LLPS-Art-3019
UBP1A

▼ OVERVIEW

Status: Unreviewed
Protein Name: Oligouridylate-binding protein 1A
Gene Name: UBP1A, At1g54080, F15I1.16
Ensembl Gene: AT1G54080
Ensembl Protein: AT1G54080.2
Organism: Arabidopsis thaliana
Taxa ID: 3702
LLPS Type: Client


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateEvidenceOrthologs
OthersPredicted from orthologs(View)

▼ FUNCTION

Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of the pre-mRNA processing machinery. Functions to facilitate the nuclear maturation of plant pre-mRNAs (By similarity).

▼ SEQUENCE

Protein Sequence (FASTA)
1     MQNQRLIKQQ  QQQQQQQHQQ  AMIQQAMMQQ  HPSLYHPGVM  APPQMEPLPS  GNLPPGFDPT  60
61    TCRSVYAGNI  HTQVTEILLQ  EIFASTGPIE  SCKLIRKDKS  SYGFVHYFDR  RCASMAIMTL  120
121   NGRHIFGQPM  KVNWAYATGQ  REDTSSHFNI  FVGDLSPEVT  DAALFDSFSA  FNSCSSYYRD  180
181   ARVMWDQKTG  RSRGFGFVSF  RNQQDAQTAI  NEMNGKWVSS  RQIRCNWATK  GATFGEDKHS  240
241   SDGKSVVELT  NGSSEDGREL  SNEDAPENNP  QFTTVYVGNL  SPEVTQLDLH  RLFYTLGAGV  300
301   IEEVRVQRDK  GFGFVRYNTH  DEAALAIQMG  NAQPFLFSRQ  IRCSWGNKPT  PSGTASNPLP  360
361   PPAPASVPSL  SAMDLLAYER  QLALAKMHPQ  AQHSLRQAGL  GVNVAGGTAA  MYDGGYQNVA  420
421   AAHQQLMYYQ  430
Nucleotide CDS Sequence (FASTA)
1     ATGCAGAATC  AAAGGCTTAT  TAAGCAGCAA  CAACAACAAC  AACAACAGCA  ACATCAACAA  60
61    GCTATGATTC  AACAAGCTAT  GATGCAACAA  CATCCTTCTC  TTTATCATCC  TGGTGTTATG  120
121   GCTCCTCCTC  AGATGGAGCC  TTTACCAAGT  GGAAACCTTC  CTCCTGGTTT  TGATCCAACT  180
181   ACTTGCCGTA  GTGTGTATGC  TGGAAACATT  CATACGCAGG  TCACAGAGAT  TCTTCTTCAA  240
241   GAGATTTTTG  CAAGTACTGG  TCCTATTGAA  AGCTGTAAAC  TCATCAGAAA  GGATAAGTCA  300
301   TCATATGGAT  TTGTTCACTA  CTTTGATCGA  AGATGTGCTA  GTATGGCTAT  AATGACTCTT  360
361   AACGGAAGGC  ATATATTTGG  ACAGCCTATG  AAAGTTAATT  GGGCGTATGC  AACTGGTCAA  420
421   AGGGAAGATA  CATCAAGTCA  TTTCAACATT  TTTGTTGGAG  ATCTTAGTCC  AGAGGTTACT  480
481   GATGCAGCAT  TGTTTGATAG  CTTTTCTGCT  TTTAACAGCT  GCTCGGACGC  AAGAGTAATG  540
541   TGGGACCAGA  AAACTGGACG  CTCAAGAGGC  TTTGGTTTTG  TTTCCTTCCG  TAATCAGCAG  600
601   GATGCTCAAA  CTGCCATAAA  TGAGATGAAT  GGTAAATGGG  TAAGTAGCAG  ACAGATCAGA  660
661   TGCAACTGGG  CGACAAAAGG  TGCTACTTTT  GGCGAGGACA  AACATAGCTC  TGATGGAAAA  720
721   AGTGTTGTAG  AACTTACTAA  CGGATCTTCA  GAGGATGGTA  GAGAGCTGTC  AAATGAAGAT  780
781   GCCCCTGAAA  ACAATCCTCA  ATTTACAACT  GTCTATGTAG  GAAATCTCTC  TCCAGAAGTA  840
841   ACTCAGCTTG  ATCTACACCG  TCTATTCTAT  ACCCTTGGTG  CTGGAGTGAT  CGAAGAGGTC  900
901   CGTGTCCAGC  GAGACAAAGG  GTTTGGTTTT  GTGAGATATA  ACACTCATGA  CGAGGCTGCT  960
961   CTTGCTATTC  AGATGGGCAA  CGCTCAGCCT  TTCCTCTTTA  GCAGACAGAT  AAGGTGTTCC  1020
1021  TGGGGAAACA  AACCAACTCC  ATCAGGCACA  GCCTCAAACC  CACTTCCCCC  ACCAGCCCCG  1080
1081  GCATCAGTCC  CTTCTCTGTC  TGCAATGGAC  CTCTTAGCCT  ACGAGAGGCA  ACTGGCTCTA  1140
1141  GCCAAGATGC  ATCCTCAGGC  TCAACATTCT  CTGAGGCAAG  CAGGTCTTGG  AGTCAATGTT  1200
1201  GCTGGAGGAA  CTGCAGCTAT  GTATGATGGT  GGCTATCAGA  ATGTAGCTGC  GGCCCATCAG  1260
1261  CAGCTCATGT  ACTATCAGTA  A  1281

