168 | 475 |
| LLPS-Art-0585 | Arabidopsis thaliana | 93.39 | 3e-162 | 461 |
| LLPS-Via-0727 | Vigna angularis | 90.45 | 3e-133 | 387 |
| LLPS-Phv-1106 | Phaseolus vulgaris | 89.95 | 2e-132 | 385 |
| LLPS-Glm-0381 | Glycine max | 89.45 | 2e-132 | 385 |
| LLPS-Org-0482 | Oryza glaberrima | 89.39 | 2e-128 | 375 |
| LLPS-Orr-0097 | Oryza rufipogon | 89.39 | 2e-128 | 375 |
| LLPS-Orm-0048 | Oryza meridionalis | 89.39 | 4e-129 | 377 |
| LLPS-Orp-2212 | Oryza punctata | 89.39 | 9e-129 | 376 |
| LLPS-Ors-0710 | Oryza sativa | 89.39 | 2e-128 | 375 |
| LLPS-Sei-1022 | Setaria italica | 89.39 | 4e-129 | 377 |
| LLPS-Orgl-0054 | Oryza glumaepatula | 89.39 | 6e-129 | 376 |
| LLPS-Orb-1622 | Oryza barthii | 89.39 | 2e-128 | 375 |
| LLPS-Ori-0941 | Oryza indica | 89.39 | 2e-128 | 375 |
| LLPS-Orbr-0058 | Oryza brachyantha | 88.89 | 2e-128 | 375 |
| LLPS-Sob-1184 | Sorghum bicolor | 88.89 | 1e-128 | 375 |
| LLPS-Brd-0814 | Brachypodium distachyon | 88.61 | 8e-131 | 381 |
| LLPS-Sem-0979 | Selaginella moellendorffii | 86.36 | 6e-128 | 370 |
| LLPS-Thc-0538 | Theobroma cacao | 85.06 | 6e-138 | 399 |
| LLPS-Php-1506 | Physcomitrella patens | 83.59 | 9e-120 | 353 |
| LLPS-Hea-0134 | Helianthus annuus | 83.2 | 8e-136 | 393 |
| LLPS-Amt-0911 | Amborella trichopoda | 83.06 | 4e-137 | 397 |
| LLPS-Dac-0876 | Daucus carota | 83.03 | 7e-118 | 347 |
| LLPS-Lep-0806 | Leersia perrieri | 82.48 | 2e-130 | 380 |
| LLPS-Pot-0788 | Populus trichocarpa | 82.16 | 1e-135 | 394 |
| LLPS-Cus-0645 | Cucumis sativus | 81.63 | 9e-137 | 396 |
| LLPS-Prp-1731 | Prunus persica | 81.48 | 9e-135 | 390 |
| LLPS-Met-0004 | Medicago truncatula | 80.74 | 6e-136 | 394 |
| LLPS-Viv-0550 | Vitis vinifera | 80.5 | 4e-132 | 384 |
| LLPS-Nia-1391 | Nicotiana attenuata | 80.08 | 1e-133 | 388 |
| LLPS-Vir-1325 | Vigna radiata | 79.84 | 3e-133 | 387 |
| LLPS-Sot-0202 | Solanum tuberosum | 79.67 | 9e-134 | 388 |
| LLPS-Sol-0368 | Solanum lycopersicum | 79.67 | 4e-135 | 390 |
| LLPS-Orni-0087 | Oryza nivara | 79.27 | 9e-130 | 379 |
| LLPS-Gor-0598 | Gossypium raimondii | 79.17 | 2e-138 | 400 |
| LLPS-Mua-0169 | Musa acuminata | 79.15 | 2e-125 | 367 |
| LLPS-Coc-0276 | Corchorus capsularis | 79.1 | 3e-139 | 402 |
| LLPS-Mae-0170 | Manihot esculenta | 78.68 | 1e-133 | 389 |
| LLPS-Tra-0196 | Triticum aestivum | 77.46 | 3e-131 | 382 |
| LLPS-Tru-0495 | Triticum urartu | 77.24 | 5e-131 | 382 |
| LLPS-Hov-0915 | Hordeum vulgare | 76.83 | 3e-129 | 380 |
