LLPS-Art-1542
HON5
▼ OVERVIEW
| Status: | Reviewed |
| Protein Name: | At1g48620 |
| Gene Name: | HON5, high mobility group A5, At1g48620, T1N15.25, T1N15_25 |
| Ensembl Gene: | AT1G48620 |
| Ensembl Protein: | AT1G48620.1 |
| Organism: | Arabidopsis thaliana |
| Taxa ID: | 3702 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Description | Tissue/Cell | PMIDs |
|---|---|---|---|
| Nucleolus | "...Here, we describe the first proteomic analysis of plant nucleoli, in which we have identified 217 proteins." | Protoplasts | 15496452 |
| Nucleolus | "...We identified 1602 proteins in the nucleolar and 2544 proteins in the nuclear fraction with an overlap of 1429 proteins." | Arabidopsis thaliana cells | 26980300 |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | AT1G48620.1 | AT1G48620.1 |
| UniProt | Q4V3D1, Q4V3D1_ARATH | |
| GeneBank | BT023425, BT025318, CP002684 | ABF57274.1, AEE32328.1, AAY56416.1 |
| RefSeq | NM_103758.3 | NP_175295.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MDPSLSATND PHHPPPPQFT SFPPFTNTNP FASPNHPFFT GPTAVAPPNN IHLYQAAPPQ 60 61 QPQTSPVPPH PSISHPPYSD MICTAIAALN EPDGSSKQAI SRYIERIYTG IPTAHGALLT 120 121 HHLKTLKTSG ILVMVKKSYK LASTPPPPPP TSVAPSLEPP RSDFIVNENQ PLPDPVLASS 180 181 TPQTIKRGRG RPPKAKPDVV QPQPLTNGKL TWEQSELPVS RPEEIQIQPP QLPLQPQQPV 240 241 KRPPGRPRKD GTSPTVKPAA SVSGGVETVK RRGRPPSGRA AGRERKPIVV SAPASVFPYV 300 301 ANGGVRRRGR PKRVDAGGAS SVAPPPPPPT NVESGGEEVA VKKRGRGRPP KIGGVIRKPM 360 361 KPMRSFARTG KPVGRPRKNA VSVGASGRQD GDYGELKKKF ELFQARAKDI VIVLKSEIGG 420 421 SGNQAVVQAI QDLEGIAETT NEPKHMEEVQ LPDEEHLETE PEAEGQGQTE AEAMQEALF 479 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGATCCTT CTCTCTCTGC AACCAATGAT CCTCATCATC CTCCTCCTCC TCAGTTCACA 60 61 TCTTTCCCTC CTTTCACCAA CACCAACCCC TTCGCCTCTC CAAACCACCC CTTCTTCACC 120 121 GGACCCACCG CCGTCGCGCC GCCAAACAAC ATCCATCTCT ATCAAGCAGC TCCTCCGCAG 180 181 CAGCCACAAA CATCTCCAGT TCCTCCTCAT CCATCTATTT CCCACCCTCC TTACTCTGAC 240 241 ATGATTTGCA CGGCGATTGC AGCGTTAAAC GAACCAGATG GGTCAAGCAA GCAAGCTATT 300 301 TCGAGGTACA TAGAGAGAAT TTACACTGGG ATTCCTACTG CTCATGGAGC TTTGTTGACA 360 361 CACCATCTCA AGACTTTGAA GACCAGTGGG ATTCTTGTCA TGGTTAAGAA ATCTTACAAG 420 421 CTTGCTTCTA CTCCTCCTCC TCCTCCTCCT ACTAGTGTAG CTCCTAGTCT TGAACCTCCC 480 481 AGATCTGATT TCATAGTCAA CGAGAACCAA CCTTTACCTG ATCCGGTTTT GGCTTCTTCT 540 541 ACTCCTCAGA CTATTAAACG TGGTCGTGGT CGACCTCCAA AAGCTAAACC AGATGTTGTT 600 601 CAACCTCAAC CTCTGACTAA TGGAAAACTC ACCTGGGAAC AGAGTGAATT ACCTGTCTCT 660 661 CGACCAGAGG AGATACAGAT ACAGCCGCCA CAGTTACCGT TACAGCCACA GCAGCCGGTT 720 721 AAGAGACCGC CGGGTCGTCC TAGAAAAGAT GGAACTTCGC CGACGGTGAA GCCAGCTGCT 780 781 TCTGTTTCCG GTGGTGTGGA GACTGTGAAA CGAAGAGGTA GACCTCCGAG TGGAAGAGCT 840 841 GCTGGGAGGG AGAGAAAGCC TATAGTAGTC TCAGCTCCAG CTTCAGTGTT CCCGTATGTT 900 901 GCTAATGGTG GTGTTAGACG CCGAGGGAGA CCAAAGAGAG TTGACGCTGG TGGTGCTTCC 960 961 TCTGTTGCTC CACCACCACC ACCACCAACT AACGTAGAGA GTGGAGGAGA GGAGGTTGCA 1020 1021 GTCAAGAAAC GAGGAAGAGG ACGGCCTCCT AAGATTGGAG GTGTTATCAG GAAGCCTATG 1080 1081 AAGCCGATGA GAAGCTTTGC TCGTACTGGA AAACCCGTAG GAAGACCCAG AAAGAATGCG 1140 1141 GTGTCAGTGG GAGCTTCTGG ACGACAAGAT GGTGACTATG GAGAACTGAA GAAGAAGTTT 1200 1201 GAGTTGTTTC AAGCGAGAGC TAAGGATATT GTAATTGTGT TGAAATCCGA GATAGGAGGA 1260 1261 AGTGGAAATC AAGCAGTGGT TCAAGCCATA CAGGACCTGG AAGGGATAGC AGAGACAACA 1320 1321 AACGAGCCAA AGCACATGGA AGAAGTGCAG CTGCCAGACG AGGAACACCT TGAAACCGAA 1380 1381 CCAGAAGCAG AGGGTCAAGG ACAGACAGAA GCAGAGGCAA TGCAAGAAGC TCTGTTCTAA 1440 |
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Arl-0515 | Arabidopsis lyrata | 85.11 | 6e-166 | 484 |
| LLPS-Bro-2994 | Brassica oleracea | 61.66 | 7e-99 | 311 |
| LLPS-Brr-0902 | Brassica rapa | 61.66 | 1e-82 | 274 |
| LLPS-Brn-0255 | Brassica napus | 61.38 | 1e-97 | 308 |
| LLPS-Hea-0917 | Helianthus annuus | 58.33 | 8e-07 | 55.1 |
| LLPS-Mae-1196 | Manihot esculenta | 50.42 | 2e-12 | 73.2 |
| LLPS-Vir-1457 | Vigna radiata | 47.2 | 1e-09 | 64.3 |
| LLPS-Gor-0961 | Gossypium raimondii | 46.67 | 2e-11 | 69.7 |
| LLPS-Via-1575 | Vigna angularis | 46.4 | 6e-09 | 62.4 |
| LLPS-Pot-2277 | Populus trichocarpa | 45.86 | 1e-09 | 64.3 |
| LLPS-Phv-1872 | Phaseolus vulgaris | 45.45 | 3e-08 | 60.1 |
| LLPS-Thc-1942 | Theobroma cacao | 43.75 | 6e-08 | 58.9 |
| LLPS-Glm-2743 | Glycine max | 33.24 | 1e-10 | 67.0 |