▼ KEYWORD

ID
Family
Alternative splicing
Complete proteome
mRNA processing
Nucleus
Phosphoprotein
Reference proteome
Repeat
RNA-binding

▼ GENE ONTOLOGY

ID
Classification
Description
Cellular Component
Nucleus
Molecular Function
MRNA binding
Biological Process
MRNA processing

▼ KEGG


▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Arl-1898Arabidopsis lyrata94.990.0 759
LLPS-Brn-1332Brassica napus88.770.0 662
LLPS-Brr-1661Brassica rapa86.850.0 688
LLPS-Bro-1248Brassica oleracea86.350.0 685
LLPS-Thc-1165Theobroma cacao76.490.0 619
LLPS-Viv-2472Vitis vinifera76.430.0 613
LLPS-Mae-0016Manihot esculenta76.110.0 616
LLPS-Gor-0394Gossypium raimondii76.050.0 614
LLPS-Prp-1347Prunus persica75.980.0 622
LLPS-Via-1377Vigna angularis75.620.0 615
LLPS-Glm-1992Glycine max75.560.0 610
LLPS-Hea-2125Helianthus annuus75.370.0 620
LLPS-Nia-2344Nicotiana attenuata75.210.0 533
LLPS-Phv-1677Phaseolus vulgaris74.810.0 610
LLPS-Met-0216Medicago truncatula74.630.0 610
LLPS-Pot-0847Populus trichocarpa74.440.0 607
LLPS-Cus-2045Cucumis sativus74.190.0 615
LLPS-Sot-0475Solanum tuberosum73.50.0 598
LLPS-Sol-1413Solanum lycopersicum73.50.0 598
LLPS-Coc-0607Corchorus capsularis71.040.0 559
LLPS-Dac-0364Daucus carota70.170.0 563
LLPS-Mua-0927Musa acuminata69.150.0 548
LLPS-Lep-0338Leersia perrieri68.722e-176 508
LLPS-Orr-0239Oryza rufipogon68.222e-172 498
LLPS-Org-0737Oryza glaberrima68.222e-172 498
LLPS-Ors-0863Oryza sativa68.222e-172 498
LLPS-Orgl-0699Oryza glumaepatula68.222e-172 498
LLPS-Orb-0909Oryza barthii68.222e-172 498
LLPS-Ori-1240Oryza indica68.222e-172 498
LLPS-Orni-1000Oryza nivara68.222e-172 498
LLPS-Orm-0030Oryza meridionalis68.212e-175 506
LLPS-Hov-1532Hordeum vulgare68.110.0 520
LLPS-Orbr-1278Oryza brachyantha67.962e-171 495
LLPS-Amt-1353Amborella trichopoda67.660.0 538
LLPS-Tru-0281Triticum urartu67.351e-177 509
LLPS-Tra-1221Triticum aestivum67.240.0 526
LLPS-Brd-0583Brachypodium distachyon66.420.0 529
LLPS-Orp-0653Oryza punctata66.249e-179 513
LLPS-Sei-1018Setaria italica66.122e-125 373
LLPS-Zem-1325Zea mays66.015e-180 517
LLPS-Sob-0141Sorghum bicolor65.735e-171 494
LLPS-Vir-0569Vigna radiata65.243e-176 506
LLPS-Php-1785Physcomitrella patens60.371e-127 382
LLPS-Sem-0919Selaginella moellendorffii59.688e-144 424
LLPS-Pug-0143Puccinia graminis44.072e-71 239
LLPS-Zyt-0750Zymoseptoria tritici43.697e-68 228
LLPS-Dos-0345Dothistroma septosporum43.592e-65 224
LLPS-Put-0516Puccinia triticina43.331e-69 234
LLPS-Nef-0476Neosartorya fischeri43.323e-67 228
LLPS-Crn-0178Cryptococcus neoformans43.277e-68 229
LLPS-Miv-0837Microbotryum violaceum43.151e-64 221
LLPS-Asc-0051Aspergillus clavatus42.865e-65 222
LLPS-Tum-0874Tuber melanosporum42.813e-66 226
LLPS-Scs-0736Sclerotinia sclerotiorum42.765e-66 226
LLPS-Gag-0271Gaeumannomyces graminis42.768e-61 211
LLPS-Map-0047Magnaporthe poae42.768e-61 211
LLPS-Ast-0217Aspergillus terreus42.485e-64 219
LLPS-Mel-0516Melampsora laricipopulina42.34e-66 225
LLPS-Abg-0353Absidia glauca42.235e-69 229
LLPS-Asn-0266Aspergillus nidulans41.831e-63 218
LLPS-Aso-0257Aspergillus oryzae41.692e-63 218
LLPS-Asf-0643Aspergillus flavus41.692e-63 218
LLPS-Mao-1001Magnaporthe oryzae41.616e-61 211
