LLPS-Art-1814
At1g24300
▼ OVERVIEW
| Status: | Reviewed |
| Protein Name: | GYF domain-containing protein |
| Gene Name: | At1g24300, F3I6.24, F3I6_24 |
| Ensembl Gene: | AT1G24300 |
| Ensembl Protein: | AT1G24300.2 |
| Organism: | Arabidopsis thaliana |
| Taxa ID: | 3702 |
| LLPS Type: | Others |
▼ PROPERTY
▼ Classification
Condensates:
| Condensate | Description | Tissue/Cell | PMIDs |
|---|---|---|---|
| Nucleolus | "...We identified 1602 proteins in the nucleolar and 2544 proteins in the nuclear fraction with an overlap of 1429 proteins." | Arabidopsis thaliana cells | 26980300 |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | AT1G24300.2 | AT1G24300.2 |
| Ensembl | AT1G24300.3 | AT1G24300.3 |
| Ensembl | AT1G24300.1 | AT1G24300.1 |
| UniProt | F4I983, F4I983_ARATH | |
| GeneBank | CP002684 | AEE30513.1 |
| RefSeq | NM_102276.7 | NP_173840.4 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MAEGKFDLPD DLILSKSSDQ LKELASDNSI PLSPQWLYTK SSESKMDVRS PTPMPMGNPS 60 61 DPNLKDAWRL DAPEDKKDWK KIVSENETNR RWREEERETG LLGARKVDRR KTERRIDNVS 120 121 SRETGEVKTT AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVEINKDKEE 180 181 PQSESQSVVS NVRATSERDS DPRDKWRPRH RMESQSGVPT SYRTAPGFGL DRGRAEGPNL 240 241 GFTVGRGRAS TIGRGSSTSL IGAGSASAPV FRYPRGKLLD MYRKQKPDPS LGRIPTEMDE 300 301 VASITQVALI EPLAFIAPDT EEEASINGIW KGRIISSEVY TSSGEESLGE NSLLKCRIPE 360 361 SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS SVPRLNSVAS ESYGSFGAGY 420 421 QVSHGSPEAV RSVFTKSPVL DGSESVVGSF EQDYMGKLQQ PDVEVDQSEA AMPPEDFLFL 480 481 YIDPQGVIQG PFIGSDIISW FEQGFFGTDL QVRLANAPEG TPFQDLGRVM SYLKTESAHA 540 541 HISNQESELE ETRLKANSDT GLSIAPVAES NDSSSMNGTS RSFSVYNNPS AQDNFQRKSE 600 601 SEFYATPPHT EDRSFLDFST QDEEIVFPGR AGVSGYASVK SSTSMHDAFM EVSGQSAIPV 660 661 ESTKAATQKQ HENKLHPFGV LWSELESSNV PVNLLPNRSY DAMGEPTGAI DNRPIDSRRN 720 721 TQVDPNMSLD GLASNRMSQF EHLSNRFNLG DQLSSNQHNQ QQFQNRDMLS HSHIGDQAQD 780 781 LDYLITLQLQ QQQKIQLQQQ QKIQLQQQQK IQLQQQQKMQ LQQHQLEQEH QLHQKLLQEQ 840 841 QQSHARQLHY QQILQGQTPD SRFGQSHDFP RSNNVDQMLL EHQLMNELQK SSGHPSQNFA 900 901 PYIEQLAAGN FGQLPHEGHQ RELLEQLLST KMQSQYGPMQ SPYGQLQSEP TRSLEYQLLQ 960 961 QEQLMQLANG VRHNTLLEEQ RHIDPLWPSD HNDQLLRSHP GIQRSRSSTG FRQLDFHQQQ 1020 