| LLPS-Osl-0233 | Ostreococcus lucimarinus | 75.38 | 1e-108 | 324 |
| LLPS-Zem-0747 | Zea mays | 71.18 | 3e-129 | 377 |
| LLPS-Chr-0857 | Chlamydomonas reinhardtii | 70.0 | 5e-108 | 322 |
| LLPS-Blg-0068 | Blumeria graminis | 64.25 | 1e-86 | 268 |
| LLPS-Trr-0188 | Trichoderma reesei | 63.73 | 4e-86 | 266 |
| LLPS-Ast-0384 | Aspergillus terreus | 63.73 | 4e-86 | 266 |
| LLPS-Drm-0970 | Drosophila melanogaster | 63.73 | 1e-91 | 280 |
| LLPS-Coo-0153 | Colletotrichum orbiculare | 63.73 | 2e-86 | 267 |
| LLPS-Cis-1355 | Ciona savignyi | 63.24 | 9e-93 | 283 |
| LLPS-Trv-0157 | Trichoderma virens | 63.21 | 2e-85 | 265 |
| LLPS-Beb-0827 | Beauveria bassiana | 63.21 | 7e-85 | 263 |
| LLPS-Asni-0013 | Aspergillus niger | 63.21 | 8e-86 | 266 |
| LLPS-Scs-0441 | Sclerotinia sclerotiorum | 63.21 | 1e-85 | 265 |
| LLPS-Miv-0753 | Microbotryum violaceum | 63.18 | 2e-85 | 265 |
| LLPS-Xim-1422 | Xiphophorus maculatus | 63.13 | 4e-88 | 272 |
| LLPS-Ova-3243 | Ovis aries | 62.89 | 5e-68 | 220 |
| LLPS-Asm-2060 | Astyanax mexicanus | 62.75 | 2e-89 | 276 |
| LLPS-Cii-0776 | Ciona intestinalis | 62.75 | 6e-92 | 282 |
| LLPS-Cogr-0267 | Colletotrichum graminicola | 62.69 | 3e-85 | 264 |
| LLPS-Asn-0068 | Aspergillus nidulans | 62.69 | 1e-85 | 265 |
| LLPS-Scf-0364 | Scleropages formosus | 62.63 | 1e-88 | 275 |
| LLPS-Icp-0264 | Ictalurus punctatus | 62.25 | 1e-88 | 273 |
| LLPS-Fus-0068 | Fusarium solani | 62.18 | 1e-86 | 268 |
| LLPS-Nec-0055 | Neurospora crassa | 62.18 | 1e-85 | 265 |
| LLPS-Gag-1229 | Gaeumannomyces graminis | 62.18 | 7e-86 | 266 |
| LLPS-Xet-0417 | Xenopus tropicalis | 62.12 | 1e-88 | 273 |
| LLPS-Chc-0063 | Chondrus crispus | 61.88 | 2e-89 | 276 |
| LLPS-Pof-0018 | Poecilia formosa | 61.76 | 5e-88 | 272 |
| LLPS-Leo-1902 | Lepisosteus oculatus | 61.76 | 7e-89 | 274 |
| LLPS-Asf-0754 | Aspergillus flavus | 61.66 | 4e-84 | 261 |
| LLPS-Aso-0679 | Aspergillus oryzae | 61.66 | 4e-84 | 261 |
| LLPS-Mao-0238 | Magnaporthe oryzae | 61.66 | 1e-86 | 268 |
| LLPS-Abg-0809 | Absidia glauca | 61.5 | 2e-88 | 272 |
| LLPS-Dar-0863 | Danio rerio | 61.27 | 4e-88 | 272 |
| LLPS-Orl-1673 | Oryzias latipes | 61.27 | 3e-88 | 272 |
| LLPS-Ved-0282 | Verticillium dahliae | 61.14 | 5e-84 | 261 |
| LLPS-Crn-0338 | Cryptococcus neoformans | 60.89 | 1e-86 | 268 |
| LLPS-Pes-0448 | Pelodiscus sinensis | 60.78 | 1e-87 | 271 |
| LLPS-Scm-1558 | Scophthalmus maximus | 60.78 | 1e-87 | 271 |
