DrLLPS - Data resource of LLPS

LLPS-Art-2489
SWI3A

▼ OVERVIEW


Status:	Unreviewed
Protein Name:	SWI/SNF complex subunit SWI3A
Gene Name:	SWI3A, CHB1, At2g47620, T30B22.7
Ensembl Gene:	AT2G47620
Ensembl Protein:	AT2G47620.2
Organism:	Arabidopsis thaliana
Taxa ID:	3702
LLPS Type:	Others

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Evidence	Orthologs
Others	Predicted from orthologs	(View)

Organism	DrLLPS ID	UniProt ID	LLPS type	Condensate	Identity	E-value	Score
Saccharomyces cerevisiae	LLPS-Sac-0249	P43609	Client	Others	32.75	3e-32	134

▼ FUNCTION

Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	AT2G47620.2	AT2G47620.2
Ensembl	AT2G47620.1	AT2G47620.1
UniProt		Q8W475, SWI3A_ARATH, Q8S8T3
GeneBank	AC002535, AY081570, CP002685, AY062794	AAL32872.1, AAM14849.1, AAM10132.1, AEC10865.1
RefSeq	NM_180145.3	NP_850476.1

▼ SEQUENCE

Protein Sequence (FASTA)
1 MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN 60 61 KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN FSSSLKKNDH LLSVDNAKIE 120 121 QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC 180 181 GERCDSPFYQ HNKGIVNICE KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV 240 241 LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD 300 301 GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK 360 361 AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE QQEEKDGPQG LPVALRIRAS 420 421 VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE 480 481 GVKETIIQER VSVLQCAFRS GITKRWDHTY VK 512
Nucleotide CDS Sequence (FASTA)
1 ATGGAAGCCA CTGATCCAAG CGCAGAGATC GAGCTCTACA CCATTCCTGC TCAATCCAGT 60 61 TGGTTCTTAT GGGATGATAT ACACGAAATT GAAAGACGCG AGTTTGCGGA GTTCTTCACT 120 121 GAGAGCTCAA TCACTAGAAC CCCCAAAGTT TACAAGGAGT ACCGAGATTT CATTATCAAT 180 181 AAGTTTAGAG AGGACACTTG TCGGAGACTC ACCTTCACCA GTGTCCGCAA GTTTCTTGTT 240 241 GGCGATGTCA ATTTGCTCCA GAAAGTTTTT CTCTTCCTCG AAAAATGGGG ATTGATCAAT 300 301 TTTAGCTCTT CCCTGAAGAA AAATGACCAT CTATTGTCCG TGGATAATGC TAAAATAGAA 360 361 CAAGGGACTC CTGCTGGAAT TCGAGTTACT GCAACCCCTA ATTCTCTTAG GCCTATAACC 420 421 GCACCGCCCC TTGTTGAGGA AAGAGTTGAG ACTGGCATCA AAGTACCACC GCTTACCTCT 480 481 TATTCAGATG TTTTCAGTGA TTTGAAGAAG CCGGATCATG TATTGGTTTG TGCGCATTGT 540 541 GGAGAACGTT GCGATTCTCC TTTCTATCAA CATAACAAGG GTATAGTCAA CATATGCGAA 600 601 AAGTGTTTCA AGAATGGAAA CTATGGGGAG AACAACACTG CAGATGATTT TAAGTTGATT 660 661 GGGAATTCAG CTGCAGCTGT GTGGACAGAG GAAGAGATCC TCCTCTTGCT AGAATCTGTG 720 721 CTGAAACATG GAGATGATTG GGAACTCATT TCACAAAGTG TTTCTACCAA GAGTAGACTA 780 781 GATTGCATTT CTAAACTCAT TGAGCTCCCG TTTGGAGAGT TTCTGATGGG TTCTGCTTCT 840 841 GGAAGACTCA ATCCCTCTAT CCTCACCGAG GATGAAAACA CGGAACAGGT GCAAACTGAT 900 901 GGGCAGGAAC ATGAGGAAAC AGAGACAAGG GAAGAAAAAG AAGATCGCGT GAATGAAGAT 960 961 GAGCCTCCAG CAAAAAGGAA ACGTGTTGCA CTGATATCAG AGGGTGATAG TTCACTTATG 1020 1021 AAACAGGTCG CTGCCATGGC AAGTAAAGTT GGTCCATCTG TCGCAACTGC TGCTGCAAAA 1080 1081 GCTGCACTTG CAGCTCTTTG TGATGAAGCC TCATGTCCAA AAGAGATTTT TGACACTGAT 1140 1141 GACTACAGCA ATTTCACAGT TGATAGGTTC GATTCTCTAA GCCCTCAATT TGCTTGTGGT 1200 1201 TTGGCTTCTC ATGTCCTACA CTAA 1224

