LLPS-Art-1626
RPL12A
▼ OVERVIEW
| Status: | Reviewed |
| Protein Name: | 50S ribosomal protein L12-1, chloroplastic; CL12-A |
| Gene Name: | RPL12A, At3g27830, K16N12.4 |
| Ensembl Gene: | AT3G27830 |
| Ensembl Protein: | AT3G27830.2 |
| Organism: | Arabidopsis thaliana |
| Taxa ID: | 3702 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Description | Tissue/Cell | PMIDs |
|---|---|---|---|
| Nucleolus | "...Comparative analysis revealed that 562 proteins were consistently identified in both experimental data sets." | 3 weeks-old Arabidopsis thaliana plants | 29104584 |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | AT3G27830.2 | AT3G27830.2 |
| Ensembl | AT3G27830.1 | AT3G27830.1 |
| UniProt | P36210, RK121_ARATH | |
| GeneBank | BT000419, BT006058, BT006568, AY136308, AY056124, X68046, CP002686, Z17719, AY054567, AP000371 | AEE77368.1, AAP21376.1, ANM64733.1, AAK96758.1, AAL07203.1, AAM96974.1, BAB02529.1, AAP04043.1, CAA48181.1, AAN15738.1, CAA79044.1 |
| RefSeq | NM_001338912.1, NM_113699.3 | NP_001326742.1, NP_189421.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MASTTLSIAT TIRSSSYPTL ASINHFPSRT TTIEFPSRFG GGSSSTLTHR ATHLRPIAAV 60 61 EAPEKIEKIG SEISSLTLEE ARILVDYLQD KFGVSPLSLA PAAAAVAAPA DGGAAAVVEE 120 121 QTEFDVVINE VPSSSRIAVI KAVRALTSLA LKEAKELIEG LPKKFKEGIT KDEAEEAKKT 180 181 LEEAGAKVSI A 191 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGCGTCGA CGACTCTCTC AATCGCAACA ACAATCCGTT CCTCATCTTA TCCTACTCTC 60 61 GCTTCCATCA ATCACTTCCC TTCCCGAACC ACCACCATCG AATTCCCCTC TCGCTTCGGT 120 121 GGTGGTTCAT CATCCACATT GACCCACCGT GCAACCCATC TCCGTCCAAT CGCCGCCGTC 180 181 GAAGCTCCGG AGAAAATCGA GAAGATCGGA TCCGAAATCT CATCCCTAAC CCTCGAAGAA 240 241 GCTCGTATCC TCGTCGACTA TCTCCAAGAC AAATTCGGTG TCTCCCCACT CTCTTTAGCC 300 301 CCCGCAGCAG CGGCGGTTGC TGCTCCAGCC GACGGTGGCG CGGCGGCTGT AGTGGAGGAG 360 361 CAAACAGAGT TCGATGTGGT TATCAATGAA GTTCCGAGTA GTTCTCGTAT TGCAGTAATT 420 421 AAAGCTGTTA GGGCTTTGAC TAGCTTGGCG TTGAAGGAAG CTAAGGAGCT AATCGAAGGA 480 481 TTACCAAAGA AGTTTAAAGA AGGTATCACT AAAGATGAAG CTGAAGAAGC TAAGAAGACT 540 541 CTTGAAGAAG CTGGTGCTAA AGTCTCCATT GCTTAA 576 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Arl-0497 | Arabidopsis lyrata | 98.24 | 8e-97 | 286 |
| LLPS-Brn-1970 | Brassica napus | 83.33 | 1e-76 | 234 |
| LLPS-Bro-2207 | Brassica oleracea | 83.33 | 1e-76 | 234 |
| LLPS-Brr-3035 | Brassica rapa | 82.81 | 3e-75 | 231 |
| LLPS-Orb-2032 | Oryza barthii | 75.0 | 2e-09 | 56.2 |
| LLPS-Coc-2093 | Corchorus capsularis | 73.37 | 5e-51 | 169 |
| LLPS-Pot-0682 | Populus trichocarpa | 72.22 | 3e-45 | 154 |
| LLPS-Prp-0923 | Prunus persica | 69.75 | 9e-56 | 181 |
| LLPS-Mae-1010 | Manihot esculenta | 67.46 | 3e-52 | 173 |
| LLPS-Viv-1433 | Vitis vinifera | 66.05 | 2e-50 | 167 |
| LLPS-Thc-1123 | Theobroma cacao | 65.73 | 8e-46 | 156 |
| LLPS-Cus-1438 | Cucumis sativus | 64.83 | 2e-45 | 154 |
| LLPS-Gor-2343 | Gossypium raimondii | 63.52 | 4e-47 | 160 |
| LLPS-Hea-1769 | Helianthus annuus | 63.49 | 2e-36 | 133 |
| LLPS-Mua-2531 | Musa acuminata | 61.36 | 3e-08 | 52.4 |
| LLPS-Dac-2207 | Daucus carota | 60.76 | 4e-46 | 156 |
| LLPS-Glm-1378 | Glycine max | 60.49 | 2e-42 | 149 |
| LLPS-Via-0241 | Vigna angularis | 60.23 | 1e-41 | 145 |
| LLPS-Vir-1578 | Vigna radiata | 59.35 | 5e-36 | 130 |
| LLPS-Ors-1678 | Oryza sativa | 52.41 | 8e-27 | 106 |
| LLPS-Ori-0813 | Oryza indica | 51.87 | 4e-26 | 104 |
| LLPS-Orbr-0870 | Oryza brachyantha | 45.61 | 6e-26 | 103 |
| LLPS-Sem-2392 | Selaginella moellendorffii | 45.1 | 8e-06 | 47.4 |
| LLPS-Osl-0968 | Ostreococcus lucimarinus | 42.24 | 4e-10 | 59.3 |
| LLPS-Lep-1430 | Leersia perrieri | 41.0 | 1e-09 | 57.8 |
| LLPS-Chr-1453 | Chlamydomonas reinhardtii | 37.84 | 2e-09 | 57.8 |
| LLPS-Tra-1083 | Triticum aestivum | 37.14 | 1e-08 | 55.5 |
| LLPS-Orgl-1283 | Oryza glumaepatula | 37.04 | 1e-07 | 52.8 |
| LLPS-Orni-1277 | Oryza nivara | 37.04 | 1e-07 | 52.8 |
| LLPS-Org-2166 | Oryza glaberrima | 37.04 | 1e-07 | 52.8 |
| LLPS-Orr-1138 | Oryza rufipogon | 37.04 | 2e-07 | 52.4 |
| LLPS-Brd-1422 | Brachypodium distachyon | 36.89 | 2e-08 | 54.7 |
| LLPS-Sob-0271 | Sorghum bicolor | 36.28 | 3e-08 | 54.3 |
| LLPS-Sei-1969 | Setaria italica | 35.96 | 4e-08 | 53.9 |
| LLPS-Scj-1508 | Schizosaccharomyces japonicus | 35.45 | 7e-07 | 50.8 |
| LLPS-Chc-0332 | Chondrus crispus | 34.78 | 2e-06 | 50.8 |
| LLPS-Gas-0753 | Galdieria sulphuraria | 34.51 | 2e-07 | 52.0 |
| LLPS-Zem-1819 | Zea mays | 34.17 | 3e-08 | 54.7 |
| LLPS-Php-2122 | Physcomitrella patens | 33.63 | 9e-07 | 50.8 |
| LLPS-Sol-2147 | Solanum lycopersicum | 33.04 | 3e-06 | 49.7 |