LLPS-Art-1253
GDH1

▼ OVERVIEW

Status: Reviewed
Protein Name: Glutamate dehydrogenase 1
Gene Name: GDH1, At5g18170, MRG7.13
Ensembl Gene: AT5G18170
Ensembl Protein: AT5G18170.1
Organism: Arabidopsis thaliana
Taxa ID: 3702
LLPS Type: Others


▼ PROPERTY


——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:
CondensateDescriptionTissue/CellPMIDs
Nucleolus
"...We identified 1602 proteins in the nucleolar and 2544 proteins in the nuclear fraction with an overlap of 1429 proteins."
Arabidopsis thaliana cells26980300

▼ CROSS REFERENCE

▼ SEQUENCE

Protein Sequence (FASTA)
1     MNALAATNRN  FKLAARLLGL  DSKLEKSLLI  PFREIKVECT  IPKDDGTLAS  FVGFRVQHDN  60
61    ARGPMKGGIR  YHPEVDPDEV  NALAQLMTWK  TAVAKIPYGG  AKGGIGCDPS  KLSISELERL  120
121   TRVFTQKIHD  LIGIHTDVPA  PDMGTGPQTM  AWILDEYSKF  HGYSPAVVTG  KPIDLGGSLG  180
181   RDAATGRGVM  FGTEALLNEH  GKTISGQRFV  IQGFGNVGSW  AAKLISEKGG  KIVAVSDITG  240
241   AIKNKDGIDI  PALLKHTKEH  RGVKGFDGAD  PIDPNSILVE  DCDILVPAAL  GGVINRENAN  300
301   EIKAKFIIEA  ANHPTDPDAD  EILSKKGVVI  LPDIYANSGG  VTVSYFEWVQ  NIQGFMWEEE  360
361   KVNDELKTYM  TRSFKDLKEM  CKTHSCDLRM  GAFTLGVNRV  AQATILRGWG  A  411
Nucleotide CDS Sequence (FASTA)
1     ATGAATGCTT  TAGCAGCAAC  AAACAGAAAC  TTCAAGTTAG  CTGCTAGGCT  TCTTGGTCTG  60
61    GATTCTAAGC  TCGAGAAAAG  TCTTCTCATC  CCCTTCCGAG  AAATCAAGGT  GGAATGTACC  120
121   ATACCGAAAG  ACGATGGTAC  ACTAGCATCA  TTCGTTGGGT  TCAGAGTTCA  ACACGACAAT  180
181   GCAAGAGGTC  CCATGAAAGG  TGGAATCAGA  TATCATCCTG  AGGTTGATCC  GGATGAAGTG  240
241   AACGCATTGG  CTCAGCTCAT  GACATGGAAA  ACAGCAGTGG  CTAAGATTCC  TTACGGAGGA  300
301   GCTAAAGGAG  GGATTGGTTG  TGATCCTAGC  AAGCTCAGTA  TCTCCGAGCT  CGAGCGGTTG  360
361   ACTCGAGTTT  TCACTCAGAA  GATTCATGAT  CTCATTGGGA  TTCATACTGA  TGTTCCAGCT  420
421   CCAGATATGG  GCACTGGTCC  TCAGACAATG  GCTTGGATTC  TTGATGAATA  CTCTAAGTTT  480
481   CATGGATACT  CGCCTGCAGT  TGTGACTGGA  AAACCCATTG  ATCTTGGTGG  ATCGCTAGGG  540
541   AGAGACGCGG  CTACTGGAAG  AGGAGTGATG  TTTGGTACCG  AAGCTTTGCT  TAACGAGCAC  600
601   GGAAAGACCA  TATCAGGGCA  GCGTTTTGTC  ATCCAGGGAT  TTGGTAATGT  GGGTTCTTGG  660
661   GCGGCAAAGC  TGATAAGTGA  AAAGGGTGGG  AAGATTGTTG  CCGTGAGTGA  CATTACCGGA  720
721   GCAATCAAGA  ACAAGGATGG  TATCGATATC  CCGGCCTTGC  TCAAGCATAC  TAAAGAACAC  780
781   AGAGGTGTCA  AAGGGTTTGA  TGGTGCAGAT  CCGATCGATC  CAAACTCCAT  ACTGGTTGAG  840
841   GATTGTGATA  TCCTCGTCCC  TGCAGCACTT  GGTGGTGTCA  TCAACAGGGA  GAATGCGAAT  900
901   GAGATTAAAG  CAAAGTTCAT  CATAGAAGCA  GCTAATCATC  CAACTGATCC  GGACGCGGAT  960
961   GAGATCCTAA  GTAAGAAAGG  TGTGGTTATT  CTCCCGGACA  TATATGCAAA  CTCTGGAGGA  1020
1021  GTCACTGTAA  GTTACTTCGA  ATGGGTTCAG  AACATTCAAG  GCTTTATGTG  GGAGGAAGAG  1080
1081  AAGGTGAACG  ATGAGCTAAA  GACTTACATG  ACTCGCTCTT  TCAAGGACTT  GAAAGAGATG  1140
1141  TGCAAAACTC  ACTCTTGCGA  TCTCCGGATG  GGAGCTTTCA  CACTCGGTGT  TAATCGTGTG  1200
1201  GCTCAAGCTA  CCATTCTCAG  AGGCTGGGGA  GCTTAA  1236