1021 QRPPFEDQFG QLERNLLYQQ QLRQELFEQG LPFERSASLP VSVSGMNLDP VNGLGLSQGL 1080 1081 ELRDATTHMQ IGNSTLGFNH QNPRIPIGEP HFSQLESMEG RWSGADTQVV GDWAESQLHR 1140 1141 SNIDAEHHKM RSESRRMGED SNSWMLGGTT EDRSKQLFME LLHQRPGHQS AESPSMNRGQ 1200 1201 SFDRMAPSGL TPGIQTLGGY SDHGGSHNAP STFGARAFSD EQINRSSGDR NNMGSLHRNN 1260 1261 SLLSGIIDGG RSTQNETQAF SNMYAMNKDA NDIKTWNNVP PKNEGMGRMM SFEAQDRMGK 1320 1321 QAVLDSLVHG ELPVVTPGQQ SSLNISDQYS DNLVGEDRRK DRLVVPSHGQ NSVLLKRPPS 1380 1381 SHSSSSHEGL IERISDTASR TAASSYSGIE GGVRRESGAA GNKGSTSEAT SFSEMLKKSN 1440 1441 SMKKVAAESN DVTEGSKGGG GKKKGKKGRQ IDPALLGFKV TSNRIMGEIH RADDF 1495 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGCCGAAG GGAAGTTCGA TCTGCCTGAC GATCTCATCC TTTCCAAATC TTCTGATCAG 60 61 TTGAAAGAAT TGGCCTCAGA TAACAGCATT CCGTTGTCTC CGCAGTGGCT TTACACGAAA 120 121 TCAAGCGAGA GCAAGATGGA TGTTCGATCT CCTACTCCTA TGCCCATGGG AAATCCAAGT 180 181 GACCCAAATC TGAAGGATGC ATGGCGCTTG GATGCACCCG AAGACAAAAA AGACTGGAAG 240 241 AAAATTGTGT CTGAGAATGA AACTAATCGC AGATGGCGTG AAGAGGAAAG AGAAACTGGT 300 301 TTACTCGGTG CTAGGAAAGT TGATCGACGA AAAACAGAGC GTCGCATTGA CAATGTCTCA 360 361 AGCAGAGAAA CTGGTGAAGT TAAAACTACT GCTGCTTCTG ATAGGTGGAA TGATGTTAAT 420 421 TCTCGTGCTG CTGTACATGA ACCCCGTCGC GACAACAAAT GGTCATCTCG GTGGGGTCCT 480 481 GATGACAAAG AGAAAGAAGC CCGTTGTGAG AAGGTAGAGA TTAACAAGGA CAAGGAAGAG 540 541 CCTCAGAGTG AAAGTCAATC TGTTGTTAGC AATGTCCGTG CAACTTCTGA ACGGGACTCT 600 601 GACCCTCGTG ACAAATGGAG GCCACGTCAT AGGATGGAAT CGCAGTCTGG TGTGCCTACT 660 661 TCTTATCGTA CTGCACCTGG GTTTGGACTT GATAGAGGAC GAGCTGAGGG CCCAAATTTA 720 721 GGGTTCACTG TTGGCCGAGG AAGGGCATCT ACTATTGGGA GGGGTTCTTC AACTTCCTTA 780 781 ATTGGTGCTG GTAGTGCTTC AGCCCCTGTG TTTCGGTATC CAAGGGGTAA GTTGCTTGAT 840 841 ATGTATAGAA AACAGAAGCC TGATCCTTCC CTAGGTAGGA TACCGACTGA AATGGATGAA 900 901 GTTGCCTCCA TAACGCAAGT GGCTCTGATC GAACCTCTTG CTTTTATCGC ACCTGATACC 960 961 GAAGAAGAGG CAAGCATTAA CGGCATATGG AAGGGAAGGA TCATTAGTAG TGAAGTTTAC 1020 1021 ACTTCATCTG GGGAAGAGTC CTTAGGTGAA AACAGTCTGT TGAAATGCCG CATACCTGAG 1080 1081 TCAGGTGAGA CAAAAGTGGA TGGTGCTTTG CTAGGGTTTA TGAATGGTGA CAATGGCTCC 1140 1141 ATGAAAAATA ATGATTCCGG ATTACTTGGT AGTCATAATG GAGGTCTGGG GGCAGCTTCT 1200 1201 AGCGTCCCAA GATTGAATTC AGTGGCTTCT GAAAGTTATG