▼ KEYWORD

ID	Family
KW-0010	Activator
KW-0156	Chromatin regulator
KW-0175	Coiled coil
KW-0181	Complete proteome
KW-0217	Developmental protein
KW-0238	DNA-binding
KW-0539	Nucleus
KW-1185	Reference proteome
KW-0804	Transcription
KW-0805	Transcription regulation

▼ GENE ONTOLOGY

ID	Classification	Description
GO:0016514	Cellular Component	SWI/SNF complex
GO:0003677	Molecular Function	DNA binding
GO:0006338	Biological Process	Chromatin remodeling
GO:0007275	Biological Process	Multicellular organism development

▼ KEGG

ath:AT2G47620

▼ ANNOTATION

Disorder
IUPred2A

Domain
SMART	Pfam	InterPro	LCR-eXXXplorer	CDD
PROSITE	Gene3D

Interaction
HINT	Mentha	PINA	iRefIndex

Physicochemical
AAindex

Localization
COMPARTMENTS

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Brn-2984	Brassica napus	72.83	0.0	587
LLPS-Hea-0404	Helianthus annuus	53.38	1e-90	298
LLPS-Mae-0701	Manihot esculenta	52.37	3e-142	428
LLPS-Thc-0122	Theobroma cacao	50.63	4e-142	429
LLPS-Met-1578	Medicago truncatula	50.28	5e-132	401
LLPS-Cus-2175	Cucumis sativus	49.45	2e-130	398
LLPS-Viv-2448	Vitis vinifera	49.37	2e-135	410
LLPS-Prp-1292	Prunus persica	49.36	4e-128	392
LLPS-Coc-1752	Corchorus capsularis	48.62	1e-138	419
LLPS-Ved-1098	Verticillium dahliae	48.28	2e-21	102
LLPS-Glm-1108	Glycine max	47.26	8e-126	385
LLPS-Nef-1368	Neosartorya fischeri	47.13	4e-20	98.2
LLPS-Ast-0792	Aspergillus terreus	47.13	9e-20	97.1
LLPS-Asfu-0435	Aspergillus fumigatus	47.13	6e-20	97.4
LLPS-Usm-0419	Ustilago maydis	47.13	2e-20	99.4
LLPS-Spr-0289	Sporisorium reilianum	47.13	2e-20	99.4
LLPS-Asc-0470	Aspergillus clavatus	47.13	6e-20	97.4
LLPS-Ten-2852	Tetraodon nigroviridis	45.98	1e-18	94.0
LLPS-Asf-0195	Aspergillus flavus	45.98	6e-20	97.4
LLPS-Tar-2158	Takifugu rubripes	45.98	1e-18	94.0
LLPS-Aso-0409	Aspergillus oryzae	45.98	1e-19	96.7
LLPS-Dac-2423	Daucus carota	45.37	1e-117	364
LLPS-Xim-0959	Xiphophorus maculatus	44.83	1e-18	94.4
LLPS-Via-1696	Vigna angularis	44.73	2e-119	370
LLPS-Mao-0698	Magnaporthe oryzae	43.68	1e-18	94.0
LLPS-Nia-1212	Nicotiana attenuata	43.12	5e-111	348
LLPS-Sol-1862	Solanum lycopersicum	41.77	1e-105	335
LLPS-Amt-1210	Amborella trichopoda	39.66	3e-76	257
LLPS-Ori-1346	Oryza indica	35.19	6e-35	141
LLPS-Orp-1362	Oryza punctata	34.81	1e-34	140
LLPS-Pot-2654	Populus trichocarpa	34.6	9e-36	143
LLPS-Tru-1388	Triticum urartu	34.07	3e-34	140
LLPS-Gor-1633	Gossypium raimondii	33.94	1e-38	151
LLPS-Php-2093	Physcomitrella patens	33.27	9e-50	186
LLPS-Sac-0249	Saccharomyces cerevisiae	32.75	3e-32	133
LLPS-Sei-1656	Setaria italica	32.58	1e-37	149
LLPS-Tra-2784	Triticum aestivum	32.38	9e-40	155
LLPS-Orm-0018	Oryza meridionalis	32.29	1e-34	140
