LLPS-Art-1350
At3g18640
▼ OVERVIEW
| Status: | Reviewed |
| Protein Name: | Zinc finger CCCH domain-containing protein 38 |
| Gene Name: | At3g18640, K24M9.13 |
| Ensembl Gene: | AT3G18640 |
| Ensembl Protein: | AT3G18640.2 |
| Organism: | Arabidopsis thaliana |
| Taxa ID: | 3702 |
| LLPS Type: | Others |
▼ Classification
Condensates:
| Condensate | Description | Tissue/Cell | PMIDs |
|---|---|---|---|
| Nucleolus | "...We identified 1602 proteins in the nucleolar and 2544 proteins in the nuclear fraction with an overlap of 1429 proteins." | Arabidopsis thaliana cells | 26980300 |
▼ CROSS REFERENCE
| Database | Nucleotide ID | Protein ID |
|---|---|---|
| Ensembl | AT3G18640.2 | AT3G18640.2 |
| Ensembl | AT3G18640.1 | AT3G18640.1 |
| Ensembl | AT3G18640.3 | AT3G18640.3 |
| UniProt | Q9LIH5, C3H38_ARATH, A0A1I9LRB7, Q56XB6 | |
| GeneBank | CP002686, AK221759, AP001303, AK175797 | AEE76125.1, BAD93829.1, BAB02222.1, ANM65125.1, BAD43560.1, ANM65126.1 |
| RefSeq | NM_001338349.1, NM_001338350.1, NM_112750.3 | NP_001327119.1, NP_001327120.1, NP_188494.1 |
▼ SEQUENCE
| Protein Sequence (FASTA) |
|---|
1 MEMSGLGRKR VSKWDSKEDT HHHHSSVNAN SASYYRDKES EPVRFNAESN GEARTRSRVS 60 61 QNNDNSYFSE QDGTRQQFVR RSGSRSNSRS RSRSRSPVYR ARRDAGSYDR HKTRTQVSPT 120 121 PIREFNKRGS DHLFDQSRSD HYGWEDNIRK PRETKYHTDD FREEAMMEGA RSSDYNNTDY 180 181 PEDNSRIRRR RSEFTGEKET QRRDGGDGEG GFHRSSNIPC KFFAAGTGFC RNGKYCRFSH 240 241 HVADRKQPQD NNNNFYRQDN NNHTSGHNKW NDVERLDNGR VGGIEVSRAS KKGVSESKGN 300 301 GSSSWIDDME MSPDWNYGVQ ALKKPVKEDH SVGIIGQSSQ SRVLKDDQRS SGMFSHGGRT 360 361 MAEKPVAASH QSYSNSVNVA PVETFNQNHN ALPYQSSLTA GGSQQVLAAA ATNFSVGSNL 420 421 SNLESGKVYQ DNHHSTVEKP VLVQNTVSRE QIDQITNISA SLAQFLANGQ PIPQLEQALQ 480 481 LPLHSESVQP NQATTQSNVV SSNPNQLWGL GMSTGAEGVP AVTASKISNV EEIQEVSLDP 540 541 KENGDKKTDE ASKEEEGKKT GEDTNDAENV VDEDEDGDDD GSDEENKKEK DPKGMRAFKF 600 601 ALVEVVKELL KPAWKEGKLN KDGYKNIVKK VAEKVTGTMQ SGNVPQTQEK IDHYLSASKP 660 661 KLTKLVQAYV GKIKKT 676 |
| Nucleotide CDS Sequence (FASTA) |