GATCTTTTGG AGCTGGTTAT 1260 1261 CAAGTTTCTC ATGGAAGTCC TGAAGCAGTT AGATCAGTTT TTACTAAGTC CCCTGTGTTG 1320 1321 GATGGGAGCG AATCTGTTGT TGGGTCGTTC GAGCAAGATT ATATGGGCAA GCTGCAGCAA 1380 1381 CCAGATGTTG AAGTGGATCA GTCAGAAGCG GCTATGCCAC CTGAGGATTT CTTATTCTTG 1440 1441 TATATTGATC CTCAAGGAGT AATTCAGGGA CCATTCATTG GTTCTGACAT TATTTCATGG 1500 1501 TTTGAACAAG GGTTTTTTGG GACAGACCTA CAGGTGCGCT TGGCAAATGC TCCAGAAGGA 1560 1561 ACTCCTTTTC AAGATCTAGG CAGGGTCATG TCATATTTAA AGACAGAAAG CGCCCATGCC 1620 1621 CATATCAGTA ACCAAGAGAG TGAGCTAGAA GAGACTAGGT TAAAAGCAAA TTCAGACACT 1680 1681 GGTTTATCAA TTGCACCAGT AGCAGAATCT AATGATTCAT CCTCTATGAA TGGCACGTCT 1740 1741 CGTTCGTTTT CAGTGTATAA CAACCCCTCA GCTCAGGATA ATTTTCAAAG AAAGTCTGAG 1800 1801 TCAGAATTTT ATGCGACACC ACCACATACT GAGGACCGAA GTTTCTTGGA CTTCTCTACT 1860 1861 CAGGATGAAG GAAGAGCTGG AGTTTCTGGT TATGCGTCAG TAAAATCCTC TACAAGTATG 1920 1921 CATGATGCTT TTATGGAAGT TTCTGGCCAG TCTGCTATTC CTGTTGAATC CACTAAGGCT 1980 1981 GCTACTCAAA AGCAGCATGA GAATAAGCTG CATCCGTTTG GTGTGTTGTG GTCTGAGCTA 2040 2041 GAGAGCAGTA ACGTACCAGT TAACCTGTTA CCAAACAGGT CCTATGATGC AATGGGGGAG 2100 2101 CCTACTGGTG CAATAGACAA TCGGCCCATT GATTCCCGAA GAAATACACA AGTTGATCCC 2160 2161 AACATGTCCC TTGATGGTCT GGCTTCTAAC CGGATGTCGC AGTTTGAACA TCTTTCCAAC 2220 2221 CGCTTTAACC TTGGGGATCA ACTTTCATCA AATCAACATA ACCAACAGCA ATTCCAAAAC 2280 2281 CGGGATATGC TGTCGCATTC ACATATAGGT GATCAAGCTC AGGATCTGGA TTATTTAATA 2340 2341 ACTCTCCAGT TGCAGCAGCA ACAAAAGATT CAGTTGCAAC AGCAGCAGAA GATTCAATTG 2400 2401 CAGCAGCAGC AGAAGATTCA GTTGCAACAG CAGCAGAAGA TGCAGCTGCA ACAGCATCAA 2460 2461 CTAGAACAAG AGCATCAGTT ACATCAGAAG CTCTTACAGG AGCAACAACA GTCCCATGCT 2520 2521 CGGCAATTAC ATTATCAACA GATTCTACAA GGACAGACTC CTGATTCAAG GTTTGGGCAG 2580 2581 TCACATGACT TCCCTCGATC CAACAATGTT GATCAGATGT TGTTAGAACA CCAGCTAATG 2640 2641 AATGAACTGC AGAAAAGTTC TGGCCATCCG TCACAAAATT TTGCACCATA CATTGAGCAA 2700 2701 CTTGCCGCTG GAAATTTTGG TCAATTGCCA CATGAAGGCC ATCAGAGGGA ACTACTTGAA 2760 2761 CAGCTACTTT CAACAAAAAT GCAATCTCAA TATGGACCAA TGCAATCTCC ATACGGACAA 2820 2821 CTGCAATCTG AACCAACTCG GTCTTTGGAG TACCAACTGC TGCAGCAAGA GCAGCTGATG 2880 2881 CAATTGGCAA ACGGAGTGAG GCACAATACA CTATTGGAGG AACAGAGACA TATTGACCCT 2940 2941 CTGTGGCCAT CTGACCATAA TGATCAGCTT