LLPS-Put-0609	Puccinia triticina	32.25	3e-33	138
LLPS-Yal-0617	Yarrowia lipolytica	32.2	2e-27	120
LLPS-Hov-1252	Hordeum vulgare	32.19	3e-39	154
LLPS-Sob-0182	Sorghum bicolor	32.13	9e-38	149
LLPS-Scc-0741	Schizosaccharomyces cryophilus	32.0	4e-29	124
LLPS-Mua-1305	Musa acuminata	31.92	3e-45	171
LLPS-Chc-0052	Chondrus crispus	31.8	9e-31	131
LLPS-Sem-1410	Selaginella moellendorffii	31.66	2e-41	160
LLPS-Scj-1151	Schizosaccharomyces japonicus	31.07	7e-27	117
LLPS-Crn-1024	Cryptococcus neoformans	30.94	4e-33	137
LLPS-Org-1461	Oryza glaberrima	30.86	4e-35	141
LLPS-Orr-2030	Oryza rufipogon	30.86	5e-35	141
LLPS-Orni-1618	Oryza nivara	30.86	5e-35	141
LLPS-Orgl-1114	Oryza glumaepatula	30.86	4e-35	141
LLPS-Orbr-0005	Oryza brachyantha	30.64	9e-38	149
LLPS-Lep-0882	Leersia perrieri	30.61	2e-32	135
LLPS-Orb-2020	Oryza barthii	30.57	5e-34	138
LLPS-Abg-1454	Absidia glauca	30.4	2e-23	108
LLPS-Vir-0431	Vigna radiata	30.39	2e-35	142
LLPS-Brd-1026	Brachypodium distachyon	30.37	4e-40	156
LLPS-Gas-1182	Galdieria sulphuraria	30.32	7e-28	122
LLPS-Miv-0013	Microbotryum violaceum	30.27	3e-29	125
LLPS-Sot-1492	Solanum tuberosum	30.26	4e-33	135
LLPS-Asm-0222	Astyanax mexicanus	30.22	7e-21	100
LLPS-Dar-0727	Danio rerio	30.11	5e-22	104
LLPS-Pof-0830	Poecilia formosa	29.86	2e-20	99.8
LLPS-Rhb-3281	Rhinopithecus bieti	29.75	2e-19	96.3
LLPS-Hos-0717	Homo sapiens	29.75	2e-19	96.3
LLPS-Urm-1313	Ursus maritimus	29.75	2e-19	96.3
LLPS-Pap-4241	Pan paniscus	29.75	2e-19	96.3
LLPS-Pat-2962	Pan troglodytes	29.75	2e-19	96.3
LLPS-Fec-2956	Felis catus	29.75	2e-19	96.7
LLPS-Man-2932	Macaca nemestrina	29.75	2e-19	96.3
LLPS-Loa-0086	Loxodonta africana	29.75	2e-19	96.7
LLPS-Nol-3439	Nomascus leucogenys	29.75	2e-19	96.7
LLPS-Ict-0470	Ictidomys tridecemlineatus	29.75	2e-19	96.3
LLPS-Caf-1159	Canis familiaris	29.75	2e-19	96.3
LLPS-Cap-2556	Cavia porcellus	29.75	2e-19	96.7
LLPS-Eqc-0455	Equus caballus	29.75	2e-19	96.3
LLPS-Mam-4040	Macaca mulatta	29.75	2e-19	96.3
LLPS-Gog-1649	Gorilla gorilla	29.75	1e-19	96.7
LLPS-Fud-1590	Fukomys damarensis	29.75	1e-19	96.7
LLPS-Caj-0268	Callithrix jacchus	29.75	1e-19	97.1
LLPS-Mum-0200	Mus musculus	29.75	2e-19	96.7
LLPS-Maf-2868	Macaca fascicularis	29.75	2e-19	96.3
LLPS-Mea-3050	Mesocricetus auratus	29.75	4e-19	95.1
LLPS-Chs-1901	Chlorocebus sabaeus	29.75	1e-19	96.7
LLPS-Sus-2505	Sus scrofa	29.75	2e-19	96.3
LLPS-Cea-4701	Cercocebus atys	29.75	2e-19	96.3
LLPS-Aon-0727	Aotus nancymaae	29.75	1e-19	97.1
LLPS-Ran-4721	Rattus norvegicus	29.75	2e-19	96.3
LLPS-Paa-3218	Papio anubis	29.75	2e-19	96.3
LLPS-Mal-0007	Mandrillus leucophaeus	29.75	2e-19	96.3
LLPS-Ova-1332	Ovis aries	29.75	1e-19	97.1