▼ ANNOTATION

Disorder
IUPred2A
Interaction
HINTMentha
Physicochemical
Compute pI/MwAAindex
Function
CGDBPIRSF
Localization
COMPARTMENTS

▼ ORTHOLOGY

DrLLPS IDOrganismIdentityE-valueScore
LLPS-Arl-1255Arabidopsis lyrata98.540.0 836
LLPS-Brr-2845Brassica rapa95.380.0 816
LLPS-Bro-1073Brassica oleracea95.380.0 814
LLPS-Brn-1823Brassica napus95.130.0 815
LLPS-Mae-2493Manihot esculenta91.480.0 788
LLPS-Coc-1180Corchorus capsularis91.480.0 786
LLPS-Pot-1886Populus trichocarpa91.240.0 787
LLPS-Viv-1883Vitis vinifera91.240.0 784
LLPS-Thc-1977Theobroma cacao91.240.0 786
LLPS-Sot-0860Solanum tuberosum90.750.0 780
LLPS-Prp-0958Prunus persica90.510.0 783
LLPS-Glm-1323Glycine max90.510.0 788
LLPS-Cus-0670Cucumis sativus90.510.0 788
LLPS-Nia-1143Nicotiana attenuata89.780.0 773
LLPS-Sol-0974Solanum lycopersicum89.780.0 776
LLPS-Met-1157Medicago truncatula89.780.0 777
LLPS-Dac-1000Daucus carota89.290.0 762
LLPS-Phv-1853Phaseolus vulgaris88.320.0 777
LLPS-Hea-1956Helianthus annuus86.860.0 759
LLPS-Vir-0730Vigna radiata86.840.0 756
LLPS-Ors-1092Oryza sativa85.640.0 752
LLPS-Amt-0982Amborella trichopoda85.160.0 748
LLPS-Via-2202Vigna angularis85.130.0 738
LLPS-Sob-1142Sorghum bicolor84.910.0 746
LLPS-Sei-1898Setaria italica84.910.0 745
LLPS-Zem-2343Zea mays84.670.0 742
LLPS-Tra-2864Triticum aestivum84.670.0 745
LLPS-Brd-1556Brachypodium distachyon84.180.0 741
LLPS-Gor-2160Gossypium raimondii81.750.0 717
LLPS-Org-2202Oryza glaberrima81.270.0 709
LLPS-Orr-1116Oryza rufipogon81.270.0 709
LLPS-Orni-1236Oryza nivara81.270.0 709
LLPS-Ori-1712Oryza indica81.270.0 709
LLPS-Orb-2357Oryza barthii81.270.0 709
LLPS-Orgl-1970Oryza glumaepatula81.270.0 709
LLPS-Orbr-0233Oryza brachyantha81.060.0 734
LLPS-Orp-0421Oryza punctata80.540.0 703
LLPS-Tru-0285Triticum urartu80.540.0 703
LLPS-Lep-1045Leersia perrieri80.540.0 704
LLPS-Mua-0781Musa acuminata80.050.0 704
LLPS-Orm-1846Oryza meridionalis79.810.0 697
LLPS-Sem-0120Selaginella moellendorffii75.910.0 672
LLPS-Php-2247Physcomitrella patens75.670.0 662
LLPS-Hov-0609Hordeum vulgare73.863e-145 421
LLPS-Chr-0451Chlamydomonas reinhardtii51.844e-147 433
LLPS-Cap-4487Cavia porcellus46.826e-74 247
LLPS-Myl-0742Myotis lucifugus46.679e-76 248
LLPS-Ora-3567Ornithorhynchus anatinus46.435e-43 156
LLPS-Orn-0985Oreochromis niloticus46.155e-85 276
LLPS-Asm-2343Astyanax mexicanus45.951e-84 275
LLPS-Nol-1460Nomascus leucogenys45.879e-85 275
LLPS-Caf-1496Canis familiaris45.872e-83 270
LLPS-Gog-0966Gorilla gorilla45.873e-85 277
LLPS-Sus-3060Sus scrofa45.871e-82 270
LLPS-Tut-0390Tursiops truncatus45.872e-82 269
LLPS-Mod-1928Monodelphis domestica45.786e-84 278
LLPS-Scm-3349Scophthalmus maximus45.652e-84 275