CTAAGAAGTC ATCCTGGGAT CCAACGTTCG 3000 3001 CGATCCTCTA CAGGATTTAG ACAACTAGAC TTTCATCAAC AGCAGCAGAG GCCACCCTTC 3060 3061 GAGGATCAGT TTGGTCAACT TGAGCGGAAC CTTTTATATC AGCAACAGCT TCGACAAGAA 3120 3121 TTATTCGAGC AGGGTCTGCC ATTTGAGCGA TCAGCATCCT TACCTGTAAG TGTATCGGGG 3180 3181 ATGAATCTGG ATCCAGTAAA TGGTCTTGGA CTCTCTCAAG GTCTGGAGTT GCGGGATGCT 3240 3241 ACTACCCACA TGCAGATTGG GAATTCTACT CTGGGTTTTA ATCATCAGAA TCCCCGTATA 3300 3301 CCAATAGGTG AACCTCATTT TTCACAGTTG GAATCAATGG AAGGACGTTG GTCTGGAGCT 3360 3361 GACACACAGG TTGTTGGTGA CTGGGCCGAA TCTCAACTTC ATAGATCAAA TATTGATGCT 3420 3421 GAACATCATA AAATGAGGTC AGAAAGTAGG AGAATGGGTG AAGATTCCAA CTCATGGATG 3480 3481 TTAGGTGGGA CTACAGAAGA CAGGTCAAAA CAGCTATTTA TGGAGTTGCT CCACCAGAGA 3540 3541 CCCGGCCATC AATCTGCTGA ATCACCAAGC ATGAACCGTG GGCAATCCTT TGACAGGATG 3600 3601 GCTCCTTCTG GCCTTACCCC AGGGATTCAA ACACTTGGCG GCTATTCAGA TCATGGTGGT 3660 3661 AGTCATAACG CTCCTTCAAC TTTTGGTGCT CGAGCATTTT CTGATGAACA GATCAACAGA 3720 3721 TCATCCGGAG ATAGGAACAA TATGGGATCA TTGCACCGTA ATAATTCCTT GCTTTCTGGA 3780 3781 ATTATTGATG GTGGGCGGTC AACTCAGAAT GAAACTCAAG CCTTCAGTAA TATGTATGCT 3840 3841 ATGAACAAAG ACGCGAATGA CATCAAAACT TGGAACAATG TGCCGCCTAA AAATGAGGGA 3900 3901 ATGGGAAGGA TGATGTCATT TGAAGCCCAA GATAGAATGG GCAAGCAAGC AGTATTAGAC 3960 3961 TCACTGGTTC ATGGGGAGCT TCCTGTTGTT ACGCCTGGCC AACAGTCTTC TTTAAATATC 4020 4021 TCTGGCTTAT CCTGA 4035 |
▼ ANNOTATION
| Disorder | ||||
| IUPred2A | ||||
| Interaction | ||||
| HINT | ||||
| Physicochemical | ||||
| Compute pI/Mw | AAindex | |||
| Localization | ||||
| COMPARTMENTS | ||||
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Brn-2175 | Brassica napus | 79.28 | 4e-44 | 177 |
| LLPS-Bro-1319 | Brassica oleracea | 65.91 | 0.0 | 753 |
| LLPS-Brr-1735 | Brassica rapa | 64.3 | 0.0 | 718 |
| LLPS-Sem-2371 | Selaginella moellendorffii | 64.06 | 3e-18 | 95.9 |
| LLPS-Nia-2271 | Nicotiana attenuata | 64.06 | 6e-18 | 95.1 |
| LLPS-Viv-2108 | Vitis vinifera | 62.5 | 4e-17 | 92.4 |
| LLPS-Sot-0455 | Solanum tuberosum | 60.94 | 2e-16 | 90.1 |
| LLPS-Sol-1664 | Solanum lycopersicum | 60.94 | 1e-16 | 90.5 |
| LLPS-Thc-2184 | Theobroma cacao | 60.94 | 8e-17 | 91.3 |
| LLPS-Arl-2507 | Arabidopsis lyrata | 59.38 | 1e-15 | 87.8 |