LLPS-Pyt-0650Pyrenophora teres41.43e-63 218
LLPS-Blg-0267Blumeria graminis41.071e-64 222
LLPS-Asfu-1202Aspergillus fumigatus40.848e-58 203
LLPS-Scm-0701Scophthalmus maximus40.753e-60 207
LLPS-Trv-0105Trichoderma virens40.631e-64 221
LLPS-Fuo-0644Fusarium oxysporum40.638e-65 221
LLPS-Fuv-0318Fusarium verticillioides40.633e-65 221
LLPS-Nec-1122Neurospora crassa40.511e-64 221
LLPS-Cogr-0174Colletotrichum graminicola40.325e-64 219
LLPS-Fus-0498Fusarium solani40.323e-64 220
LLPS-Cog-0774Colletotrichum gloeosporioides40.323e-64 220
LLPS-Gaa-2665Gasterosteus aculeatus40.072e-54 190
LLPS-Orl-0027Oryzias latipes40.078e-60 206
LLPS-Ved-0557Verticillium dahliae40.04e-55 196
LLPS-Trr-0586Trichoderma reesei40.03e-63 218
LLPS-Asm-0350Astyanax mexicanus40.07e-57 198
LLPS-Coo-0139Colletotrichum orbiculare40.02e-63 218
LLPS-Orn-0416Oreochromis niloticus39.931e-57 200
LLPS-Tar-3443Takifugu rubripes39.862e-57 199
LLPS-Beb-1010Beauveria bassiana39.689e-63 215
LLPS-Pof-0296Poecilia formosa39.665e-57 198
LLPS-Xim-2135Xiphophorus maculatus39.662e-57 199
LLPS-Dar-0236Danio rerio39.525e-59 204
LLPS-Pes-1349Pelodiscus sinensis39.385e-57 198
LLPS-Pytr-0819Pyrenophora triticirepentis39.221e-56 200
LLPS-Myl-0852Myotis lucifugus39.133e-55 193
LLPS-Gaga-0001Gallus gallus39.042e-58 202
LLPS-Fia-1636Ficedula albicollis39.044e-55 193
LLPS-Leo-0760Lepisosteus oculatus39.043e-56 196
LLPS-Urm-1173Ursus maritimus38.983e-56 196
LLPS-Pat-0434Pan troglodytes38.983e-56 196
LLPS-Ova-1218Ovis aries38.983e-56 196
LLPS-Mup-1887Mustela putorius furo38.983e-56 196
LLPS-Chs-0001Chlorocebus sabaeus38.983e-56 196
LLPS-Caj-0338Callithrix jacchus38.983e-56 196
LLPS-Lac-1201Latimeria chalumnae38.832e-55 194
LLPS-Bot-2321Bos taurus38.82e-55 195
LLPS-Ten-2282Tetraodon nigroviridis38.679e-57 198
LLPS-Scf-2189Scleropages formosus38.491e-57 200
LLPS-Orc-0844Oryctolagus cuniculus38.366e-55 192
LLPS-Anp-0963Anas platyrhynchos38.211e-52 187
LLPS-Meg-0318Meleagris gallopavo38.216e-55 193
LLPS-Phn-1074Phaeosphaeria nodorum38.06e-64 220
LLPS-Cas-0159Carlito syrichta38.02e-53 189
LLPS-Ict-0494Ictidomys tridecemlineatus37.831e-54 192
LLPS-Eqc-1057Equus caballus37.753e-53 189
LLPS-Ran-0013Rattus norvegicus37.723e-54 191
LLPS-Icp-0663Ictalurus punctatus37.724e-55 193
LLPS-Pap-2072Pan paniscus37.71e-53 190
LLPS-Paa-0714Papio anubis37.79e-54 190
LLPS-Mam-1809Macaca mulatta37.672e-53 189
LLPS-Caf-0859Canis familiaris37.678e-54 190
LLPS-Poa-0183Pongo abelii37.671e-52 187
LLPS-Man-0277Macaca nemestrina37.673e-53 189
LLPS-Loa-0445Loxodonta africana37.676e-54 190
LLPS-Hos-0303Homo sapiens37.673e-53 188
LLPS-Fec-0262Felis catus37.675e-54 191
LLPS-Mal-2146Mandrillus leucophaeus37.673e-53 189
LLPS-Aon-0935Aotus nancymaae37.673e-53 189
LLPS-Cea-0431Cercocebus atys37.673e-53 189
LLPS-Sus-0370Sus scrofa37.675e-54 191
LLPS-Maf-0268Macaca fascicularis37.672e-53 189
LLPS-Mum-1259Mus musculus37.51e-53 190
LLPS-Mod-1651Monodelphis domestica37.332e-53 189
LLPS-Tut-0360Tursiops truncatus37.335e-53 188
LLPS-Xet-0771Xenopus tropicalis36.892e-54 192
LLPS-Rhb-0325Rhinopithecus bieti36.862e-53 189
LLPS-Otg-1087Otolemur garnettii36.862e-53 189
LLPS-Dio-0181Dipodomys ordii35.968e-53 188