| LLPS-Scj-0111 | Schizosaccharomyces japonicus | 60.61 | 1e-86 | 267 |
| LLPS-Cea-1090 | Cercocebus atys | 60.51 | 1e-85 | 264 |
| LLPS-Cym-0258 | Cyanidioschyzon merolae | 60.5 | 1e-87 | 270 |
| LLPS-Gaa-1129 | Gasterosteus aculeatus | 60.29 | 5e-87 | 269 |
| LLPS-Orc-2704 | Oryctolagus cuniculus | 60.1 | 1e-84 | 263 |
| LLPS-Scp-1000 | Schizosaccharomyces pombe | 60.1 | 6e-82 | 256 |
| LLPS-Dos-1031 | Dothistroma septosporum | 59.59 | 4e-82 | 257 |
| LLPS-Phn-0053 | Phaeosphaeria nodorum | 59.51 | 3e-85 | 265 |
| LLPS-Pytr-1009 | Pyrenophora triticirepentis | 59.51 | 9e-85 | 263 |
| LLPS-Lem-0981 | Leptosphaeria maculans | 59.51 | 9e-85 | 263 |
| LLPS-Pyt-0526 | Pyrenophora teres | 59.51 | 9e-85 | 263 |
| LLPS-Put-0263 | Puccinia triticina | 59.5 | 3e-84 | 262 |
| LLPS-Pug-0833 | Puccinia graminis | 59.5 | 1e-84 | 263 |
| LLPS-Fuo-0693 | Fusarium oxysporum | 59.02 | 8e-85 | 263 |
| LLPS-Fuv-0062 | Fusarium verticillioides | 59.02 | 9e-85 | 263 |
| LLPS-Yal-0379 | Yarrowia lipolytica | 58.55 | 2e-79 | 249 |
| LLPS-Tar-1164 | Takifugu rubripes | 57.69 | 1e-87 | 271 |
| LLPS-Asfu-0284 | Aspergillus fumigatus | 57.68 | 8e-88 | 271 |
| LLPS-Mel-0453 | Melampsora laricipopulina | 57.43 | 4e-80 | 251 |
| LLPS-Asc-0525 | Aspergillus clavatus | 57.26 | 2e-86 | 268 |
| LLPS-Tum-0490 | Tuber melanosporum | 57.21 | 4e-81 | 253 |
| LLPS-Sac-1542 | Saccharomyces cerevisiae | 56.99 | 2e-76 | 240 |
| LLPS-Nef-0236 | Neosartorya fischeri | 56.85 | 6e-87 | 269 |
| LLPS-Caj-0642 | Callithrix jacchus | 56.83 | 3e-88 | 272 |
| LLPS-Cas-1226 | Carlito syrichta | 56.71 | 2e-89 | 275 |
| LLPS-Caf-0020 | Canis familiaris | 56.71 | 5e-89 | 275 |
| LLPS-Poa-0542 | Pongo abelii | 56.71 | 2e-87 | 273 |
| LLPS-Rhb-0414 | Rhinopithecus bieti | 56.71 | 2e-89 | 275 |
| LLPS-Man-0567 | Macaca nemestrina | 56.71 | 2e-89 | 275 |
| LLPS-Urm-1182 | Ursus maritimus | 56.71 | 1e-88 | 274 |
| LLPS-Pap-0491 | Pan paniscus | 56.71 | 3e-89 | 275 |
| LLPS-Mod-0632 | Monodelphis domestica | 56.71 | 2e-89 | 275 |
| LLPS-Fec-1210 | Felis catus | 56.71 | 2e-89 | 275 |
| LLPS-Mup-0026 | Mustela putorius furo | 56.71 | 2e-88 | 272 |
| LLPS-Dio-1863 | Dipodomys ordii | 56.71 | 2e-89 | 275 |
| LLPS-Gog-1379 | Gorilla gorilla | 56.71 | 3e-89 | 275 |
| LLPS-Sah-0296 | Sarcophilus harrisii | 56.71 | 2e-89 | 275 |
| LLPS-Sus-0078 | Sus scrofa | 56.71 | 2e-89 | 275 |
| LLPS-Maf-0173 | Macaca fascicularis | 56.71 | 2e-89 | 275 |