| LLPS-Gor-0298 | Gossypium raimondii | 59.38 | 1e-15 | 87.8 |
| LLPS-Pot-1358 | Populus trichocarpa | 59.38 | 9e-16 | 87.8 |
| LLPS-Amt-1038 | Amborella trichopoda | 59.09 | 3e-16 | 89.4 |
| LLPS-Orp-2074 | Oryza punctata | 57.81 | 6e-15 | 85.1 |
| LLPS-Prp-0438 | Prunus persica | 57.58 | 2e-16 | 89.7 |
| LLPS-Cus-0617 | Cucumis sativus | 57.14 | 3e-14 | 82.8 |
| LLPS-Zem-0758 | Zea mays | 57.14 | 3e-14 | 82.8 |
| LLPS-Orgl-2386 | Oryza glumaepatula | 56.25 | 9e-15 | 84.7 |
| LLPS-Brd-0793 | Brachypodium distachyon | 56.25 | 5e-14 | 82.0 |
| LLPS-Tra-2318 | Triticum aestivum | 56.25 | 2e-14 | 83.6 |
| LLPS-Ori-2015 | Oryza indica | 56.25 | 9e-15 | 84.7 |
| LLPS-Orb-1332 | Oryza barthii | 56.25 | 9e-15 | 84.7 |
| LLPS-Orni-0513 | Oryza nivara | 56.25 | 9e-15 | 84.7 |
| LLPS-Orr-0109 | Oryza rufipogon | 56.25 | 9e-15 | 84.7 |
| LLPS-Orbr-1789 | Oryza brachyantha | 56.25 | 7e-15 | 84.7 |
| LLPS-Sob-2416 | Sorghum bicolor | 56.25 | 6e-14 | 81.6 |
| LLPS-Dac-1331 | Daucus carota | 55.38 | 5e-15 | 85.5 |
| LLPS-Met-1887 | Medicago truncatula | 54.69 | 5e-14 | 82.0 |
| LLPS-Orm-1319 | Oryza meridionalis | 54.69 | 3e-14 | 82.8 |
| LLPS-Glm-0839 | Glycine max | 53.12 | 4e-13 | 79.0 |
| LLPS-Mua-0808 | Musa acuminata | 51.95 | 2e-16 | 90.5 |
| LLPS-Vir-2144 | Vigna radiata | 51.56 | 4e-13 | 79.3 |
| LLPS-Phv-2223 | Phaseolus vulgaris | 51.56 | 5e-13 | 79.0 |
| LLPS-Mae-1173 | Manihot esculenta | 51.19 | 1e-16 | 90.9 |
| LLPS-Php-1843 | Physcomitrella patens | 47.62 | 1e-17 | 94.0 |
| LLPS-Coc-1832 | Corchorus capsularis | 46.97 | 1e-79 | 295 |
| LLPS-Hea-2731 | Helianthus annuus | 45.97 | 3e-19 | 99.0 |
| LLPS-Tru-1044 | Triticum urartu | 44.44 | 2e-14 | 83.6 |
| LLPS-Aso-0657 | Aspergillus oryzae | 43.64 | 8e-06 | 55.1 |
| LLPS-Asf-0270 | Aspergillus flavus | 43.64 | 8e-06 | 55.1 |
| LLPS-Asni-0832 | Aspergillus niger | 43.64 | 5e-06 | 55.8 |
| LLPS-Asfu-1517 | Aspergillus fumigatus | 43.64 | 5e-06 | 55.8 |
| LLPS-Ast-0615 | Aspergillus terreus | 43.64 | 8e-06 | 55.1 |
| LLPS-Nef-1449 | Neosartorya fischeri | 43.64 | 5e-06 | 55.8 |
| LLPS-Via-0021 | Vigna angularis | 43.43 | 4e-13 | 79.3 |
| LLPS-Asn-1107 | Aspergillus nidulans | 35.87 | 1e-06 | 58.2 |