LLPS-Mup-2303	Mustela putorius furo	29.75	1e-19	96.7
LLPS-Aim-1251	Ailuropoda melanoleuca	29.75	2e-19	96.7
LLPS-Dio-2841	Dipodomys ordii	29.75	3e-19	95.9
LLPS-Bot-1396	Bos taurus	29.75	1e-19	97.1
LLPS-Icp-0025	Ictalurus punctatus	29.71	2e-20	99.8
LLPS-Kop-0182	Komagataella pastoris	29.69	2e-29	125
LLPS-Gaa-2380	Gasterosteus aculeatus	29.64	6e-19	94.7
LLPS-Lac-2608	Latimeria chalumnae	29.56	1e-20	99.8
LLPS-Gaga-3616	Gallus gallus	29.45	2e-20	99.4
LLPS-Pug-1198	Puccinia graminis	29.41	2e-30	129
LLPS-Scp-1073	Schizosaccharomyces pombe	29.41	2e-26	115
LLPS-Mod-0081	Monodelphis domestica	29.39	4e-19	95.5
LLPS-Scf-1477	Scleropages formosus	29.35	8e-19	94.4
LLPS-Zem-0448	Zea mays	29.33	3e-35	142
LLPS-Phv-0631	Phaseolus vulgaris	29.13	1e-35	142
LLPS-Mel-0378	Melampsora laricipopulina	29.13	7e-25	112
LLPS-Orc-3815	Oryctolagus cuniculus	29.12	3e-19	95.9
LLPS-Fus-0428	Fusarium solani	29.05	2e-30	129
LLPS-Myl-1231	Myotis lucifugus	29.03	2e-19	96.3
LLPS-Cym-0868	Cyanidioschyzon merolae	28.8	2e-34	142
LLPS-Anc-1181	Anolis carolinensis	28.73	2e-19	96.7
LLPS-Beb-0561	Beauveria bassiana	28.66	1e-30	130
LLPS-Cis-0116	Ciona savignyi	28.52	2e-21	99.4
LLPS-Xet-2417	Xenopus tropicalis	28.47	7e-21	100
LLPS-Fuv-0181	Fusarium verticillioides	28.36	5e-31	130
LLPS-Trr-1166	Trichoderma reesei	28.27	7e-30	127
LLPS-Dos-0497	Dothistroma septosporum	28.08	1e-26	118
LLPS-Cogr-0675	Colletotrichum graminicola	28.06	2e-27	120
LLPS-Pes-1988	Pelodiscus sinensis	28.01	3e-19	95.5
LLPS-Otg-1626	Otolemur garnettii	28.0	1e-19	96.7
LLPS-Sah-2964	Sarcophilus harrisii	28.0	5e-19	95.1
LLPS-Zyt-0018	Zymoseptoria tritici	27.94	5e-27	119
LLPS-Nec-0476	Neurospora crassa	27.88	6e-29	125
LLPS-Drm-1000	Drosophila melanogaster	27.84	1e-20	100
LLPS-Bro-0947	Brassica oleracea	27.78	1e-20	99.8
LLPS-Cii-1813	Ciona intestinalis	27.68	3e-21	101
LLPS-Asn-0228	Aspergillus nidulans	27.53	3e-24	110
LLPS-Gag-0882	Gaeumannomyces graminis	27.39	8e-24	109
LLPS-Arl-1481	Arabidopsis lyrata	27.34	2e-19	96.3
LLPS-Tum-0079	Tuber melanosporum	27.31	6e-20	97.4
LLPS-Cog-0565	Colletotrichum gloeosporioides	27.25	4e-26	116
LLPS-Fuo-0283	Fusarium oxysporum	27.22	6e-29	125
LLPS-Trv-0260	Trichoderma virens	27.19	2e-28	123
LLPS-Ors-2031	Oryza sativa	27.18	1e-18	93.6
LLPS-Coo-1215	Colletotrichum orbiculare	27.16	1e-25	114
LLPS-Brr-1501	Brassica rapa	27.14	2e-33	136
LLPS-Blg-0673	Blumeria graminis	26.4	3e-22	104
LLPS-Phn-0826	Phaeosphaeria nodorum	26.32	5e-21	100
LLPS-Map-0694	Magnaporthe poae	26.11	3e-23	107
LLPS-Pyt-0678	Pyrenophora teres	25.96	3e-22	104
LLPS-Asg-0623	Ashbya gossypii	25.91	7e-21	100

LLPS-Art-2489SWI3A

Protein Sequence

Nucleotide Sequence

LLPS-Art-2489
SWI3A