| LLPS-Spr-0234 | Sporisorium reilianum | 56.5 | 1e-79 | 249 |
| LLPS-Orn-1302 | Oreochromis niloticus | 56.49 | 2e-88 | 273 |
| LLPS-Tag-1162 | Taeniopygia guttata | 56.36 | 9e-90 | 276 |
| LLPS-Gaga-0283 | Gallus gallus | 56.36 | 1e-89 | 276 |
| LLPS-Fia-1862 | Ficedula albicollis | 56.36 | 5e-89 | 276 |
| LLPS-Anp-0026 | Anas platyrhynchos | 56.36 | 1e-89 | 276 |
| LLPS-Meg-2214 | Meleagris gallopavo | 56.36 | 1e-89 | 276 |
| LLPS-Ict-0155 | Ictidomys tridecemlineatus | 56.28 | 1e-88 | 273 |
| LLPS-Kop-1096 | Komagataella pastoris | 56.22 | 3e-78 | 245 |
| LLPS-Scc-0177 | Schizosaccharomyces cryophilus | 56.06 | 5e-79 | 248 |
| LLPS-Lac-2785 | Latimeria chalumnae | 56.02 | 2e-88 | 273 |
| LLPS-Usm-0907 | Ustilago maydis | 56.0 | 1e-78 | 246 |
| LLPS-Mam-1740 | Macaca mulatta | 55.74 | 7e-87 | 269 |
| LLPS-Hos-0877 | Homo sapiens | 55.51 | 1e-86 | 268 |
| LLPS-Paa-0593 | Papio anubis | 55.51 | 1e-86 | 268 |
| LLPS-Myl-0045 | Myotis lucifugus | 55.51 | 2e-88 | 273 |
| LLPS-Aim-0462 | Ailuropoda melanoleuca | 55.51 | 9e-87 | 268 |
| LLPS-Asg-0800 | Ashbya gossypii | 55.44 | 6e-75 | 236 |
| LLPS-Anc-0191 | Anolis carolinensis | 55.37 | 5e-89 | 274 |
| LLPS-Cap-1347 | Cavia porcellus | 55.28 | 8e-90 | 276 |
| LLPS-Loa-0771 | Loxodonta africana | 55.28 | 8e-90 | 276 |
| LLPS-Tut-0895 | Tursiops truncatus | 55.28 | 8e-90 | 276 |
| LLPS-Fud-0804 | Fukomys damarensis | 55.28 | 8e-90 | 276 |
| LLPS-Mea-1022 | Mesocricetus auratus | 55.28 | 9e-90 | 276 |
| LLPS-Mum-0587 | Mus musculus | 55.28 | 9e-90 | 276 |
| LLPS-Eqc-0051 | Equus caballus | 54.55 | 2e-85 | 265 |
| LLPS-Mal-1672 | Mandrillus leucophaeus | 54.55 | 1e-81 | 255 |
| LLPS-Ran-3187 | Rattus norvegicus | 54.37 | 9e-90 | 276 |
| LLPS-Pat-3126 | Pan troglodytes | 54.11 | 1e-85 | 265 |
| LLPS-Aon-3258 | Aotus nancymaae | 53.88 | 1e-80 | 252 |
| LLPS-Nol-0696 | Nomascus leucogenys | 53.71 | 5e-82 | 256 |
| LLPS-Chs-0280 | Chlorocebus sabaeus | 53.25 | 2e-81 | 255 |
| LLPS-Zyt-0483 | Zymoseptoria tritici | 52.92 | 2e-83 | 260 |
| LLPS-Cog-0273 | Colletotrichum gloeosporioides | 51.3 | 9e-56 | 187 |
| LLPS-Bot-0357 | Bos taurus | 51.13 | 6e-85 | 264 |
| LLPS-Cae-0117 | Caenorhabditis elegans | 50.72 | 2e-70 | 225 |
| LLPS-Otg-0842 | Otolemur garnettii | 49.34 | 1e-72 | 232 |
| LLPS-Ere-0044 | Erinaceus europaeus | 46.0 | 5e-17 | 81.3 |
| LLPS-Ora-0851 | Ornithorhynchus anatinus | 41.38 | 3e-10 | 60.8 |
| LLPS-Gas-0180 | Galdieria sulphuraria | 26.94 | 3e-09 | 60.8 |