LLPS-Art-3122
HDG6
▼ OVERVIEW
| Status: | Reviewed |
| Protein Name: | Homeobox-leucine zipper protein HDG6; HD-ZIP protein HDG6; Homeobox protein FWA; Homeodomain GLABRA 2-like protein 6; Homeodomain transcription factor HDG6; Protein HOMEODOMAIN GLABROUS 6 |
| Gene Name: | HDG6, FWA, HDGL2-6, At4g25530, M7J2.100 |
| Ensembl Gene: | AT4G25530 |
| Ensembl Protein: | AT4G25530.1 |
| Organism: | Arabidopsis thaliana |
| Taxa ID: | 3702 |
| LLPS Type: | Client |
▼ Classification
Condensates:
| Condensate | Description | Tissue/Cell | PMIDs |
|---|---|---|---|
| Nucleolus | "...We identified 1602 proteins in the nucleolar and 2544 proteins in the nuclear fraction with an overlap of 1429 proteins." | Arabidopsis thaliana cells | 26980300 |
▼ FUNCTION
| Probable transcription factor involved in the regulation of time of flowering through the photoperiod flowering pathway. May repress FT. |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | AT4G25530.1 | AT4G25530.1 |
| UniProt | Q9FVI6, FWA_ARATH, O65608, Q9M0K7 | |
| GeneBank | AF243535, AL022197, CP002687, AL161563, AF178688 | AEE85074.1, AAG09302.1, AAK28350.1, CAA18173.1, CAB81363.1 |
| RefSeq | NM_118685.3 | NP_567722.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MNGQGDLDAV GNIPKPGEAE GDEIDMINDM SGVNDQDGGR MRRTHRRTAY QTQELENFYM 60 61 ENPHPTEEQR YELGQRLNMG VNQVKNWFQN KRNLEKINND HLENVTLREE HDRLLATQDQ 120 121 LRSAMLRSLC NICGKATNCG DTEYEVQKLM AENANLEREI DQFNSRYLSH PKQRMVSTSE 180 181 QAPSSSSNPG INATPVLDFS GGTRTSEKET SIFLNLAITA LRELITLGEV DCPFWMIDPI 240 241 VRSKGVSKIY EKYRSSFNNV TKPPGQIVEA SRAKGLVPMT CVTLVKTLMD TGKWVNVFAP 300 301 IVPVASTHKV LSTGSGGTKS GSLQQIQAEF QVISPLVPKR KVTFIRYCKE IRQGLWVVVD 360 361 VTPTQNPTLL PYGCSKRLPS GLIIDDLSNG YSQVTWIEQA EYNESHIHQL YQPLIGYGIG 420 421 LGAKRWLATL QRHCESLSTL SSTNLTEISP GLSAKGATEI VKLAQRMTLN YYRGITSPSV 480 481 DKWQKIQVEN VAQNMSFMIR KNVNEPGELT GIVLSASTSV WLPVNQHTLF AFISHLSFRH 540 541 EWDILTNDTT MEETIRIQKA KRHGNIISLL KIVNNGMLVL QEIWNDASGA MVVYAPVETN 600 601 SIELVKRGEN SDSVKFLPSG FSIVPDGVNG SYHRGNTGGG CLLTFGLQIL VGINPTAALI 660 661 QGTVKSVETL MAHTIVKIKS ALDLQT 686 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGAATGGAC AAGGTGATTT GGATGCGGTT GGAAACATTC CAAAACCAGG TGAAGCTGAA 60 61 GGCGATGAGA TTGATATGAT TAATGATATG TCTGGTGTTA ATGATCAAGA TGGTGGAAGG 120 121 ATGAGAAGAA CCCATAGGCG CACTGCTTAT CAAACTCAAG AACTTGAAAA TTTCTACATG 180 181 GAAAATCCTC ATCCCACTGA AGAACAGAGG TACGAGCTTG GACAAAGGCT TAATATGGGT 240 241 GTCAATCAAG TCAAGAATTG GTTCCAGAAT AAAAGAAATC TCGAGAAGAT CAATAATGAC 300 301 CACCTTGAGA ATGTAACTCT TAGAGAAGAG CATGACAGAT TGCTAGCAAC TCAGGATCAG 360 361 CTTAGAAGCG CAATGCTACG TAGTTTATGC AACATTTGTG GTAAGGCAAC TAATTGTGGA 420 421 GACACTGAAT ATGAGGTGCA AAAACTTATG GCTGAGAATG CTAACTTGGA GCGGGAGATA 480 481 GACCAGTTCA ATTCCAGATA CCTTTCTCAT CCCAAACAAA GGATGGTCAG TACATCCGAA 