1 ATGGAAATGA GTGGTCTGGG AAGAAAACGT GTTTCAAAGT GGGACTCTAA GGAAGACACA 60 61 CACCATCATC ATTCTAGCGT AAATGCAAAC TCGGCTTCTT ATTACCGCGA CAAAGAGTCT 120 121 GAGCCTGTCC GGTTCAATGC AGAGAGTAAC GGTGAAGCTA GGACTAGAAG CAGAGTTTCA 180 181 CAGAATAACG ATAACAGTTA TTTTTCTGAA CAAGATGGTA CTAGGCAACA GTTTGTCCGT 240 241 AGGAGTGGAA GTAGAAGTAA TAGCAGGAGT AGAAGCCGTA GTAGAAGCCC AGTCTATAGA 300 301 GCTAGACGAG ACGCGGGATC TTATGACAGA CACAAGACGA GAACACAAGT TTCTCCTACG 360 361 CCAATCAGAG AATTCAATAA GAGAGGCAGT GATCATTTGT TTGATCAAAG CAGAAGTGAT 420 421 CATTATGGTT GGGAAGATAA CATTAGAAAG CCGAGGGAGA CCAAATATCA CACCGATGAT 480 481 TTCAGAGAAG AGGCAATGAT GGAAGGTGCA AGGTCTTCTG ACTATAATAA TACTGATTAT 540 541 CCCGAGGATA ATTCGAGAAT AAGAAGGCGA AGAAGCGAGT TTACGGGAGA GAAGGAAACA 600 601 CAAAGAAGGG ATGGTGGTGA TGGTGAAGGA GGATTCCACA GGAGTTCGAA TATTCCGTGT 660 661 AAGTTTTTCG CTGCGGGGAC GGGGTTCTGT CGTAATGGCA AGTATTGCAG GTTTTCTCAT 720 721 CATGTTGCTG ATAGAAAACA GCCTCAAGAC AACAACAACA ACTTTTATAG ACAGGACAAT 780 781 AACAATCATA CTAGTGGTCA TAATAAATGG AATGATGTTG AAAGATTGGA CAATGGAAGA 840 841 GTAGGCGGAA TCGAAGTTTC TCGTGCCAGT AAGAAGGGAG TTTCTGAATC TAAAGGGAAT 900 901 GGTAGTAGTA GCTGGATTGA TGACATGGAG ATGTCTCCTG ATTGGAATTA TGGAGTCCAA 960 961 GCTTTAAAGA AGCCTGTGAA GGAAGACCAT AGTGTTGGTA TTATTGGTCA GAGTTCACAA 1020 1021 TCTCGAGTTC TTAAAGATGA TCAGAGGAGT AGTGGTATGT TTTCACATGG TGGCAGAACT 1080 1081 ATGGCTGAGA AACCTGTAGC TGCTTCACAT CAGAGTTACA GTAATTCAGT GAATGTTGCG 1140 1141 CCAGTTGAAA CATTCAATCA GAATCATAAT GCATTACCGT ACCAAAGCTC ACTAACTGCT 1200 1201 GGAGGAAGTC AACAAGTGCT AGCTGCTGCT GCTACAAATT TCTCAGTAGG CTCCAACTTG 1260 1261 AGCAATCTTG AGAGTGGAAA AGTTTATCAA GATAATCATC ACTCAACTGT GGAGAAACCT 1320 1321 GTTTTGGTCC AAAATACAGT AAGTAGGGAA CAAATCGATC AGATTACTAA CATCTCAGCA 1380 1381 TCTCTAGCGC AGTTTCTTGC AAATGGTCAG CCCATTCCAC AGCTTGAACA GGCATTGCAG 1440 1441 CTGCCTCTGC ATTCAGAATC TGTTCAACCA AATCAGGCTA CTACTCAAAG TAATGTAGTG 1500 1501 AGTAGTAATC CAAATCAGCT ATGGGGATTA GGGATGAGCA CTGGCGCTGA AGGAGTCCCC 1560 1561 GCGGTTACTG CATCAAAGAT AAGCAATGTC GAAGAGATTC AAGAAGTATC GCTAGATCCC 1620 1621 AAGGAAAACG GGGACAAAAA GACTGATGAA GCTAGCAAGG AAGAAGAGGG TAAGAAAACT 1680 1681 GGAGAAGACA CTAATGATGC TGAGAATGTC GTGGATGAAG ATGAAGATGG TGATGATGAT 1740 1741 GGGAGCGACG AAGAGAACAA GAAAGAGAAA GACCCGAAAG GAATGCGGGC GTTTAAGTTT 1800 1801 GCTTTAGTTG AGGTTGTAAA AGAGCTTTTA AAACCAGCTT GGAAAGAAGG TAAGCTGAAC 1860 1861 AAAGATGGTT ACAAAAACAT AGTGAAGAAG GTAGCTGAGA AAGTGACTGG TACAATGCAA 1920 1921 AGTGGAAACG TTCCTCAAAC ACAGGAGAAG ATTGACCATT ATCTATCCGC TTCGAAACCA 1980 1981 AAGCTTACCA AGCTCGTTCA GGCATATGTC GGCAAAATCA AGAAGACCTA A 2031 |