LLPS-Mal-3376Mandrillus leucophaeus45.584e-35 135
LLPS-Mum-4190Mus musculus45.572e-82 270
LLPS-Tar-1223Takifugu rubripes45.513e-80 263
LLPS-Poa-2734Pongo abelii45.354e-85 277
LLPS-Meg-2772Meleagris gallopavo45.332e-76 249
LLPS-Gaa-3973Gasterosteus aculeatus45.182e-81 266
LLPS-Hos-3138Homo sapiens45.052e-84 275
LLPS-Ran-1779Rattus norvegicus44.951e-82 270
LLPS-Ten-0318Tetraodon nigroviridis44.912e-81 266
LLPS-Ict-2520Ictidomys tridecemlineatus44.92e-33 131
LLPS-Dio-2965Dipodomys ordii44.92e-33 130
LLPS-Mea-3462Mesocricetus auratus44.741e-82 270
LLPS-Dar-3516Danio rerio44.447e-84 273
LLPS-Anc-1390Anolis carolinensis44.442e-83 272
LLPS-Gaga-3803Gallus gallus44.445e-84 273
LLPS-Orc-1124Oryctolagus cuniculus44.312e-81 264
LLPS-Man-4839Macaca nemestrina44.222e-32 128
LLPS-Mam-3476Macaca mulatta44.222e-32 128
LLPS-Icp-1231Ictalurus punctatus43.556e-82 268
LLPS-Scf-0225Scleropages formosus43.418e-79 259
LLPS-Drm-1651Drosophila melanogaster43.071e-85 278
LLPS-Paa-1518Papio anubis41.675e-67 228
LLPS-Cae-1688Caenorhabditis elegans41.561e-79 261
LLPS-Maf-3629Macaca fascicularis41.233e-64 221
LLPS-Cis-1882Ciona savignyi41.049e-70 236
LLPS-Anp-3113Anas platyrhynchos40.565e-79 258
LLPS-Pat-3543Pan troglodytes38.321e-71 241
LLPS-Rhb-3977Rhinopithecus bieti38.012e-54 193
LLPS-Cym-1115Cyanidioschyzon merolae37.53e-73 248
LLPS-Fuo-0619Fusarium oxysporum34.591e-43 163
LLPS-Fuv-1517Fusarium verticillioides34.591e-43 163
LLPS-Fus-1562Fusarium solani34.052e-42 160
LLPS-Phn-1429Phaeosphaeria nodorum33.657e-1062.0
LLPS-Dos-1442Dothistroma septosporum33.428e-43 161
LLPS-Nec-1279Neurospora crassa32.762e-41 157
LLPS-Trv-1351Trichoderma virens32.632e-40 154
LLPS-Cogr-0208Colletotrichum graminicola32.58e-42 158
LLPS-Zyt-0005Zymoseptoria tritici31.892e-40 154
LLPS-Cii-0193Ciona intestinalis31.575e-54 191
LLPS-Sac-0273Saccharomyces cerevisiae31.463e-43 162
LLPS-Trr-0943Trichoderma reesei31.272e-37 146
LLPS-Asf-1291Aspergillus flavus31.052e-36 143
LLPS-Aso-0341Aspergillus oryzae31.052e-36 143
LLPS-Coo-0382Colletotrichum orbiculare31.034e-40 154
LLPS-Pytr-1525Pyrenophora triticirepentis30.991e-40 155
LLPS-Pyt-0870Pyrenophora teres30.991e-40 155
LLPS-Ast-1493Aspergillus terreus30.93e-37 145
LLPS-Asni-1585Aspergillus niger30.94e-37 145
LLPS-Cog-1309Colletotrichum gloeosporioides30.883e-35 140
LLPS-Beb-1388Beauveria bassiana30.181e-39 153
LLPS-Lem-1507Leptosphaeria maculans29.934e-39 151
LLPS-Nef-1403Neosartorya fischeri29.93e-35 140
LLPS-Miv-0872Microbotryum violaceum29.52e-36 143
LLPS-Asn-0300Aspergillus nidulans29.272e-34 137
LLPS-Ved-1497Verticillium dahliae29.014e-27 115
LLPS-Asfu-1594Aspergillus fumigatus28.952e-34 137
LLPS-Asc-1606Aspergillus clavatus28.474e-33 134