540 541 CAGGCGCCTT CTTCTTCCTC TAATCCAGGA ATAAATGCAA CACCAGTACT TGATTTTAGT 600 601 GGTGGAACTA GGACGTCTGA GAAGGAGACA TCAATTTTTC TGAATCTTGC CATTACGGCT 660 661 TTGAGAGAGT TGATTACATT GGGAGAAGTG GACTGTCCAT TTTGGATGAT AGATCCAATC 720 721 GTTAGATCCA AAGGAGTATC AAAGATCTAT GAGAAGTATA GAAGTTCTTT CAACAATGTC 780 781 ACAAAACCTC CCGGGCAAAT TGTGGAGGCT TCAAGAGCTA AAGGTTTAGT TCCCATGACT 840 841 TGCGTGACTC TGGTCAAGAC TCTTATGGAC ACAGGCAAAT GGGTCAACGT GTTTGCACCT 900 901 ATAGTCCCTG TGGCATCAAC CCATAAAGTG CTATCTACCG GTTCTGGTGG AACCAAAAGT 960 961 GGCTCACTCC AACAGATTCA AGCAGAATTT CAAGTAATTT CTCCGCTGGT ACCAAAGAGA 1020 1021 AAAGTAACGT TTATTAGATA CTGCAAAGAG ATCAGACAGG GCTTATGGGT GGTCGTCGAC 1080 1081 GTTACTCCTA CTCAAAATCC GACTTTGCTG CCCTATGGTT GTTCTAAGAG GCTACCCTCA 1140 1141 GGCCTTATCA TAGACGACCT GTCCAATGGG TACTCCCAGG TTACATGGAT TGAACAAGCG 1200 1201 GAATATAATG AGAGTCACAT CCACCAACTC TACCAGCCTT TGATTGGCTA TGGGATCGGG 1260 1261 CTAGGTGCAA AGAGATGGCT CGCGACGCTG CAGAGACACT GCGAAAGCCT CTCGACCCTT 1320 1321 TCATCTACCA ACTTGACTGA AATTAGTCCA GGATTGTCTG CAAAAGGTGC AACTGAAATA 1380 1381 GTGAAGCTAG CACAGCGAAT GACTCTCAAC TACTACAGAG GTATTACGAG TCCTTCGGTG 1440 1441 GACAAGTGGC AGAAAATTCA GGTGGAGAAT GTGGCACAAA ACATGAGTTT CATGATCCGA 1500 1501 AAGAACGTGA ATGAGCCTGG TGAGCTAACT GGGATTGTGC TGAGTGCATC CACTTCTGTT 1560 1561 TGGCTCCCAG TGAACCAGCA TACACTCTTT GCTTTCATTA GCCACCTGAG TTTCAGACAC 1620 1621 GAGTGGGATA TCTTGACCAA TGATACTACC ATGGAAGAAA CAATCCGGAT TCAAAAAGCA 1680 1681 AAACGCCATG GAAACATCAT CTCTCTTCTG AAAATCGTTA ATAATGGTAT GCTGGTTCTG 1740 1741 CAAGAGATTT GGAATGATGC ATCAGGTGCA ATGGTGGTGT ATGCACCAGT GGAAACCAAT 1800 1801 TCTATTGAGC TGGTCAAGAG AGGTGAAAAT TCAGATTCTG TGAAGTTTCT TCCTTCGGGA 1860 1861 TTTTCGATAG TGCCAGATGG AGTAAATGGG TCATATCATA GAGGCAATAC TGGTGGAGGA 1920 1921 TGTCTACTGA CATTTGGACT TCAGATCTTG GTGGGCATCA ATCCAACTGC TGCACTCATT 1980 1981 CAAGGTACTG TCAAAAGTGT CGAGACACTC ATGGCTCATA CTATTGTCAA GATCAAATCC 2040 2041 GCGTTAGATT TACAGACGTA A 2061 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Nucleus | |
Molecular Function | DNA binding | |
Molecular Function | DNA-binding transcription factor activity | |
Molecular Function | Lipid binding | |
Molecular Function | Protein homodimerization activity | |
Biological Process | Gene silencing by RNA | |
Biological Process | Multicellular organism development | |
Biological Process | Positive regulation of flower development | |
Biological Process | Regulation of gene expression by genetic imprinting |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Poa-0483 | Pongo abelii | 43.1 | 7e-06 | 50.8 |
| LLPS-Pes-1859 | Pelodiscus sinensis | 43.1 | 6e-06 | 50.8 |
| LLPS-Fia-1599 | Ficedula albicollis | 43.1 | 8e-06 | 51.6 |
| LLPS-Meg-2757 | Meleagris gallopavo | 43.1 | 4e-06 | 51.6 |
| LLPS-Anp-0343 | Anas platyrhynchos | 43.1 | 4e-06 | 51.6 |