▼ ANNOTATION
| Disorder | ||||
| IUPred2A | ||||
| Domain | ||||
| LCR-eXXXplorer | CDD | |||
| Physicochemical | ||||
| Compute pI/Mw | AAindex | |||
| Localization | ||||
| COMPARTMENTS | ||||
▼ ORTHOLOGY
| DrLLPS ID | Organism | Identity | E-value | Score |
|---|---|---|---|---|
| LLPS-Arl-0459 | Arabidopsis lyrata | 83.79 | 0.0 | 1019 |
| LLPS-Cus-1433 | Cucumis sativus | 76.19 | 2e-32 | 138 |
| LLPS-Pot-2287 | Populus trichocarpa | 75.9 | 2e-31 | 135 |
| LLPS-Mae-0259 | Manihot esculenta | 75.9 | 8e-32 | 136 |
| LLPS-Thc-0518 | Theobroma cacao | 74.7 | 4e-31 | 134 |
| LLPS-Met-2638 | Medicago truncatula | 74.7 | 1e-30 | 133 |
| LLPS-Phv-1653 | Phaseolus vulgaris | 74.68 | 2e-28 | 125 |
| LLPS-Gor-2800 | Gossypium raimondii | 70.24 | 5e-29 | 127 |
| LLPS-Coc-1956 | Corchorus capsularis | 70.24 | 2e-29 | 129 |
| LLPS-Viv-0278 | Vitis vinifera | 69.05 | 5e-27 | 121 |
| LLPS-Amt-1698 | Amborella trichopoda | 67.47 | 3e-26 | 119 |
| LLPS-Hea-2204 | Helianthus annuus | 66.25 | 7e-26 | 115 |
| LLPS-Mua-2158 | Musa acuminata | 65.06 | 8e-24 | 111 |
| LLPS-Via-2050 | Vigna angularis | 65.06 | 8e-24 | 111 |
| LLPS-Sol-0833 | Solanum lycopersicum | 63.86 | 1e-24 | 113 |
| LLPS-Brn-2625 | Brassica napus | 63.08 | 0.0 | 632 |
| LLPS-Brr-2187 | Brassica rapa | 59.33 | 0.0 | 595 |
| LLPS-Bro-0466 | Brassica oleracea | 58.45 | 0.0 | 621 |
| LLPS-Orb-0438 | Oryza barthii | 56.63 | 5e-20 | 99.4 |
| LLPS-Ori-0846 | Oryza indica | 56.63 | 5e-20 | 99.4 |
| LLPS-Orni-1894 | Oryza nivara | 56.63 | 5e-20 | 99.4 |
| LLPS-Orgl-0877 | Oryza glumaepatula | 56.63 | 6e-20 | 99.0 |
| LLPS-Brd-2221 | Brachypodium distachyon | 56.63 | 6e-20 | 99.0 |
| LLPS-Orp-2215 | Oryza punctata | 56.63 | 5e-20 | 99.4 |
| LLPS-Ors-0411 | Oryza sativa | 56.63 | 6e-20 | 99.0 |
| LLPS-Orr-0742 | Oryza rufipogon | 56.63 | 6e-20 | 99.0 |
| LLPS-Orm-1986 | Oryza meridionalis | 56.63 | 5e-20 | 99.4 |
| LLPS-Org-1919 | Oryza glaberrima | 56.63 | 5e-20 | 99.4 |
| LLPS-Sei-1792 | Setaria italica | 55.95 | 5e-19 | 95.9 |
| LLPS-Lep-2177 | Leersia perrieri | 55.42 | 1e-19 | 97.8 |
| LLPS-Dac-0261 | Daucus carota | 36.8 | 7e-30 | 129 |
| LLPS-Glm-0144 | Glycine max | 32.07 | 3e-35 | 147 |
| LLPS-Orbr-1781 | Oryza brachyantha | 30.87 | 2e-20 | 100 |